Personal tools

UBERON:0010011

From FANTOM5_SSTAR

Revision as of 18:07, 12 September 2014 by Autoedit (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:collection of basal ganglia
Namespace:FANTOM
Xrefs:
links:

BM:Tel-BG
FMA:84013
GAID:617
MA:0000184
MESH:A.08.186.211.730.885.105
ncithesaurus:Basal_Ganglia

NIF_GrossAnatomy:birnlex_826
Synonyms: "basal ganglia" EXACT [FMA:84013]
"basal ganglia set" EXACT [FMA:84013]
"set of basal ganglia" EXACT [FMA:84013]
Comments:Editor note: it is necessary to introduce two classes, one representing an individual basal ganglion, another representing the aggregate structure, in order to have consistent classification amongst AOs (e.g. in MA the aygdala is part of the BG, in FMA and BTO it is a subclass). Apart from achieving this consistency, the value of having two distinct classes is questionable, since the BG-plural is trivially the collection of all BGs-singular. it would be better for all AOs to decide on one single way of doing this. Do not merge until this is done.

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0010009(aggregate regional part of brain),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0000454(cerebral subcortex),UBERON:0001893(telencephalon)



Children

part of:UBERON:0002420 (basal ganglion)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010011 (collection of basal ganglia), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.82e-133FFCP PHASE2:Hg19::chr18:11751466..11751475,+#_0eb6a9910ddcee9dbd7ae2c9520b3422p22@GNAL
1.82e-133FFCP PHASE1:Hg19::chr18:11751466..11751475,+#_0eb6a9910ddcee9dbd7ae2c9520b3422p22@GNAL
1.42e-130FFCP PHASE2:Hg19::chr15:40582949..40582989,+#_81c6ecfdd1d16d1e29a32444116cfc42p@chr15:40582949..40582989, +
1.42e-130FFCP PHASE1:Hg19::chr15:40582949..40582989,+#_81c6ecfdd1d16d1e29a32444116cfc42p@chr15:40582949..40582989, +
1.21e-118FFCP PHASE1:Hg19::chr3:35722978..35722999,+#_57792cd868825dc3cee6fd1918a29044p28@ARPP21
1.21e-118FFCP PHASE2:Hg19::chr3:35722978..35722999,+#_57792cd868825dc3cee6fd1918a29044p28@ARPP21
3.02e-112FFCP PHASE2:Hg19::chr13:98995904..98995913,+#_2a8c671cb47152f341c9e0291917d317p@chr13:98995904..98995913, +
3.02e-112FFCP PHASE1:Hg19::chr13:98995904..98995913,+#_2a8c671cb47152f341c9e0291917d317p@chr13:98995904..98995913, +
3.66e-112FFCP PHASE2:Hg19::chr11:80886203..80886231,+#_572e871eaf0a2d334764e8dc963b1e52p@chr11:80886203..80886231, +
3.66e-112FFCP PHASE1:Hg19::chr11:80886203..80886231,+#_572e871eaf0a2d334764e8dc963b1e52p@chr11:80886203..80886231, +
6.51e-112FFCP PHASE1:Hg19::chr2:7112752..7112770,+#_c95d6a86506e6df9f91c08b5e0522b79p@chr2:7112752..7112770, +
6.51e-112FFCP PHASE2:Hg19::chr2:7112752..7112770,+#_c95d6a86506e6df9f91c08b5e0522b79p@chr2:7112752..7112770, +
7.88e-112FFCP PHASE1:Hg19::chr22:27727810..27727817,+#_e396e0d186126fc137c0bfa6a3ad5b0cp3@ENST00000413244
7.88e-112FFCP PHASE2:Hg19::chr22:27727810..27727817,+#_e396e0d186126fc137c0bfa6a3ad5b0cp3@ENST00000413244
4.6e-109FFCP PHASE1:Hg19::chr15:35546024..35546035,-#_fa5dac382628a88712bb90b159b8a578p@chr15:35546024..35546035, -
