UBERON:0005352

Name:	spermatic cord
Namespace:	FANTOM
Definition:	"the cord-like structure in males comprising the vas deferens and associated tissue that runs from the abdomen down to each testis[MP]. cord-like structure in males formed by the vas deferens and surrounding tissue that run from the abdomen down to each testicle[WP]." [MP:0010145, Wikipedia:Spermatic_cord]
Xrefs:	Expandlinks: FMA:19937 GAID:395 [ Male_anatomy.png] [ 200px-Male_anatomy.png] MESH:A.05.360.444.777 ncithesaurus:Spermatic_Cord SCTID:181433005
Synonyms:	"funiculus spermaticus" RELATED LATIN [Wikipedia:Spermatic_cord] "spermatic chord" RELATED []

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0000477(anatomical cluster),UBERON:0005156(reproductive structure),UBERON:0014403(male anatomical structure)
part_of:	UBERON:0004054(internal male genitalia)

Children

part of:	UBERON:0001000 (vas deferens)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Human (Homo sapiens)

• 10196-103E7 (ductus deferens, adult)

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005352 (spermatic cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
9.37e-99	FFCP PHASE1:Hg19::chr1:25179461..25179463,+	p@chr1:25179461..25179463, +
9.37e-99	FFCP PHASE2:Hg19::chr2:219942197..219942226,+	p@chr2:219942197..219942226, +
9.37e-99	FFCP PHASE1:Hg19::chr20:43836696..43836705,-	p@chr20:43836696..43836705, -
9.37e-99	FFCP PHASE2:Hg19::chr20:43836942..43836962,-	p@chr20:43836942..43836962, -
9.37e-99	FFCP PHASE2:Hg19::chr20:43850505..43850516,-	p@chr20:43850505..43850516, -
9.37e-99	FFCP PHASE1:Hg19::chr20:43836486..43836506,-	p@chr20:43836486..43836506, -
9.37e-99	FFCP PHASE1:Hg19::chr20:43836912..43836919,-	p@chr20:43836912..43836919, -
9.37e-99	FFCP PHASE1:Hg19::chr2:223648293..223648295,+	p@chr2:223648293..223648295, +
9.37e-99	FFCP PHASE2:Hg19::chr20:43836771..43836789,-	p@chr20:43836771..43836789, -
9.37e-99	FFCP PHASE2:Hg19::chr15:91849918..91849931,+	p@chr15:91849918..91849931, +
9.37e-99	FFCP PHASE2:Hg19::chr20:43836518..43836524,-	p@chr20:43836518..43836524, -
9.37e-99	FFCP PHASE1:Hg19::chr20:43836170..43836181,-	p@chr20:43836170..43836181, -
9.37e-99	FFCP PHASE2:Hg19::chr11:1032745..1032750,-	p@chr11:1032745..1032750, -
9.37e-99	FFCP PHASE1:Hg19::chr6:70856430..70856440,+	p@chr6:70856430..70856440, +
9.37e-99	FFCP PHASE2:Hg19::chr19:15732081..15732088,+	p@chr19:15732081..15732088, +
9.37e-99	FFCP PHASE1:Hg19::chr11:1032745..1032750,-	p@chr11:1032745..1032750, -
9.37e-99	FFCP PHASE1:Hg19::chr1:26217127..26217131,+	p@chr1:26217127..26217131, +
9.37e-99	FFCP PHASE1:Hg19::chr20:43853005..43853012,+	p@chr20:43853005..43853012, +
9.37e-99	FFCP PHASE2:Hg19::chr12:126515178..126515204,+	p@chr12:126515178..126515204, +
9.37e-99	FFCP PHASE2:Hg19::chr20:43836329..43836334,-	p@chr20:43836329..43836334, -
9.37e-99	FFCP PHASE2:Hg19::chr20:43836666..43836681,-	p@chr20:43836666..43836681, -
9.37e-99	FFCP PHASE1:Hg19::chr11:34592440..34592452,+	p1@ENST00000527135
9.37e-99	FFCP PHASE1:Hg19::chr20:43836267..43836284,-	p@chr20:43836267..43836284, -
9.37e-99	FFCP PHASE2:Hg19::chr20:43838343..43838355,+	p@chr20:43838343..43838355, +
