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UBERON:0001231

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Name:nephron tubule
Namespace:FANTOM
Definition:"An epithelial tube that is part of the nephron, the functional part of the kidney." [GO:0072078, Wikipedia:Renal_tubule]
Xrefs:
links:

BTO:0000343
EFO:0003666
EMAPA:27782
EV:0100387
FMA:15627
GAID:433
MA:0000377
MESH:A.05.810.453.736.560
ncithesaurus:Renal_Tubule
SCTID:361332007
TAO:0001287

ZFA:0001287
Synonyms: "kidney tubule" EXACT [GAID:433]
"renal tubule" BROAD []
"tubulus renalis" EXACT []
"uriniferous tubule" RELATED [MA:0000377]
Comments:note that in ISBN10:0073040584 "Vertebrates, Kardong", the uriniferous tubule contains the nephron, so we have a separate class, rather than using a synonym, as in MA
Alt_id: UBERON:0004210
UBERON:FMA_15627-ZFA_0001287
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004211(nephron epithelium),UBERON:0009773(renal tubule)
develops_from:UBERON:0003918(kidney mesenchyme)
part_of:UBERON:0001285(nephron)



Children

is a:UBERON:0004198 (comma-shaped body),UBERON:0007685 (region of nephron tubule)
part of:UBERON:0004134 (proximal tubule),UBERON:0004810 (nephron tubule epithelium),UBERON:0007685 (region of nephron tubule),CL:1000494 (nephron tubule epithelial cell),CL:1000507 (kidney tubule cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001231 (nephron tubule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data