UBERON:0004288

Name:	skeleton
Definition:	"all the bones and/or cartilaginous elements in the body. Together with the articular system, this comprises the skeletal system." [FMA:23875, UBERON:cjm, Wikipedia:Skeleton]
Xrefs:	Expandlinks: AEO:0000168 EFO:0000806 EHDAA2:0001843 EHDAA:5047 EHDAA:8005 EHDAA:8041 FMA:23875 GAID:177 galen:Skeleton MA:0003006 MAT:0000032 MESH:A.02.835 MIAA:0000032 OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA SCTID:361378004 VSAO:0000026 XAO:0004053
Synonyms:	"set of all bones" EXACT [] "set of bones of body" EXACT []
Comments:	Note that the source FMA definition has been modified here to include cartilage skeletons. We may wish to introduce subclasses for bony/cartilage skeletons.
Subset:	uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0000477(anatomical cluster)
disjoint_from:	UBERON:0004770(articular system)
part_of:	UBERON:0001434(skeletal system)

Children

part of:	UBERON:0005863 (cartilaginous condensation),UBERON:0005866 (pre-cartilage condensation),UBERON:0010912 (subdivision of skeleton)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Human (Homo sapiens)

• 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
• 1350-25C3 (bone (os femoris), neonate N20)
• 1525-43A6 (bone (os femoris), neonate N16)
• 1985-43F5 (bone (os femoris), neonate N02)
• 56-12G2 (bone (os femoris), adult)

Mouse (Mus musculus)

• 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
• 1350-25C3 (bone (os femoris), neonate N20)
• 1525-43A6 (bone (os femoris), neonate N16)
• 1985-43F5 (bone (os femoris), neonate N02)
• 56-12G2 (bone (os femoris), adult)

