FFCP PHASE1:Hg19::chr12:66218836..66218888,+
From FANTOM5_SSTAR
Jump to: navigation, search
| Short description: | p1@HMGA2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_HMGA2_5end |
| Coexpression cluster: | C1682_schwannoma_Fibroblast_hepatoblastoma_Wilms_adrenal_Aortic_meningioma |
| Association with transcript: | -14bp_to_ENST00000393577_5end |
| EntrezGene: | HMGA2 |
| HGNC: | 5009 |
| UniProt: | F5H2A4 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@HMGA2 |
|---|
0
50
100
150
200
250
300
350
400
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| embryonic cell | 1.15e-32 | 250 |
| muscle precursor cell | 1.44e-18 | 58 |
| myoblast | 1.44e-18 | 58 |
| multi-potent skeletal muscle stem cell | 1.44e-18 | 58 |
| electrically responsive cell | 1.40e-17 | 61 |
| electrically active cell | 1.40e-17 | 61 |
| muscle cell | 4.02e-17 | 55 |
| epithelial cell | 7.85e-17 | 253 |
| mesodermal cell | 1.84e-16 | 121 |
| smooth muscle cell | 1.06e-15 | 43 |
Showing 1 to 10 of 16 entries
| Ontology term | p-value | n |
|---|---|---|
| multilaminar epithelium | 6.02e-21 | 83 |
| unilaminar epithelium | 1.79e-20 | 148 |
| epithelial vesicle | 1.05e-18 | 78 |
| somite | 4.30e-18 | 71 |
| presomitic mesoderm | 4.30e-18 | 71 |
| presumptive segmental plate | 4.30e-18 | 71 |
| dermomyotome | 4.30e-18 | 71 |
| trunk paraxial mesoderm | 4.30e-18 | 71 |
| mesenchyme | 5.86e-18 | 160 |
| entire embryonic mesenchyme | 5.86e-18 | 160 |
Showing 1 to 10 of 48 entries
