Personal tools

User:Hisa: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 27: Line 27:
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
@import "/resource_browser/rb_js/datatables/extras/TableTools/media/css/TableTools.css";
.table_title{
text-align:left;
font-size:small;
text-decoration:underline;
color:dimgray;
}
</style>
</style>
<script type="text/javascript">
<script type="text/javascript">
Line 38: Line 44:
// "iDisplayLength": -1,
// "iDisplayLength": -1,
// "aLengthMenu": [[10, 25, 100, -1], [10, 25, 100, "All"]],
// "aLengthMenu": [[10, 25, 100, -1], [10, 25, 100, "All"]],
"aoColumnDefs": [ { "asSorting": [ "desc", "asc" ], "aTargets": [ "_all" ] }  , { "bSortable": false, "aTargets": [ 0 ] },  { "sType": "numeric", "aTargets": [1] }],
"aoColumnDefs": [ { "asSorting": [ "desc", "asc" ], "aTargets": [ "_all" ] }  , { "bSortable": false, "aTargets": [ 0 ] },  { "sType": "numeric", "aTargets": [1] }, { "sWidth": "50pt", "aTargets": [ 1 ] }],
"aaSorting": [[ 1, "desc" ]]
"aaSorting": [[ 1, "desc" ]]
});
});
Line 48: Line 54:


<div style="float:left;width:33%;">
<div style="float:left;width:33%;">
<table class="enrichment_list"><caption style="text-align:left;font-size:small">Cell Type</caption><html><thead></html>
<table class="enrichment_list"><caption class="table_title">Cell Type</caption><html><thead></html>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<html></thead><tbody></html><tr><td>
<html></thead><tbody></html><tr><td>
Line 59: Line 65:


<div style="float:left;width:33%;">
<div style="float:left;width:33%;">
<table class="enrichment_list"><html><thead></html>
<table class="enrichment_list"><caption class="table_title">Uber Anatomy</caption><html><thead></html>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<html></thead><tbody></html><tr><td>
<html></thead><tbody></html><tr><td>
{{#replace:{{#replace:UBERON:0004903;7.09e-18;2!UBERON:0002173;7.09e-18;2!UBERON:0002186;7.09e-18;2!UBERON:0004821;3.09e-12;3!UBERON:0007499;3.09e-12;3!UBERON:0003215;3.09e-12;3!UBERON:0010368;3.09e-12;3!UBERON:0009911;3.09e-12;3!UBERON:0002299;3.09e-12;3!UBERON:0006524;3.09e-12;3!UBERON:0008874;3.09e-12;3!UBERON:0002169;3.09e-12;3!UBERON:0004894;3.09e-12;3!UBERON:0009856;2.12e-09;4!UBERON:0004802;2.50e-07;19!UBERON:0000115;2.50e-07;19|;|</td><td>}}|!|</td></tr><tr><td>}}
{{#arraymap:UBERON:0004903;7.09e-18;2!UBERON:0002173;7.09e-18;2!UBERON:0002186;7.09e-18;2!UBERON:0004821;3.09e-12;3!UBERON:0007499;3.09e-12;3!UBERON:0003215;3.09e-12;3!UBERON:0010368;3.09e-12;3!UBERON:0009911;3.09e-12;3!UBERON:0002299;3.09e-12;3!UBERON:0006524;3.09e-12;3!UBERON:0008874;3.09e-12;3!UBERON:0002169;3.09e-12;3!UBERON:0004894;3.09e-12;3!UBERON:0009856;2.12e-09;4!UBERON:0004802;2.50e-07;19!UBERON:0000115;2.50e-07;19|!|$
|[[{{#explode:$|;|0}}|{{#show:{{#explode:$|;|0}}|?name}}]]</td><td>{{#explode:$|;|1}}</td><td>{{#explode:$|;|2}}
|</td></tr><tr><td>}}
</td></tr>
</td></tr>
<html></tbody></html></table>
<html></tbody></html></table>
Line 68: Line 76:


<div style="float:left;width:33%;">
<div style="float:left;width:33%;">
<table class="enrichment_list"><html><thead></html>
<table class="enrichment_list"><caption class="table_title">Disease</caption><html><thead></html>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<tr><th>Ontology term</th><th>p-value</th><th>n</th></tr>
<html></thead><tbody></html><tr><td>
<html></thead><tbody></html><tr><td>
{{#replace:{{#replace:DOID:3910;7.09e-18;2!DOID:3908;5.32e-16;5!DOID:3030;1.30e-09;1!DOID:5662;1.30e-09;1!DOID:1324;2.98e-09;15!DOID:3905;4.02e-09;9!DOID:0050615;1.11e-08;16|;|</td><td>}}|!|</td></tr><tr><td>}}
{{#arraymap:DOID:3910;7.09e-18;2!DOID:3908;5.32e-16;5!DOID:3030;1.30e-09;1!DOID:5662;1.30e-09;1!DOID:1324;2.98e-09;15!DOID:3905;4.02e-09;9!DOID:0050615;1.11e-08;16|!|$
|[[{{#explode:$|;|0}}|{{#show:{{#explode:$|;|0}}|?name}}]]</td><td>{{#explode:$|;|1}}</td><td>{{#explode:$|;|2}}
|</td></tr><tr><td>}}
</td></tr>
</td></tr>
<html></tbody></html></table>
<html></tbody></html></table>

Revision as of 14:14, 1 August 2012

motif without matrices Swissregulon:SRY.p1 Swissregulon:HOX(A,B,D)3.p1

doubled top motif tables CNhs10855 & CNhs11062 CNhs11245 & CNhs11183 CNhs11248 & CNhs11185 CNhs11772 & CNhs12996 CNhs11781 & CNhs12997


69981453 20241223004710

|id=chr20:44409377..44409407,- |ontology_enrichment_celltype=CL:0000322;3.09e-12;3!CL:0002601;1.30e-09;1!CL:0000319;1.30e-09;1!CL:0000082;2.50e-07;19 |ontology_enrichment_development=UBERON:0000358;4.08e-10;1!UBERON:0001041;7.06e-07;30 |ontology_enrichment_disease=DOID:3910;7.09e-18;2!DOID:3908;5.32e-16;5!DOID:3030;1.30e-09;1!DOID:5662;1.30e-09;1!DOID:1324;2.98e-09;15!DOID:3905;4.02e-09;9!DOID:0050615;1.11e-08;16 |ontology_enrichment_uberon=UBERON:0004903;7.09e-18;2!UBERON:0002173;7.09e-18;2!UBERON:0002186;7.09e-18;2!UBERON:0004821;3.09e-12;3!UBERON:0007499;3.09e-12;3!UBERON:0003215;3.09e-12;3!UBERON:0010368;3.09e-12;3!UBERON:0009911;3.09e-12;3!UBERON:0002299;3.09e-12;3!UBERON:0006524;3.09e-12;3!UBERON:0008874;3.09e-12;3!UBERON:0002169;3.09e-12;3!UBERON:0004894;3.09e-12;3!UBERON:0009856;2.12e-09;4!UBERON:0004802;2.50e-07;19!UBERON:0000115;2.50e-07;19

Cell Type
Ontology termp-valuen
pneumocyte3.09e-123
uterine smooth muscle cell1.30e-091
mucus secreting cell1.30e-091
epithelial cell of lung2.50e-0719
Uber Anatomy
Ontology termp-valuen
bronchoalveolar duct junction7.09e-182
alveolar duct7.09e-182
bronchiole7.09e-182
pulmonary alveolus epithelium3.09e-123
epithelial sac3.09e-123
alveolus3.09e-123
pulmonary lobule3.09e-123
lobule3.09e-123
alveolus of lung3.09e-123
alveolar system3.09e-123
pulmonary acinus3.09e-123
alveolar sac3.09e-123
alveolar wall3.09e-123
sac2.12e-094
respiratory tract epithelium2.50e-0719
lung epithelium2.50e-0719
Disease
Ontology termp-valuen
lung adenocarcinoma7.09e-182
non-small cell lung carcinoma5.32e-165
mucinous adenocarcinoma1.30e-091
pleomorphic carcinoma1.30e-091
lung cancer2.98e-0915
lung carcinoma4.02e-099
respiratory system cancer1.11e-0816

{{#sparql: SELECT * WHERE { ?x ?y ?z FILTER regex(?z, "GO") } LIMIT 10 |endpoint=http://go.bio2rdf.org/sparql/ |footer=NO }}




Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=User:Hisa&oldid=1874115"