9.37e-99	FFCP PHASE1:Hg19::chr20:43836115..43836122,-	p@chr20:43836115..43836122, -
9.37e-99	FFCP PHASE2:Hg19::chr1:25179461..25179463,+	p@chr1:25179461..25179463, +
9.37e-99	FFCP PHASE1:Hg19::chr2:18887940..18887947,+	p@chr2:18887940..18887947, +
9.37e-99	FFCP PHASE1:Hg19::chr5:179511281..179511283,+	p@chr5:179511281..179511283, +
9.37e-99	FFCP PHASE1:Hg19::chr20:43836620..43836625,-	p@chr20:43836620..43836625, -
9.37e-99	FFCP PHASE2:Hg19::chr10:25623518..25623540,-	p@chr10:25623518..25623540, -
9.37e-99	FFCP PHASE2:Hg19::chr20:43836486..43836506,-	p@chr20:43836486..43836506, -
9.37e-99	FFCP PHASE1:Hg19::chr10:25623518..25623540,-	p@chr10:25623518..25623540, -
9.37e-99	FFCP PHASE2:Hg19::chr15:91849948..91849962,+	p@chr15:91849948..91849962, +
9.37e-99	FFCP PHASE2:Hg19::chr20:43836544..43836571,-	p@chr20:43836544..43836571, -
9.37e-99	FFCP PHASE2:Hg19::chr2:223648293..223648295,+	p@chr2:223648293..223648295, +
9.37e-99	FFCP PHASE2:Hg19::chr11:34592440..34592452,+	p1@ENST00000527135
9.37e-99	FFCP PHASE1:Hg19::chr15:91849918..91849931,+	p@chr15:91849918..91849931, +
9.37e-99	FFCP PHASE2:Hg19::chr20:43836696..43836705,-	p@chr20:43836696..43836705, -
9.37e-99	FFCP PHASE1:Hg19::chr4:42942084..42942100,+	p@chr4:42942084..42942100, +
9.37e-99	FFCP PHASE1:Hg19::chrX:152622610..152622615,+	p@chrX:152622610..152622615, +
9.37e-99	FFCP PHASE1:Hg19::chr20:43836287..43836295,-	p@chr20:43836287..43836295, -
9.37e-99	FFCP PHASE2:Hg19::chr20:43836170..43836181,-	p@chr20:43836170..43836181, -
9.37e-99	FFCP PHASE2:Hg19::chr6:70856430..70856440,+	p@chr6:70856430..70856440, +
9.37e-99	FFCP PHASE1:Hg19::chr20:43836942..43836962,-	p@chr20:43836942..43836962, -
9.37e-99	FFCP PHASE2:Hg19::chr1:26217127..26217131,+	p@chr1:26217127..26217131, +
9.37e-99	FFCP PHASE2:Hg19::chr20:43853005..43853012,+	p@chr20:43853005..43853012, +
9.37e-99	FFCP PHASE1:Hg19::chr11:30182693..30182698,-	p@chr11:30182693..30182698, -
9.37e-99	FFCP PHASE1:Hg19::chr20:43850505..43850516,-	p@chr20:43850505..43850516, -
9.37e-99	FFCP PHASE2:Hg19::chr20:43836912..43836919,-	p@chr20:43836912..43836919, -
9.37e-99	FFCP PHASE1:Hg19::chr20:43835380..43835384,+	p2@SEMG1, p3@SEMG2
9.37e-99	FFCP PHASE2:Hg19::chr20:43836267..43836284,-	p@chr20:43836267..43836284, -
9.37e-99	FFCP PHASE1:Hg19::chr20:43836225..43836234,-	p@chr20:43836225..43836234, -
9.37e-99	FFCP PHASE2:Hg19::chr5:179511281..179511283,+	p@chr5:179511281..179511283, +
9.37e-99	FFCP PHASE2:Hg19::chr20:43836115..43836122,-	p@chr20:43836115..43836122, -
9.37e-99	FFCP PHASE2:Hg19::chr2:18887940..18887947,+	p@chr2:18887940..18887947, +
9.37e-99	FFCP PHASE2:Hg19::chr11:30182693..30182698,-	p@chr11:30182693..30182698, -
9.37e-99	FFCP PHASE1:Hg19::chr20:43853046..43853053,+	p@chr20:43853046..43853053, +
9.37e-99	FFCP PHASE1:Hg19::chr20:43836771..43836789,-	p@chr20:43836771..43836789, -
9.37e-99	FFCP PHASE1:Hg19::chr19:15731989..15732000,+	p@chr19:15731989..15732000, +
9.37e-99	FFCP PHASE1:Hg19::chr20:43836518..43836524,-	p@chr20:43836518..43836524, -
9.37e-99	FFCP PHASE1:Hg19::chr15:91849948..91849962,+	p@chr15:91849948..91849962, +
9.37e-99	FFCP PHASE1:Hg19::chr2:219942197..219942226,+	p@chr2:219942197..219942226, +
