Personal tools

UBERON:0001000

From FANTOM5_SSTAR

Jump to: navigation, search

Name:vas deferens
Namespace:FANTOM
Definition:"duct that transports sperm from the testis. In mammals this is from the epididymis." [Wikipedia:Vas_deferens]
Xrefs:
links:

BTO:0001427
EFO:0000981
EMAPA:18681
EV:0100105
FMA:19234
GAID:404
galen:VasDeferens
[1]
[ 200px-Male_anatomy_en.svg.png 200px-Male_anatomy_en.svg.png]
MA:0000413
MESH:A.05.360.444.930
MIAA:0000129
ncithesaurus:Vas_Deferens
OpenCyc:Mx4rvjv7bpwpEbGdrcN5Y29ycA
SCTID:245467009

VHOG:0001135
Synonyms: "deferent duct" EXACT []
"ductus deferens" EXACT [Wikipedia:Vas_deferens]
"sperm duct" RELATED []
"vas deferen" EXACT []
"vasa deferentia" RELATED []
Comments:Taxon notes (from WP): Most vertebrates have some form of duct to transfer the sperm from the testes to the urethra. In cartilaginous fish and amphibians, sperm is carried through the archinephric duct, which also partially helps to transport urine from the kidneys. In teleosts, there is a distinct sperm duct, separate from the ureters, and often called the vas deferens, although probably not truly homologous with that in humans. In cartilaginous fishes, the part of the archinephric duct closest to the testis is coiled up to form an epididymis. Below this are a number of small glands secreting components of the seminal fluid. The final portion of the duct also receives ducts from the kidneys in most species. In amniotes, however, the archinephric duct has become a true vas deferens, and is used only for conducting sperm, never urine. As in cartilaginous fish, the upper part of the duct forms the epididymis. In many species, the vas deferens ends in a small sac for storing sperm. The only vertebrates to lack any structure resembling a vas deferens are the primitive jawless fishes, which release sperm directly into the body cavity, and then into the surrounding water through a simple opening in the body wall.
Alt_id: UBERON:FBbt_00004968-FMA_19234-MA_0000413-MIAA_0000129-WBbt_0005337
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005904(duct of male reproductive system)
part_of:UBERON:0005352(spermatic cord),UBERON:0006947(male genital duct)



