UBERON:0009142
From FANTOM5_SSTAR
Name: | entire mesenchyme | |
---|---|---|
Xrefs: |
| |
Comments: | consider adding new class (EMAPA:16097) for mesenchyme of embryo (some mesenchyme is extraembryonic - e.g. amnion mesoderm) | |
Alt_id: | UBERON:0003313 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000477(anatomical cluster),UBERON:0002050(embryonic structure),UBERON:0017650(developing mesenchymal structure) |
---|---|
part_of: | UBERON:0000922(embryo) |
Children
part of: | UBERON:0003104 (mesenchyme),UBERON:0005253 (head mesenchyme),UBERON:0005256 (trunk mesenchyme) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
- 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
- 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
- 11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
- 11628-122B8
- 11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
- 11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009142 (entire mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data