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004288 (skeleton), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
5.42e-195	FFCP PHASE2:Hg19::chr17:54893192..54893195,-	p14@C17orf67
5.42e-195	FFCP PHASE1:Hg19::chr17:54893192..54893195,-	p14@C17orf67
9.37e-99	FFCP PHASE2:Hg19::chr17:54893292..54893300,-	p13@C17orf67
9.37e-99	FFCP PHASE1:Hg19::chr17:54893269..54893278,-	p11@C17orf67
9.37e-99	FFCP PHASE1:Hg19::chr17:54893292..54893300,-	p13@C17orf67
9.37e-99	FFCP PHASE2:Hg19::chr17:54893213..54893220,-	p12@C17orf67
9.37e-99	FFCP PHASE2:Hg19::chr8:57353655..57353662,-	p@chr8:57353655..57353662, -
9.37e-99	FFCP PHASE1:Hg19::chr8:57353655..57353662,-	p@chr8:57353655..57353662, -
9.37e-99	FFCP PHASE2:Hg19::chr17:54893269..54893278,-	p11@C17orf67
9.37e-99	FFCP PHASE1:Hg19::chr17:54893213..54893220,-	p12@C17orf67
2.39e-66	FFCP PHASE1:Hg19::chr5:75912402..75912418,-	p@chr5:75912402..75912418, -
2.39e-66	FFCP PHASE2:Hg19::chr4:151503647..151503656,+	p14@MAB21L2
2.39e-66	FFCP PHASE1:Hg19::chr4:151503647..151503656,+	p14@MAB21L2
2.39e-66	FFCP PHASE2:Hg19::chr5:75912402..75912418,-	p@chr5:75912402..75912418, -
4.66e-66	FFCP PHASE2:Hg19::chr4:151505582..151505614,+	p@chr4:151505582..151505614, +
4.66e-66	FFCP PHASE1:Hg19::chr4:151505582..151505614,+	p@chr4:151505582..151505614, +
1.46e-50	FFCP PHASE2:Hg19::chr8:57354278..57354286,+	p@chr8:57354278..57354286, +
1.46e-50	FFCP PHASE2:Hg19::chr17:54893196..54893207,-	p9@C17orf67
1.46e-50	FFCP PHASE2:Hg19::chr3:157823323..157823328,+	p17@RSRC1
1.46e-50	FFCP PHASE1:Hg19::chr3:157823323..157823328,+	p17@RSRC1
1.46e-50	FFCP PHASE1:Hg19::chr8:57354278..57354286,+	p@chr8:57354278..57354286, +
1.46e-50	FFCP PHASE1:Hg19::chr17:54893196..54893207,-	p9@C17orf67
2.42e-50	FFCP PHASE1:Hg19::chr8:57802672..57802682,-	p@chr8:57802672..57802682, -
2.42e-50	FFCP PHASE2:Hg19::chr8:57802672..57802682,-	p@chr8:57802672..57802682, -
3.99e-50	FFCP PHASE2:Hg19::chr17:76930661..76930674,+	p1@AK123925
3.99e-50	FFCP PHASE2:Hg19::chr5:75913767..75913778,-	p@chr5:75913767..75913778, -
3.99e-50	FFCP PHASE1:Hg19::chr5:75913767..75913778,-	p@chr5:75913767..75913778, -
3.99e-50	FFCP PHASE1:Hg19::chr17:76930661..76930674,+	p1@AK123925
3.99e-50	FFCP PHASE2:Hg19::chr12:85673913..85673919,+	p7@ALX1
3.99e-50	FFCP PHASE1:Hg19::chr12:85673913..85673919,+	p7@ALX1
6.58e-50	FFCP PHASE2:Hg19::chr2:33519090..33519092,+	p@chr2:33519090..33519092, +
6.58e-50	FFCP PHASE1:Hg19::chr2:33519090..33519092,+	p@chr2:33519090..33519092, +
6.58e-50	FFCP PHASE2:Hg19::chr13:28961248..28961262,-	p23@FLT1
6.58e-50	FFCP PHASE1:Hg19::chr13:28961248..28961262,-	p23@FLT1
3.4e-49	FFCP PHASE2:Mm9::chr11:77624716..77624729,+	p26@Myo18a
3.4e-49	FFCP PHASE1:Mm9::chr11:77624716..77624729,+	p26@Myo18a
4.96e-49	FFCP PHASE2:Mm9::chr8:75097542..75097549,+	p@chr8:75097542..75097549, +
4.96e-49	FFCP PHASE1:Mm9::chr8:75097542..75097549,+	p@chr8:75097542..75097549, +
4.96e-49	FFCP PHASE2:Mm9::chr2:32482372..32482381,+	p@chr2:32482372..32482381, +
4.96e-49	FFCP PHASE2:Mm9::chr9:21934585..21934591,-	p@chr9:21934585..21934591, -
4.96e-49	FFCP PHASE1:Mm9::chr2:32482372..32482381,+	p@chr2:32482372..32482381, +
4.96e-49	FFCP PHASE1:Mm9::chr9:21934585..21934591,-	p@chr9:21934585..21934591, -
3.15e-44	FFCP PHASE2:Mm9::chr6:51525810..51525817,+	p@chr6:51525810..51525817, +
3.15e-44	FFCP PHASE1:Mm9::chr6:51525810..51525817,+	p@chr6:51525810..51525817, +
6.62e-41	FFCP PHASE2:Hg19::chr8:57353666..57353675,-	p@chr8:57353666..57353675, -
6.62e-41	FFCP PHASE1:Hg19::chr8:57353666..57353675,-	p@chr8:57353666..57353675, -
6.62e-41	FFCP PHASE2:Hg19::chr8:57354143..57354152,+	p@chr8:57354143..57354152, +
6.62e-41	FFCP PHASE2:Hg19::chr8:57353779..57353790,-	p@chr8:57353779..57353790, -
6.62e-41	FFCP PHASE1:Hg19::chr8:57353779..57353790,-	p@chr8:57353779..57353790, -
6.62e-41	FFCP PHASE1:Hg19::chr8:57354143..57354152,+	p@chr8:57354143..57354152, +
1.48e-40	FFCP PHASE2:Hg19::chr1:75600308..75600316,+	p8@LHX8
