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UBERON:0001281

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Name:hepatic sinusoid
Definition:"Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [Wikipedia:Hepatic_sinusoid, ZFIN:curator]
Xrefs:
links:

EHDAA2:0000999
EHDAA:2199
EHDAA:3997
EHDAA:4003
EHDAA:6992
EHDAA:8084
EMAPA:17365
FMA:17543
MA:0000367
ncithesaurus:Hepatic_Sinusoid
SCTID:67435004
TAO:0005091
VHOG:0000708

ZFA:0005091
Synonyms: "hepatic sinusoids" RELATED []
"liver sinusoid" EXACT []
"liver sinusoidal blood vessel" EXACT [OBOL:automatic]
"sinusoid of liver" EXACT [OBOL:automatic]
"sinusoidal blood vessel of liver" EXACT [OBOL:automatic]
"vas capillare sinusoideum" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:0003275
UBERON:FMA_17543-MA_0000367-ZFA_0005091
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0003909(sinusoid),UBERON:0005911(endo-epithelium),UBERON:0015796(liver blood vessel)
part_of:UBERON:0002107(liver),UBERON:0004647(liver lobule),UBERON:0006877(vasculature of liver)



Children

is a:FF:13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1),FF:13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2),FF:13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3),FF:13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1),FF:13599-146E8 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep2),FF:13600-146E9 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep3),FF:13601-146F1 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep1),FF:13602-146F2 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep2),FF:13603-146F3 (liver sinusoidal endothelial cells, partial hepatectomy, 30hr, biol_rep3),FF:13604-146F4 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep1),FF:13605-146F5 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep2),FF:13606-146F6 (liver sinusoidal endothelial cells, partial hepatectomy, 48hr, biol_rep3),FF:13607-146F7 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep1),FF:13608-146F8 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep2),FF:13609-146F9 (liver sinusoidal endothelial cells, partial hepatectomy, week01, biol_rep3)
derives from:FF:0000076 (hepatic sinusoidal endothelial cell sample)
part of:FF:0000076 (hepatic sinusoidal endothelial cell sample),CL:1000398 (endothelial cell of hepatic sinusoid)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results Mouse (Mus musculus)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001281 (hepatic sinusoid), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data