Children

derives from:FF:0010196 (human ductus deferens - adult sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001000 (vas deferens), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.37e-99FFCP PHASE2:Hg19::chr2:18887940..18887947,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr2:18887940..18887947, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836225..43836234,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836225..43836234, -
9.37e-99FFCP PHASE2:Hg19::chr5:179511281..179511283,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr5:179511281..179511283, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836115..43836122,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836115..43836122, -
9.37e-99FFCP PHASE2:Hg19::chr11:30182693..30182698,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr11:30182693..30182698, -
9.37e-99FFCP PHASE1:Hg19::chr20:43853046..43853053,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43853046..43853053, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836771..43836789,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836771..43836789, -
9.37e-99FFCP PHASE1:Hg19::chr19:15731989..15732000,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr19:15731989..15732000, +
9.37e-99FFCP PHASE1:Hg19::chr15:91849948..91849962,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr15:91849948..91849962, +
9.37e-99FFCP PHASE1:Hg19::chr2:219942197..219942226,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr2:219942197..219942226, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836518..43836524,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836518..43836524, -
9.37e-99FFCP PHASE1:Hg19::chr12:126515178..126515204,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr12:126515178..126515204, +
9.37e-99FFCP PHASE1:Hg19::chr11:1032745..1032750,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr11:1032745..1032750, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836666..43836681,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836666..43836681, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836287..43836295,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836287..43836295, -
9.37e-99FFCP PHASE1:Hg19::chr20:43838343..43838355,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43838343..43838355, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836620..43836625,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836620..43836625, -
9.37e-99FFCP PHASE1:Hg19::chr11:34592440..34592452,+#_f5f8fb71caeaa0af11fbf434c3e0426dp1@ENST00000527135
9.37e-99FFCP PHASE2:Hg19::chr20:43835380..43835384,+#_f5f8fb71caeaa0af11fbf434c3e0426dp2@SEMG1, p3@SEMG2
9.37e-99FFCP PHASE1:Hg19::chr19:15732081..15732088,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr19:15732081..15732088, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836544..43836571,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836544..43836571, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836225..43836234,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836225..43836234, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836329..43836334,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836329..43836334, -
9.37e-99FFCP PHASE2:Hg19::chr4:42942084..42942100,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr4:42942084..42942100, +
9.37e-99FFCP PHASE2:Hg19::chr20:43853046..43853053,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43853046..43853053, +
9.37e-99FFCP PHASE2:Hg19::chr19:15731989..15732000,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr19:15731989..15732000, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836942..43836962,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836942..43836962, -
9.37e-99FFCP PHASE1:Hg19::chr1:25179461..25179463,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr1:25179461..25179463, +
9.37e-99FFCP PHASE2:Hg19::chr2:219942197..219942226,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr2:219942197..219942226, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836696..43836705,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836696..43836705, -
9.37e-99FFCP PHASE2:Hg19::chr20:43850505..43850516,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43850505..43850516, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836486..43836506,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836486..43836506, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836912..43836919,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836912..43836919, -
9.37e-99FFCP PHASE1:Hg19::chr11:30182693..30182698,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr11:30182693..30182698, -
9.37e-99FFCP PHASE1:Hg19::chr2:223648293..223648295,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr2:223648293..223648295, +
9.37e-99FFCP PHASE2:Hg19::chr6:70856430..70856440,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr6:70856430..70856440, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836771..43836789,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836771..43836789, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836518..43836524,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836518..43836524, -
9.37e-99FFCP PHASE2:Hg19::chr15:91849918..91849931,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr15:91849918..91849931, +
9.37e-99FFCP PHASE1:Hg19::chr6:70856430..70856440,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr6:70856430..70856440, +
9.37e-99FFCP PHASE2:Hg19::chr19:15732081..15732088,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr19:15732081..15732088, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836170..43836181,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836170..43836181, -
9.37e-99FFCP PHASE2:Hg19::chr11:1032745..1032750,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr11:1032745..1032750, -
9.37e-99FFCP PHASE1:Hg19::chr1:26217127..26217131,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr1:26217127..26217131, +
9.37e-99FFCP PHASE1:Hg19::chr20:43853005..43853012,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43853005..43853012, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836329..43836334,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836329..43836334, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836666..43836681,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836666..43836681, -
