UBERON:0004765
From FANTOM5_SSTAR
Name: | skeletal element | |
---|---|---|
Definition: | "Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [UBERON:cjm] | |
Xrefs: |
| |
Comments: | TODO - add more general class for other kinds of mineralized tissue | |
Subset: |
organ_slim uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000062(organ),UBERON:0004120(mesoderm-derived structure) |
---|---|
part_of: | UBERON:0001434(skeletal system) |
Children
is a: | UBERON:0001474 (bone element),UBERON:0004339 (calvarium),UBERON:0004637 (otic capsule),UBERON:0004756 (dermal skeletal element),UBERON:0007844 (cartilage element),UBERON:0010363 (endochondral element),UBERON:0010913 (vertebral element) |
---|---|
part of: | UBERON:0004755 (skeletal tissue) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10192-103E3 (bone marrow, adult)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10445-106F4
- 10474-106I6 (myeloma cell line:PCM6)
- 10479-107A2
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10551-107I2
- 10558-107I9 (osteosarcoma cell line:HS-Os-1)
- 10574-108B7
- 10586-108D1
... further results Mouse (Mus musculus)
- 10192-103E3 (bone marrow, adult)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10445-106F4
- 10474-106I6 (myeloma cell line:PCM6)
- 10479-107A2
- 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))
- 10551-107I2
- 10558-107I9 (osteosarcoma cell line:HS-Os-1)
- 10574-108B7
- 10586-108D1
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004765 (skeletal element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data