Personal tools

MCL coexpression mm9:131

From FANTOM5_SSTAR

Revision as of 14:45, 17 September 2013 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr10:127165632..127165636,+p@chr10:127165632..127165636
+
Mm9::chr10:128107809..128107810,-p@chr10:128107809..128107810
-
Mm9::chr10:128109355..128109365,-p@chr10:128109355..128109365
-
Mm9::chr10:31111154..31111155,+p@chr10:31111154..31111155
+
Mm9::chr11:106410939..106410940,+p@chr11:106410939..106410940
+
Mm9::chr11:112667912..112667916,+p@chr11:112667912..112667916
+
Mm9::chr11:14086132..14086136,+p@chr11:14086132..14086136
+
Mm9::chr11:27472982..27472983,+p@chr11:27472982..27472983
+
Mm9::chr11:43409580..43409591,+p@chr11:43409580..43409591
+
Mm9::chr11:43412071..43412093,+p@chr11:43412071..43412093
+
Mm9::chr11:43412139..43412149,-p@chr11:43412139..43412149
-
Mm9::chr11:43412170..43412191,+p@chr11:43412170..43412191
+
Mm9::chr11:43412172..43412177,-p@chr11:43412172..43412177
-
Mm9::chr11:43412215..43412219,-p@chr11:43412215..43412219
-
Mm9::chr11:43415053..43415069,-p1@Fabp6
Mm9::chr11:73476504..73476507,+p@chr11:73476504..73476507
+
Mm9::chr11:76715654..76715669,+p2@Tmigd1
Mm9::chr11:76717986..76718005,+p3@Tmigd1
Mm9::chr11:76718015..76718071,+p1@Tmigd1
Mm9::chr11:76730372..76730376,+p@chr11:76730372..76730376
+
Mm9::chr11:9039303..9039304,+p@chr11:9039303..9039304
+
Mm9::chr11:95698578..95698599,+p10@Gngt2
Mm9::chr12:103615373..103615374,+p@chr12:103615373..103615374
+
Mm9::chr13:17402712..17402716,+p@chr13:17402712..17402716
+
Mm9::chr13:19474480..19474486,+p@chr13:19474480..19474486
+
Mm9::chr13:36188729..36188734,+p@chr13:36188729..36188734
+
Mm9::chr13:54700191..54700202,-p@chr13:54700191..54700202
-
Mm9::chr13:55874724..55874725,-p@chr13:55874724..55874725
-
Mm9::chr15:70621810..70621814,-p@chr15:70621810..70621814
-
Mm9::chr15:76490088..76490111,-p5@Cyhr1
Mm9::chr15:95893643..95893649,+p@chr15:95893643..95893649
+
Mm9::chr16:32477713..32477720,-p@chr16:32477713..32477720
-
Mm9::chr17:36183506..36183515,-p@chr17:36183506..36183515
-
Mm9::chr17:4030939..4030944,-p@chr17:4030939..4030944
-
Mm9::chr17:43614030..43614038,+p@chr17:43614030..43614038
+
Mm9::chr18:11430214..11430220,+p@chr18:11430214..11430220
+
Mm9::chr18:21249664..21249690,+p@chr18:21249664..21249690
+
Mm9::chr18:21251793..21251827,+p@chr18:21251793..21251827
+
Mm9::chr18:25580528..25580530,-p@chr18:25580528..25580530
-
Mm9::chr18:55496010..55496011,-p@chr18:55496010..55496011
-
Mm9::chr18:57254736..57254740,+p@chr18:57254736..57254740
+
Mm9::chr18:58306021..58306022,+p@chr18:58306021..58306022
+
Mm9::chr19:6106122..6106133,+p@chr19:6106122..6106133
+
Mm9::chr19:6106404..6106428,+p@chr19:6106404..6106428
+
Mm9::chr19:6106879..6106904,+p@chr19:6106879..6106904
+
Mm9::chr19:6108448..6108458,+p@chr19:6108448..6108458
+
Mm9::chr19:6112886..6112902,+p@chr19:6112886..6112902
+
Mm9::chr19:6112906..6112914,+p@chr19:6112906..6112914
+
Mm9::chr19:6112924..6112937,+p@chr19:6112924..6112937
+
Mm9::chr19:6112940..6112946,+p@chr19:6112940..6112946
+
Mm9::chr19:6114448..6114456,+p@chr19:6114448..6114456
+
Mm9::chr19:6114458..6114471,+p@chr19:6114458..6114471
+
Mm9::chr19:6114850..6114862,+p@chr19:6114850..6114862
+
Mm9::chr19:6115570..6115587,+p@chr19:6115570..6115587
+
Mm9::chr19:6115717..6115726,+p@chr19:6115717..6115726
+
Mm9::chr1:174032230..174032242,+p@chr1:174032230..174032242
+
Mm9::chr1:174032263..174032278,+p@chr1:174032263..174032278
