UBERON:0002370: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 4: | Line 4: | ||
|namespace= | |namespace= | ||
|def="Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [NLM:thymus, Wikipedia:Thymus] | |def="Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [NLM:thymus, Wikipedia:Thymus] | ||
|xref=AAO:0010548;;BTO:0001374;;EFO:0000860;; | |xref=AAO:0010548;;BTO:0001374;;EFO:0000860;;EHDAA2:0002017;;EHDAA:9119;;EMAPA:18768;;EV:0100138;;FMA:9607;;GAID:464;;http://upload.wikimedia.org/wikipedia/commons/c/cf/Illu_thymus.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Illu_thymus.jpg/200px-Illu_thymus.jpg;;MA:0000142;;MAT:0000080;;MESH:A.06.407.850;;MIAA:0000080;;ncithesaurus:Thymus_Gland;;OpenCyc:Mx4rvpIympwpEbGdrcN5Y29ycA;;SCTID:118507000;;TAO:0001078;;VHOG:0000253;;XAO:0000163;;ZFA:0001078 | ||
|is_a=UBERON:0000077;;UBERON:0002368;;UBERON:0004177;;UBERON:0005057;;UBERON:0005058 | |is_a=UBERON:0000077;;UBERON:0002368;;UBERON:0004177;;UBERON:0005057;;UBERON:0005058 | ||
|synonym="thymus gland" EXACT [] | |synonym="thymus gland" EXACT [] | ||
Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=major_organ;;organ_slim;;uberon_slim;;vertebrate_core | |subset=major_organ;;organ_slim;;uberon_slim;;vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure which originates as several paired thickenings on the dorsal side of the pharyngeal pouches and secretes thymosin.[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} |
Revision as of 17:02, 26 June 2012
Name: | thymus | ||
---|---|---|---|
Definition: | "Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [NLM:thymus, Wikipedia:Thymus] | ||
Xrefs: |
| ||
Synonyms: | "thymus gland" EXACT [] | ||
Comments: | check - a subtype of gland? not in GO. NCIT has thymus and thymus gland. EHDAA2 has ductless gland | ||
Alt_id: | UBERON:FMA_9607-MA_0000142-MIAA_0000080-XAO_0000163-ZFA_0001078 | ||
Subset: |
major_organ organ_slim uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0002368(endocrine gland),UBERON:0004177(hemopoietic organ),UBERON:0005057(immune organ),UBERON:0005058(hemolymphoid system gland) |
---|
Children
derives from: | FF:0010027 (thymus - adult human sample),FF:0010043 (human thymus - fetal sample),FF:0011280 (mouse thymus- neonate N02 sample),FF:0011304 (mouse thymus- neonate N03 sample),FF:0011329 (mouse thymus- adult sample),FF:0011336 (mouse thymus- embryo E14 sample),FF:0011346 (mouse thymus- embryo E15 sample),FF:0011355 (mouse thymus- embryo E16 sample),FF:0011366 (mouse thymus- embryo E17 sample),FF:0011401 (mouse thymus- neonate N06 sample),FF:0011407 (mouse thymus- neonate N07 sample),FF:0011413 (mouse thymus- neonate N10 sample),FF:0011426 (mouse thymus- neonate N20 sample),FF:0011496 (mouse thymus- neonate N25 sample),FF:0011497 (mouse thymus- neonate N30 sample),FF:0011516 (mouse thymus- embryo E18 sample),FF:0101455 (thymic carcinoma cell sample) |
---|---|
part of: | CL:0000809 (double-positive, alpha-beta thymocyte),CL:0000810 (CD4-positive, alpha-beta thymocyte),CL:0000893 (thymocyte),CL:0000894 (DN1 thymic pro-T cell),CL:0002293 (epithelial cell of thymus) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10027-101D9 (thymus, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
- 10097-102C7
- 10803-111A2 (thymic carcinoma cell line:Ty-82)
- 1273-19G4 (thymus, embryo E18)
- 12971-138H1 (TSt-4/DLL1 feeder cells, biol_rep1)
- 12987-138I8 (TSt-4/DLL1 feeder cells, biol_rep2)
- 13003-139B6 (TSt-4/DLL1 feeder cells, biol_rep3)
- 1362-25G7 (thymus, neonate N25)
- 1393-42G2 (thymus, neonate N30)
... further results Mouse (Mus musculus)
- 10027-101D9 (thymus, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
- 10097-102C7
- 10803-111A2 (thymic carcinoma cell line:Ty-82)
- 1273-19G4 (thymus, embryo E18)
- 12971-138H1 (TSt-4/DLL1 feeder cells, biol_rep1)
- 12987-138I8 (TSt-4/DLL1 feeder cells, biol_rep2)
- 13003-139B6 (TSt-4/DLL1 feeder cells, biol_rep3)
- 1362-25G7 (thymus, neonate N25)
- 1393-42G2 (thymus, neonate N30)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002370 (thymus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which originates as several paired thickenings on the dorsal side of the pharyngeal pouches and secretes thymosin.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.