4.6e-109FFCP PHASE1:Hg19::chr2:3853961..3853984,+#_fa5dac382628a88712bb90b159b8a578p@chr2:3853961..3853984, +
4.6e-109FFCP PHASE2:Hg19::chr15:35546024..35546035,-#_fa5dac382628a88712bb90b159b8a578p@chr15:35546024..35546035, -
4.6e-109FFCP PHASE2:Hg19::chr2:3853961..3853984,+#_fa5dac382628a88712bb90b159b8a578p@chr2:3853961..3853984, +
4.6e-109FFCP PHASE1:Hg19::chr17:19390211..19390223,+#_fa5dac382628a88712bb90b159b8a578p@chr17:19390211..19390223, +
4.6e-109FFCP PHASE2:Hg19::chr19:719510..719520,+#_fa5dac382628a88712bb90b159b8a578p@chr19:719510..719520, +
4.6e-109FFCP PHASE1:Hg19::chr19:719510..719520,+#_fa5dac382628a88712bb90b159b8a578p@chr19:719510..719520, +
4.6e-109FFCP PHASE2:Hg19::chr17:19390211..19390223,+#_fa5dac382628a88712bb90b159b8a578p@chr17:19390211..19390223, +
4.01e-107FFCP PHASE1:Hg19::chr18:11751516..11751523,+#_08eb77a3672f5410361740f5c5dabb6ep17@GNAL
4.01e-107FFCP PHASE2:Hg19::chr18:11751516..11751523,+#_08eb77a3672f5410361740f5c5dabb6ep17@GNAL
1.41e-106FFCP PHASE1:Hg19::chr21:43917191..43917207,-#_46976897e9c60b24c9ccc65721f0b088p@chr21:43917191..43917207, -
1.41e-106FFCP PHASE2:Hg19::chr21:43917191..43917207,-#_46976897e9c60b24c9ccc65721f0b088p@chr21:43917191..43917207, -
3.33e-98FFCP PHASE2:Hg19::chr11:18765839..18765846,-#_ae6a4136b18e01e79196a7b20de4ffb6p10@PTPN5
3.33e-98FFCP PHASE1:Hg19::chr11:18765839..18765846,-#_ae6a4136b18e01e79196a7b20de4ffb6p10@PTPN5
1.43e-97FFCP PHASE2:Hg19::chr13:98995923..98995941,+#_4991ba70b790b6af522414f938175423p@chr13:98995923..98995941, +
1.43e-97FFCP PHASE1:Hg19::chr13:98995923..98995941,+#_4991ba70b790b6af522414f938175423p@chr13:98995923..98995941, +
4.08e-91FFCP PHASE1:Hg19::chr11:26497871..26497889,+#_32d6e86efcd91a6980ca715bb146874bp@chr11:26497871..26497889, +
4.08e-91FFCP PHASE2:Hg19::chr11:26497871..26497889,+#_32d6e86efcd91a6980ca715bb146874bp@chr11:26497871..26497889, +
4.08e-91FFCP PHASE2:Hg19::chr10:97261901..97261919,-#_32d6e86efcd91a6980ca715bb146874bp@chr10:97261901..97261919, -
4.08e-91FFCP PHASE1:Hg19::chr10:97261901..97261919,-#_32d6e86efcd91a6980ca715bb146874bp@chr10:97261901..97261919, -
4.91e-91FFCP PHASE2:Hg19::chr1:242372439..242372456,+#_2efd1da29a5838f559c36d7e739fbeafp1@ENST00000421878
4.91e-91FFCP PHASE2:Hg19::chr22:24828830..24828842,+#_2efd1da29a5838f559c36d7e739fbeafp14@ADORA2A
4.91e-91FFCP PHASE1:Hg19::chr1:242372439..242372456,+#_2efd1da29a5838f559c36d7e739fbeafp1@ENST00000421878
4.91e-91FFCP PHASE2:Hg19::chr19:1236637..1236645,-#_2efd1da29a5838f559c36d7e739fbeafp@chr19:1236637..1236645, -
4.91e-91FFCP PHASE1:Hg19::chr11:26495467..26495474,+#_2efd1da29a5838f559c36d7e739fbeafp8@ANO3
4.91e-91FFCP PHASE1:Hg19::chr22:24828830..24828842,+#_2efd1da29a5838f559c36d7e739fbeafp14@ADORA2A
4.91e-91FFCP PHASE1:Hg19::chr19:1236637..1236645,-#_2efd1da29a5838f559c36d7e739fbeafp@chr19:1236637..1236645, -
4.91e-91FFCP PHASE2:Hg19::chr11:26495467..26495474,+#_2efd1da29a5838f559c36d7e739fbeafp8@ANO3
1.7e-89FFCP PHASE1:Hg19::chr11:18765553..18765567,-#_ffdafaebf2235af8ad57110f3dd1bbf2p7@PTPN5