+
Mm9::chr1:40187318..40187321,-p@chr1:40187318..40187321
-
Mm9::chr1:84949289..84949294,+p@chr1:84949289..84949294
+
Mm9::chr2:112552986..112552989,+p@chr2:112552986..112552989
+
Mm9::chr2:127182898..127182901,+p@chr2:127182898..127182901
+
Mm9::chr3:103636485..103636490,+p3@Bcl2l15
Mm9::chr3:20879214..20879216,+p@chr3:20879214..20879216
+
Mm9::chr3:58426731..58426732,-p@chr3:58426731..58426732
-
Mm9::chr3:6169801..6169806,-p@chr3:6169801..6169806
-
Mm9::chr3:65610528..65610533,+p@chr3:65610528..65610533
+
Mm9::chr3:80191466..80191470,+p@chr3:80191466..80191470
+
Mm9::chr4:12792617..12792619,-p@chr4:12792617..12792619
-
Mm9::chr4:5463968..5463972,+p@chr4:5463968..5463972
+
Mm9::chr4:72564746..72564750,-p@chr4:72564746..72564750
-
Mm9::chr5:69875183..69875186,-p@chr5:69875183..69875186
-
Mm9::chr6:24042359..24042361,-p@chr6:24042359..24042361
-
Mm9::chr6:40578612..40578626,+p2@Mgam
Mm9::chr6:48856533..48856545,+p@chr6:48856533..48856545
+
Mm9::chr6:58593990..58594001,+p@chr6:58593990..58594001
+
Mm9::chr6:58594004..58594050,+p@chr6:58594004..58594050
+
Mm9::chr6:70379962..70379975,-p@chr6:70379962..70379975
-
Mm9::chr6:78323225..78323236,-p@chr6:78323225..78323236
-
Mm9::chr7:27569909..27569910,+p@chr7:27569909..27569910
+
Mm9::chr7:86972479..86972490,-p@chr7:86972479..86972490
-
Mm9::chr8:22639503..22639504,+p1@Defa20
p1@Gm15308
Mm9::chr8:27020687..27020691,+p@chr8:27020687..27020691
+
Mm9::chr8:5085607..5085611,-p@chr8:5085607..5085611
-
Mm9::chr8:5085929..5085963,-p@chr8:5085929..5085963
-
Mm9::chr8:5105240..5105254,-p1@Slc10a2
Mm9::chr9:50047835..50047836,+p@chr9:50047835..50047836
+
Mm9::chr9:65260578..65260603,+p@chr9:65260578..65260603
+
Mm9::chrX:68120720..68120723,-p@chrX:68120720..68120723
-
Mm9::chrX:83991903..83991905,-p@chrX:83991903..83991905
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030120vesicle coat0.00591161384004377
GO:0030662coated vesicle membrane0.00591161384004377
GO:0005798Golgi-associated vesicle0.00591161384004377
GO:0030659cytoplasmic vesicle membrane0.00798955422852865
GO:0044433cytoplasmic vesicle part0.00798955422852865
GO:0030117membrane coat0.00798955422852865
GO:0048475coated membrane0.00798955422852865
GO:0012506vesicle membrane0.00798955422852865
GO:0012505endomembrane system0.00798955422852865
GO:0015898amiloride transport0.00798955422852865
GO:0004339glucan 1,4-alpha-glucosidase activity0.00798955422852865
GO:0030157pancreatic juice secretion0.00798955422852865
GO:0030135coated vesicle0.0132705606165686
GO:0048038quinone binding0.0205344390387834
GO:0004558alpha-glucosidase activity0.0245938080668312
GO:0044431Golgi apparatus part0.0245938080668312
GO:0019028viral capsid0.0252053003267095
GO:0030132clathrin coat of coated pit0.0252053003267095
GO:0008131amine oxidase activity0.0252053003267095
GO:0030130clathrin coat of trans-Golgi network vesicle0.0287057226493634
GO:0016160amylase activity0.0287057226493634
GO:0008508bile acid:sodium symporter activity0.0287057226493634
GO:0012510trans-Golgi network transport vesicle membrane0.0287057226493634
GO:0015125bile acid transmembrane transporter activity0.0287057226493634
GO:0015926glucosidase activity0.0287057226493634
GO:0016023cytoplasmic membrane-bound vesicle0.0287057226493634
GO:0031988membrane-bound vesicle0.0287057226493634
GO:0051234establishment of localization0.0287057226493634