1.48e-40	FFCP PHASE1:Hg19::chr1:75600308..75600316,+	p8@LHX8
1.48e-40	FFCP PHASE2:Hg19::chr20:49253452..49253461,-	p12@FAM65C
1.48e-40	FFCP PHASE1:Hg19::chr20:49253452..49253461,-	p12@FAM65C
1.48e-40	FFCP PHASE2:Hg19::chr1:6615391..6615401,+	p2@TAS1R1
1.48e-40	FFCP PHASE1:Hg19::chr1:6615391..6615401,+	p2@TAS1R1
2.21e-40	FFCP PHASE2:Hg19::chr5:75912831..75912842,-	p@chr5:75912831..75912842, -
2.21e-40	FFCP PHASE1:Hg19::chr5:75912831..75912842,-	p@chr5:75912831..75912842, -
2.21e-40	FFCP PHASE2:Hg19::chr16:67687543..67687559,-	p@chr16:67687543..67687559, -
2.21e-40	FFCP PHASE1:Hg19::chr16:67687543..67687559,-	p@chr16:67687543..67687559, -
3.3e-40	FFCP PHASE1:Hg19::chr9:125165007..125165016,+	p@chr9:125165007..125165016, +
3.3e-40	FFCP PHASE2:Hg19::chr6:46190219..46190230,-	p@chr6:46190219..46190230, -
3.3e-40	FFCP PHASE1:Hg19::chr6:46190219..46190230,-	p@chr6:46190219..46190230, -
3.3e-40	FFCP PHASE2:Hg19::chr9:125165007..125165016,+	p@chr9:125165007..125165016, +
9.78e-40	FFCP PHASE2:Mm9::chr19:4876870..4876880,-	p@chr19:4876870..4876880, -
9.78e-40	FFCP PHASE1:Mm9::chr19:4876870..4876880,-	p@chr19:4876870..4876880, -
1.15e-39	FFCP PHASE2:Mm9::chr1:174140324..174140335,-	p@chr1:174140324..174140335, -
1.15e-39	FFCP PHASE1:Mm9::chr1:174140324..174140335,-	p@chr1:174140324..174140335, -
1.15e-39	FFCP PHASE1:Mm9::chr16:24096441..24096449,+	p@chr16:24096441..24096449, +
1.15e-39	FFCP PHASE1:Mm9::chr6:4490674..4490679,+	p@chr6:4490674..4490679, +
1.15e-39	FFCP PHASE1:Mm9::chr11:67063327..67063335,+	p@chr11:67063327..67063335, +
1.15e-39	FFCP PHASE2:Mm9::chr11:67063327..67063335,+	p@chr11:67063327..67063335, +
1.15e-39	FFCP PHASE2:Mm9::chr6:4490674..4490679,+	p@chr6:4490674..4490679, +
1.15e-39	FFCP PHASE2:Mm9::chr16:24096441..24096449,+	p@chr16:24096441..24096449, +
1.55e-39	FFCP PHASE1:Mm9::chr1:174143249..174143260,-	p@chr1:174143249..174143260, -
1.55e-39	FFCP PHASE2:Mm9::chr1:174143249..174143260,-	p@chr1:174143249..174143260, -
3.03e-39	FFCP PHASE1:Mm9::chr6:51525869..51525891,+	p@chr6:51525869..51525891, +
3.03e-39	FFCP PHASE2:Mm9::chr6:51525869..51525891,+	p@chr6:51525869..51525891, +
9.31e-39	FFCP PHASE1:Mm9::chr11:102130083..102130092,+	p3@Asb16
9.31e-39	FFCP PHASE2:Mm9::chr11:102130083..102130092,+	p3@Asb16
2.41e-35	FFCP PHASE2:Mm9::chr7:133604286..133604297,-	p@chr7:133604286..133604297, -
2.41e-35	FFCP PHASE1:Mm9::chr7:133604286..133604297,-	p@chr7:133604286..133604297, -
2.95e-35	FFCP PHASE1:Mm9::chr4:138365748..138365759,-	p5@Pla2g5
2.95e-35	FFCP PHASE2:Mm9::chr4:138365748..138365759,-	p5@Pla2g5
1.84e-34	FFCP PHASE1:Hg19::chr4:8594472..8594473,+	p4@CPZ
1.84e-34	FFCP PHASE1:Hg19::chr10:15760985..15760992,-	p@chr10:15760985..15760992, -
1.84e-34	FFCP PHASE2:Hg19::chr10:15760985..15760992,-	p@chr10:15760985..15760992, -
1.84e-34	FFCP PHASE2:Hg19::chr8:57359557..57359570,-	p5@PENK
1.84e-34	FFCP PHASE1:Hg19::chr8:57359557..57359570,-	p5@PENK
1.84e-34	FFCP PHASE2:Hg19::chr4:8594472..8594473,+	p4@CPZ
2.58e-34	FFCP PHASE2:Hg19::chr14:61125018..61125037,-	p9@SIX1
2.58e-34	FFCP PHASE1:Hg19::chr14:61125018..61125037,-	p9@SIX1
5.05e-34	FFCP PHASE2:Hg19::chr6:134327986..134327991,-	p@chr6:134327986..134327991, -
5.05e-34	FFCP PHASE1:Hg19::chr6:134327986..134327991,-	p@chr6:134327986..134327991, -
7.06e-34	FFCP PHASE2:Hg19::chr8:57353676..57353688,-	p@chr8:57353676..57353688, -
7.06e-34	FFCP PHASE1:Hg19::chr8:57353676..57353688,-	p@chr8:57353676..57353688, -
7.06e-34	FFCP PHASE2:Hg19::chr13:58291223..58291226,+	p@chr13:58291223..58291226, +
7.06e-34	FFCP PHASE1:Hg19::chr13:58291223..58291226,+	p@chr13:58291223..58291226, +
9.53e-34	FFCP PHASE1:Mm9::chr8:74049600..74049612,-	p2@uc009mdq.1
9.53e-34	FFCP PHASE2:Mm9::chr8:74049600..74049612,-	p2@uc009mdq.1

Showing 1 to 100 of 100 entries

Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that consists of all the skeletal elements (eg., bone, cartilage, and teeth) of the body.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.