1.7e-89FFCP PHASE2:Hg19::chr1:174417095..174417131,+#_ffdafaebf2235af8ad57110f3dd1bbf2p1@GPR52
1.7e-89FFCP PHASE1:Hg19::chr1:174417095..174417131,+#_ffdafaebf2235af8ad57110f3dd1bbf2p1@GPR52
1.7e-89FFCP PHASE2:Hg19::chr11:18765553..18765567,-#_ffdafaebf2235af8ad57110f3dd1bbf2p7@PTPN5
2.51e-89FFCP PHASE1:Hg19::chr1:101003675..101003682,+#_9303c37abecc84eb427d5832e7bb60e9p5@GPR88
2.51e-89FFCP PHASE2:Hg19::chr1:101003675..101003682,+#_9303c37abecc84eb427d5832e7bb60e9p5@GPR88
2.86e-89FFCP PHASE1:Hg19::chr11:67174819..67174825,-#_cae21b9a4be687dc0f399bce17342b8dp14@PPP1CA
2.86e-89FFCP PHASE2:Hg19::chr11:67174819..67174825,-#_cae21b9a4be687dc0f399bce17342b8dp14@PPP1CA
4.81e-88FFCP PHASE2:Hg19::chr11:18765881..18765897,-#_244d039829e80ea2ddf7f9a0a577ec24p3@PTPN5
4.81e-88FFCP PHASE1:Hg19::chr11:18765881..18765897,-#_244d039829e80ea2ddf7f9a0a577ec24p3@PTPN5
1.33e-87FFCP PHASE1:Hg19::chr17:19390234..19390251,+#_e94c33d622d6188a65107a2928e5e0edp@chr17:19390234..19390251, +
1.33e-87FFCP PHASE2:Hg19::chr17:19390234..19390251,+#_e94c33d622d6188a65107a2928e5e0edp@chr17:19390234..19390251, +
1.37e-87FFCP PHASE2:Hg19::chr13:112726433..112726446,+#_657e0fada5ec13b87480eff5399013dcp@chr13:112726433..112726446, +
1.37e-87FFCP PHASE1:Hg19::chr14:78638610..78638621,+#_657e0fada5ec13b87480eff5399013dcp@chr14:78638610..78638621, +
1.37e-87FFCP PHASE1:Hg19::chr15:35546154..35546174,-#_657e0fada5ec13b87480eff5399013dcp@chr15:35546154..35546174, -
1.37e-87FFCP PHASE2:Hg19::chr8:25281776..25281779,-#_657e0fada5ec13b87480eff5399013dcp1@GNRH1
1.37e-87FFCP PHASE1:Hg19::chr7:22382758..22382765,-#_657e0fada5ec13b87480eff5399013dcp@chr7:22382758..22382765, -
1.37e-87FFCP PHASE1:Hg19::chr2:152828264..152828299,-#_657e0fada5ec13b87480eff5399013dcp@chr2:152828264..152828299, -
1.37e-87FFCP PHASE1:Hg19::chr7:29846088..29846091,+#_657e0fada5ec13b87480eff5399013dcp20@WIPF3
1.37e-87FFCP PHASE1:Hg19::chr18:47967428..47967437,-#_657e0fada5ec13b87480eff5399013dcp@chr18:47967428..47967437, -
1.37e-87FFCP PHASE2:Hg19::chr18:47967428..47967437,-#_657e0fada5ec13b87480eff5399013dcp@chr18:47967428..47967437, -
1.37e-87FFCP PHASE1:Hg19::chr1:31352916..31352926,-#_657e0fada5ec13b87480eff5399013dcp@chr1:31352916..31352926, -
1.37e-87FFCP PHASE1:Hg19::chr8:25281776..25281779,-#_657e0fada5ec13b87480eff5399013dcp1@GNRH1
1.37e-87FFCP PHASE2:Hg19::chr7:22382758..22382765,-#_657e0fada5ec13b87480eff5399013dcp@chr7:22382758..22382765, -
1.37e-87FFCP PHASE2:Hg19::chr12:6031299..6031315,-#_657e0fada5ec13b87480eff5399013dcp@chr12:6031299..6031315, -
1.37e-87FFCP PHASE2:Hg19::chr8:19799565..19799589,-#_657e0fada5ec13b87480eff5399013dcp@chr8:19799565..19799589, -
1.37e-87FFCP PHASE1:Hg19::chr8:19799565..19799589,-#_657e0fada5ec13b87480eff5399013dcp@chr8:19799565..19799589, -
1.37e-87FFCP PHASE2:Hg19::chr15:35546154..35546174,-#_657e0fada5ec13b87480eff5399013dcp@chr15:35546154..35546174, -
1.37e-87FFCP PHASE2:Hg19::chr1:31352916..31352926,-#_657e0fada5ec13b87480eff5399013dcp@chr1:31352916..31352926, -
1.37e-87FFCP PHASE2:Hg19::chr14:78638610..78638621,+#_657e0fada5ec13b87480eff5399013dcp@chr14:78638610..78638621, +