GO:0030126COPI vesicle coat0.0287057226493634
GO:0030663COPI coated vesicle membrane0.0287057226493634
GO:0008206bile acid metabolic process0.0292229006652402
GO:0030660Golgi-associated vesicle membrane0.0292229006652402
GO:0030658transport vesicle membrane0.0292229006652402
GO:0030137COPI-coated vesicle0.0292229006652402
GO:0007589fluid secretion0.0292229006652402
GO:0015711organic anion transport0.0292229006652402
GO:0030140trans-Golgi network transport vesicle0.0310102752149507
GO:0030125clathrin vesicle coat0.0310672223499522
GO:0022600digestive system process0.0310672223499522
GO:0015893drug transport0.0310672223499522
GO:0044423virion part0.0326329409199633
GO:0051179localization0.033329424528873
GO:0030665clathrin coated vesicle membrane0.033329424528873
GO:0016641oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor0.0339629543485862
GO:0008028monocarboxylic acid transmembrane transporter activity0.0339629543485862
GO:0030133transport vesicle0.0373592924299797
GO:0005343organic acid:sodium symporter activity0.0379388381184703
GO:0031410cytoplasmic vesicle0.0379388381184703
GO:0031982vesicle0.0381706852158428
GO:0016638oxidoreductase activity, acting on the CH-NH2 group of donors0.0381706852158428



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.17.25174e-14
MA0004.10.239291
MA0006.18.69185e-05
MA0007.10.211814
MA0009.11.09458
MA0014.11.16449e-10
MA0017.11.00266
MA0019.10.140557
MA0024.10.270599
MA0025.11.18671
MA0027.11.47791
MA0028.10.0159875
MA0029.11.35771
MA0030.10.0729657
MA0031.10.0604105
MA0038.11.62509
MA0040.11.13234
MA0041.11.22521
MA0042.10.307516
MA0043.10.143056
MA0046.10.362798
MA0048.10.0328851
MA0050.10.0789484
MA0051.10.188414
MA0052.10.700808
MA0055.10.189685
MA0056.10
MA0057.12.97172e-05
MA0058.10.289043
MA0059.10.322897
MA0060.10.000448021
MA0061.10.0288248
MA0063.10
MA0066.10.0623583
MA0067.10.297852
MA0068.10.000147277
MA0069.10.344565
MA0070.10.101581
MA0071.10.173543
MA0072.10.323016
MA0073.13.01211e-09
MA0074.11.00655
MA0076.10.0290233
MA0077.10.298095
MA0078.10.229484
MA0081.10.574039
MA0083.10.439342
MA0084.10.55807
MA0087.10.383772
MA0088.18.13598e-05
MA0089.10
MA0090.10.476088
MA0091.10.141425
MA0092.10.477155
MA0093.10.161862
MA0095.10
MA0098.10
MA0100.10.117752
MA0101.10.216666
MA0103.11.08244
MA0105.10.00010727
MA0106.11.9279
MA0107.10.296403
MA0108.20.0409692
MA0109.10
MA0111.10.104143
MA0113.10.394102
MA0114.10.650301
MA0115.10.872138
MA0116.10.0695223
MA0117.10.127979
MA0119.10.217871
MA0122.10.427729
MA0124.10.722458
MA0125.10.609642
MA0130.10
MA0131.10.0340923
MA0132.10
MA0133.10
MA0135.12.16609
MA0136.10.511381
MA0139.10.00224813
MA0140.10.117647
MA0141.10.972961
MA0142.10.783322
MA0143.10.698624
MA0144.10.105468
MA0145.10.00247944
MA0146.15.51594e-05
MA0147.10.0163075
MA0148.10.660327
MA0149.10.000851288
MA0062.20.0105274
MA0035.20.253727
MA0039.27.31153e-12
MA0138.22.23736
MA0002.20.232984
MA0137.20.0330099
MA0104.20.00387145
MA0047.20.584203
MA0112.20.105902
MA0065.20.15007
MA0150.11.34557
MA0151.10
MA0152.10.584509
MA0153.10.987067
MA0154.10.0304873
MA0155.10.0105052
MA0156.10.491882
MA0157.10.0460032
MA0158.10
MA0159.10.478558
MA0160.10.277058
MA0161.10
MA0162.15.76205e-12
MA0163.14.4052e-05
MA0164.10.780122
MA0080.20.189337
MA0018.20.0123156
MA0099.20.872091
MA0079.20
MA0102.20.603519
MA0258.10.133609
MA0259.10.0606341
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:131&oldid=3072130"