UBERON:0001231
From FANTOM5_SSTAR
Name: | nephron tubule | |
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Namespace: | FANTOM | |
Definition: | "An epithelial tube that is part of the nephron, the functional part of the kidney." [GO:0072078, Wikipedia:Renal_tubule] | |
Xrefs: |
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Synonyms: |
"kidney tubule" EXACT [GAID:433] "renal tubule" BROAD [] "tubulus renalis" EXACT [] "uriniferous tubule" RELATED [MA:0000377] | |
Comments: | note that in ISBN10:0073040584 "Vertebrates, Kardong", the uriniferous tubule contains the nephron, so we have a separate class, rather than using a synonym, as in MA | |
Alt_id: |
UBERON:0004210 UBERON:FMA_15627-ZFA_0001287 | |
Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0004211(nephron epithelium),UBERON:0009773(renal tubule) |
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develops_from: | UBERON:0003918(kidney mesenchyme) |
part_of: | UBERON:0001285(nephron) |
Children
is a: | UBERON:0004198 (comma-shaped body),UBERON:0007685 (region of nephron tubule) |
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part of: | UBERON:0004134 (proximal tubule),UBERON:0004810 (nephron tubule epithelium),UBERON:0007685 (region of nephron tubule),CL:1000494 (nephron tubule epithelial cell),CL:1000507 (kidney tubule cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11517-119H5 (Renal Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11596-120H3 (Renal Cortical Epithelial Cells, donor2)
- 11597-120H4 (Renal Epithelial Cells, donor2)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
- 11677-122H3
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001231 (nephron tubule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data