1.37e-87FFCP PHASE2:Hg19::chr2:152828264..152828299,-#_657e0fada5ec13b87480eff5399013dcp@chr2:152828264..152828299, -
1.37e-87FFCP PHASE1:Hg19::chr13:112726433..112726446,+#_657e0fada5ec13b87480eff5399013dcp@chr13:112726433..112726446, +
1.37e-87FFCP PHASE1:Hg19::chr12:6031299..6031315,-#_657e0fada5ec13b87480eff5399013dcp@chr12:6031299..6031315, -
1.37e-87FFCP PHASE2:Hg19::chr7:29846088..29846091,+#_657e0fada5ec13b87480eff5399013dcp20@WIPF3
1.79e-87FFCP PHASE2:Hg19::chr11:26495447..26495461,+#_2dd8a5b6c684afb8b93182c2e7cb72f2p5@ANO3
1.79e-87FFCP PHASE1:Hg19::chr10:73313437..73313451,-#_2dd8a5b6c684afb8b93182c2e7cb72f2p@chr10:73313437..73313451, -
1.79e-87FFCP PHASE2:Hg19::chr10:73313437..73313451,-#_2dd8a5b6c684afb8b93182c2e7cb72f2p@chr10:73313437..73313451, -
1.79e-87FFCP PHASE1:Hg19::chr11:26495447..26495461,+#_2dd8a5b6c684afb8b93182c2e7cb72f2p5@ANO3
2.08e-87FFCP PHASE1:Hg19::chr3:16851273..16851310,+#_d1e806f30c61330dd956ba8928b80aaep@chr3:16851273..16851310, +
2.08e-87FFCP PHASE2:Hg19::chr3:16851273..16851310,+#_d1e806f30c61330dd956ba8928b80aaep@chr3:16851273..16851310, +
2.42e-87FFCP PHASE1:Hg19::chr7:67899920..67899958,-#_43756d2384473b1f3d1c1e78c955dc2dp@chr7:67899920..67899958, -
2.42e-87FFCP PHASE2:Hg19::chr7:67899920..67899958,-#_43756d2384473b1f3d1c1e78c955dc2dp@chr7:67899920..67899958, -
2.8e-87FFCP PHASE2:Hg19::chr9:95569585..95569596,+#_327108ea77c24548bc464c03b9fd42f0p@chr9:95569585..95569596, +
2.8e-87FFCP PHASE1:Hg19::chr9:95569585..95569596,+#_327108ea77c24548bc464c03b9fd42f0p@chr9:95569585..95569596, +
4.39e-83FFCP PHASE2:Hg19::chr18:11751493..11751507,+#_7dc9429410976e45e6ba9b29cb57f6afp12@GNAL
4.39e-83FFCP PHASE1:Hg19::chr18:11751493..11751507,+#_7dc9429410976e45e6ba9b29cb57f6afp12@GNAL
3.09e-79FFCP PHASE1:Hg19::chr11:13461601..13461620,-#_0e61ba5547e08c709382ab07fef992bep5@BTBD10
3.09e-79FFCP PHASE2:Hg19::chr11:13461601..13461620,-#_0e61ba5547e08c709382ab07fef992bep5@BTBD10
5.29e-79FFCP PHASE2:Hg19::chr6:166076645..166076657,-#_9a692214552aa5bc608158b82ac14f54p@chr6:166076645..166076657, -
5.29e-79FFCP PHASE1:Hg19::chr6:166076645..166076657,-#_9a692214552aa5bc608158b82ac14f54p@chr6:166076645..166076657, -
6.06e-79FFCP PHASE2:Hg19::chr2:26781521..26781537,-#_f083c24d02c15983c535da5d02eb8071p2@OTOF
6.06e-79FFCP PHASE1:Hg19::chr22:27727719..27727726,+#_f083c24d02c15983c535da5d02eb8071p2@ENST00000413244
6.06e-79FFCP PHASE2:Hg19::chr11:18765589..18765610,-#_f083c24d02c15983c535da5d02eb8071p6@PTPN5
6.06e-79FFCP PHASE2:Hg19::chr22:27727719..27727726,+#_f083c24d02c15983c535da5d02eb8071p2@ENST00000413244
6.06e-79FFCP PHASE1:Hg19::chr2:26781521..26781537,-#_f083c24d02c15983c535da5d02eb8071p2@OTOF
6.06e-79FFCP PHASE1:Hg19::chr11:18765589..18765610,-#_f083c24d02c15983c535da5d02eb8071p6@PTPN5
6.93e-79FFCP PHASE2:Hg19::chr19:19640188..19640201,+#_a8cb6cf1f8f2ba31d8a77eb5139ac15bp@chr19:19640188..19640201, +
6.93e-79FFCP PHASE1:Hg19::chr19:19640188..19640201,+#_a8cb6cf1f8f2ba31d8a77eb5139ac15bp@chr19:19640188..19640201, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0010011&oldid=3277989"