9.37e-99	FFCP PHASE1:Hg19::chr12:126515178..126515204,+	p@chr12:126515178..126515204, +
9.37e-99	FFCP PHASE1:Hg19::chr20:43836666..43836681,-	p@chr20:43836666..43836681, -
9.37e-99	FFCP PHASE2:Hg19::chrX:152622610..152622615,+	p@chrX:152622610..152622615, +
9.37e-99	FFCP PHASE2:Hg19::chr20:43836287..43836295,-	p@chr20:43836287..43836295, -
9.37e-99	FFCP PHASE1:Hg19::chr20:43838343..43838355,+	p@chr20:43838343..43838355, +
9.37e-99	FFCP PHASE2:Hg19::chr20:43836620..43836625,-	p@chr20:43836620..43836625, -
9.37e-99	FFCP PHASE2:Hg19::chr20:43835380..43835384,+	p2@SEMG1, p3@SEMG2
9.37e-99	FFCP PHASE1:Hg19::chr19:15732081..15732088,+	p@chr19:15732081..15732088, +
9.37e-99	FFCP PHASE1:Hg19::chr20:43836544..43836571,-	p@chr20:43836544..43836571, -
9.37e-99	FFCP PHASE1:Hg19::chr20:43836329..43836334,-	p@chr20:43836329..43836334, -
9.37e-99	FFCP PHASE2:Hg19::chr4:42942084..42942100,+	p@chr4:42942084..42942100, +
9.37e-99	FFCP PHASE2:Hg19::chr20:43836225..43836234,-	p@chr20:43836225..43836234, -
9.37e-99	FFCP PHASE2:Hg19::chr20:43853046..43853053,+	p@chr20:43853046..43853053, +
9.37e-99	FFCP PHASE2:Hg19::chr19:15731989..15732000,+	p@chr19:15731989..15732000, +
2.55e-98	FFCP PHASE2:Hg19::chr20:44330731..44330738,+	p3@WFDC13
2.55e-98	FFCP PHASE2:Hg19::chr20:43850750..43850755,+	p@chr20:43850750..43850755, +
2.55e-98	FFCP PHASE2:Hg19::chr11:1025034..1025037,-	p@chr11:1025034..1025037, -
2.55e-98	FFCP PHASE1:Hg19::chr20:43852958..43852972,+	p@chr20:43852958..43852972, +
2.55e-98	FFCP PHASE1:Hg19::chr19:15730135..15730149,+	p@chr19:15730135..15730149, +
2.55e-98	FFCP PHASE1:Hg19::chr14:21059530..21059539,-	p@chr14:21059530..21059539, -
2.55e-98	FFCP PHASE2:Hg19::chr20:43851935..43851976,+	p@chr20:43851935..43851976, +
2.55e-98	FFCP PHASE1:Hg19::chr3:49699854..49699887,+	p@chr3:49699854..49699887, +
2.55e-98	FFCP PHASE1:Hg19::chr20:43850545..43850564,+	p@chr20:43850545..43850564, +
2.55e-98	FFCP PHASE1:Hg19::chr20:43851353..43851363,+	p@chr20:43851353..43851363, +
2.55e-98	FFCP PHASE1:Hg19::chr11:34816713..34816719,-	p@chr11:34816713..34816719, -
2.55e-98	FFCP PHASE1:Hg19::chr20:43851831..43851874,+	p@chr20:43851831..43851874, +
2.55e-98	FFCP PHASE2:Hg19::chr20:43851568..43851570,+	p@chr20:43851568..43851570, +
2.55e-98	FFCP PHASE2:Hg19::chr15:25165137..25165145,+	p@chr15:25165137..25165145, +
2.55e-98	FFCP PHASE1:Hg19::chr20:44259941..44259944,-	p4@WFDC9
2.55e-98	FFCP PHASE2:Hg19::chr13:90858329..90858339,-	p@chr13:90858329..90858339, -
2.55e-98	FFCP PHASE2:Hg19::chr20:44207890..44207899,-	p2@WFDC8
2.55e-98	FFCP PHASE1:Hg19::chr11:1025034..1025037,-	p@chr11:1025034..1025037, -
2.55e-98	FFCP PHASE1:Hg19::chr8:142335166..142335176,+	p@chr8:142335166..142335176, +
2.55e-98	FFCP PHASE1:Hg19::chr20:43851454..43851459,+	p@chr20:43851454..43851459, +
2.55e-98	FFCP PHASE2:Hg19::chr20:43851312..43851315,+	p@chr20:43851312..43851315, +
2.55e-98	FFCP PHASE2:Hg19::chr20:43836142..43836161,+	p@chr20:43836142..43836161, +
2.55e-98	FFCP PHASE1:Hg19::chr20:44144280..44144288,-	p2@SPINT3
2.55e-98	FFCP PHASE1:Hg19::chr20:43837283..43837290,+	p@chr20:43837283..43837290, +

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