9.37e-99FFCP PHASE2:Hg19::chr12:126515178..126515204,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr12:126515178..126515204, +
9.37e-99FFCP PHASE2:Hg19::chr20:43838343..43838355,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43838343..43838355, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836267..43836284,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836267..43836284, -
9.37e-99FFCP PHASE2:Hg19::chr1:25179461..25179463,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr1:25179461..25179463, +
9.37e-99FFCP PHASE1:Hg19::chr2:18887940..18887947,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr2:18887940..18887947, +
9.37e-99FFCP PHASE1:Hg19::chr10:25623518..25623540,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr10:25623518..25623540, -
9.37e-99FFCP PHASE1:Hg19::chr5:179511281..179511283,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr5:179511281..179511283, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836115..43836122,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836115..43836122, -
9.37e-99FFCP PHASE2:Hg19::chr10:25623518..25623540,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr10:25623518..25623540, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836486..43836506,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836486..43836506, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836620..43836625,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836620..43836625, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836544..43836571,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836544..43836571, -
9.37e-99FFCP PHASE2:Hg19::chr15:91849948..91849962,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr15:91849948..91849962, +
9.37e-99FFCP PHASE2:Hg19::chr2:223648293..223648295,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr2:223648293..223648295, +
9.37e-99FFCP PHASE2:Hg19::chr11:34592440..34592452,+#_f5f8fb71caeaa0af11fbf434c3e0426dp1@ENST00000527135
9.37e-99FFCP PHASE2:Hg19::chrX:152622610..152622615,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chrX:152622610..152622615, +
9.37e-99FFCP PHASE1:Hg19::chr15:91849918..91849931,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr15:91849918..91849931, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836696..43836705,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836696..43836705, -
9.37e-99FFCP PHASE1:Hg19::chr4:42942084..42942100,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr4:42942084..42942100, +
9.37e-99FFCP PHASE2:Hg19::chr20:43836170..43836181,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836170..43836181, -
9.37e-99FFCP PHASE1:Hg19::chrX:152622610..152622615,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chrX:152622610..152622615, +
9.37e-99FFCP PHASE1:Hg19::chr20:43836287..43836295,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836287..43836295, -
9.37e-99FFCP PHASE1:Hg19::chr20:43836942..43836962,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836942..43836962, -
9.37e-99FFCP PHASE2:Hg19::chr1:26217127..26217131,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr1:26217127..26217131, +
9.37e-99FFCP PHASE2:Hg19::chr20:43853005..43853012,+#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43853005..43853012, +
9.37e-99FFCP PHASE1:Hg19::chr20:43850505..43850516,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43850505..43850516, -
9.37e-99FFCP PHASE2:Hg19::chr20:43836912..43836919,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836912..43836919, -
9.37e-99FFCP PHASE1:Hg19::chr20:43835380..43835384,+#_f5f8fb71caeaa0af11fbf434c3e0426dp2@SEMG1, p3@SEMG2
9.37e-99FFCP PHASE2:Hg19::chr20:43836267..43836284,-#_f5f8fb71caeaa0af11fbf434c3e0426dp@chr20:43836267..43836284, -
2.55e-98FFCP PHASE1:Hg19::chr20:43837223..43837282,+#_33b92fa9a57a5a2285608df99a96ebc7p@chr20:43837223..43837282, +
2.55e-98FFCP PHASE1:Hg19::chr22:32000571..32000593,+#_33b92fa9a57a5a2285608df99a96ebc7p12@SFI1
2.55e-98FFCP PHASE2:Hg19::chr19:15733072..15733082,+#_33b92fa9a57a5a2285608df99a96ebc7p@chr19:15733072..15733082, +
2.55e-98FFCP PHASE2:Hg19::chr11:69715408..69715418,-#_33b92fa9a57a5a2285608df99a96ebc7p@chr11:69715408..69715418, -
2.55e-98FFCP PHASE1:Hg19::chr20:43850927..43850931,+#_33b92fa9a57a5a2285608df99a96ebc7p@chr20:43850927..43850931, +
2.55e-98FFCP PHASE1:Hg19::chr10:33624965..33624969,-#_33b92fa9a57a5a2285608df99a96ebc7p@chr10:33624965..33624969, -
2.55e-98FFCP PHASE2:Hg19::chr20:43838283..43838286,+#_33b92fa9a57a5a2285608df99a96ebc7p@chr20:43838283..43838286, +
2.55e-98FFCP PHASE1:Hg19::chr11:125657972..125657979,+#_33b92fa9a57a5a2285608df99a96ebc7p4@PATE3
2.55e-98FFCP PHASE1:Hg19::chr17:2279627..2279651,+#_33b92fa9a57a5a2285608df99a96ebc7p2@SGSM2
2.55e-98FFCP PHASE1:Hg19::chr7:20655284..20655295,+#_33b92fa9a57a5a2285608df99a96ebc7p5@ABCB5
2.55e-98FFCP PHASE2:Hg19::chr20:43851172..43851181,+#_33b92fa9a57a5a2285608df99a96ebc7p@chr20:43851172..43851181, +
2.55e-98FFCP PHASE2:Hg19::chr1:24982271..24982281,+#_33b92fa9a57a5a2285608df99a96ebc7p@chr1:24982271..24982281, +
2.55e-98FFCP PHASE2:Hg19::chr10:33624965..33624969,-#_33b92fa9a57a5a2285608df99a96ebc7p@chr10:33624965..33624969, -
2.55e-98FFCP PHASE1:Hg19::chr2:177684007..177684011,-#_33b92fa9a57a5a2285608df99a96ebc7p1@ENST00000451851
2.55e-98FFCP PHASE2:Hg19::chr20:43852004..43852005,+#_33b92fa9a57a5a2285608df99a96ebc7p@chr20:43852004..43852005, +
2.55e-98FFCP PHASE2:Hg19::chr19:15729846..15729851,+#_33b92fa9a57a5a2285608df99a96ebc7p@chr19:15729846..15729851, +
2.55e-98FFCP PHASE1:Hg19::chr20:43850640..43850649,+#_33b92fa9a57a5a2285608df99a96ebc7p@chr20:43850640..43850649, +
2.55e-98FFCP PHASE2:Hg19::chr20:43837135..43837167,+#_33b92fa9a57a5a2285608df99a96ebc7p@chr20:43837135..43837167, +
2.55e-98FFCP PHASE1:Hg19::chr20:43836085..43836090,+#_33b92fa9a57a5a2285608df99a96ebc7p@chr20:43836085..43836090, +
2.55e-98FFCP PHASE2:Hg19::chr16:55909231..55909242,-#_33b92fa9a57a5a2285608df99a96ebc7p2@CES5A
2.55e-98FFCP PHASE2:Hg19::chr10:98351232..98351244,+#_33b92fa9a57a5a2285608df99a96ebc7p@chr10:98351232..98351244, +
2.55e-98FFCP PHASE2:Hg19::chr20:43850844..43850864,+#_33b92fa9a57a5a2285608df99a96ebc7p@chr20:43850844..43850864, +
2.55e-98FFCP PHASE1:Hg19::chr1:183230812..183230815,-#_33b92fa9a57a5a2285608df99a96ebc7p@chr1:183230812..183230815, -
2.55e-98FFCP PHASE2:Hg19::chr20:43851737..43851742,+#_33b92fa9a57a5a2285608df99a96ebc7p@chr20:43851737..43851742, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001000&oldid=3277168"