FFCP PHASE1:Hg19::chr17:5322479..5322499,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset=robustDPI | |||
|EntrezGene=84268 | |EntrezGene=84268 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28641 | |HGNC=28641 | ||
|TSSclassifier=W | |||
|UniProt=E9PDG9,Q86UA6,E9PES3,F5GYE1,F5H3Q7,B3KTT3,B4DI36 | |UniProt=E9PDG9,Q86UA6,E9PES3,F5GYE1,F5H3Q7,B3KTT3,B4DI36 | ||
|association_with_transcript=-461bp_to_ENST00000381208,ENST00000381209,ENST00000405578,ENST00000536255,ENST00000539417,ENST00000540734,NM_001033002,NM_001160243,NM_001160244,NM_001160246,NM_001160266,NM_001160267,NR_027678,NR_027679,NR_027680,NR_027681,NR_027682,NR_027683,NR_027684,NR_027685,uc002gbp.1,uc002gbq.2,uc002gbr.2,uc002gbs.2,uc002gbt.2,uc002gbu.2,uc002gbv.2,uc002gbw.2,uc010vsz.1,uc010vta.1,uc010vtb.1_5end | |association_with_transcript=-461bp_to_ENST00000381208,ENST00000381209,ENST00000405578,ENST00000536255,ENST00000539417,ENST00000540734,NM_001033002,NM_001160243,NM_001160244,NM_001160246,NM_001160266,NM_001160267,NR_027678,NR_027679,NR_027680,NR_027681,NR_027682,NR_027683,NR_027684,NR_027685,uc002gbp.1,uc002gbq.2,uc002gbr.2,uc002gbs.2,uc002gbt.2,uc002gbu.2,uc002gbv.2,uc002gbw.2,uc010vsz.1,uc010vta.1,uc010vtb.1_5end | ||
Revision as of 03:30, 7 July 2013
| Short description: | p3@RPAIN |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_3_at_RPAIN_5end |
| Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
| Association with transcript: | -461bp_to_ENST00000381208, ENST00000381209, ENST00000405578, ENST00000536255, ENST00000539417, ENST00000540734, NM_001033002, NM_001160243, NM_001160244, NM_001160246, NM_001160266, NM_001160267, NR_027678, NR_027679, NR_027680, NR_027681, NR_027682, NR_027683, NR_027684, N |
| EntrezGene: | RPAIN |
| HGNC: | 28641 |
| UniProt: | E9PDG9Q86UA6E9PES3F5GYE1F5H3Q7B3KTT3B4DI36 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| B cell | 3.12e-27 | 14 |
| lymphoid lineage restricted progenitor cell | 9.96e-26 | 52 |
| lymphocyte | 4.21e-25 | 53 |
| common lymphoid progenitor | 4.21e-25 | 53 |
| lymphocyte of B lineage | 8.21e-20 | 24 |
| pro-B cell | 8.21e-20 | 24 |
| nongranular leukocyte | 5.83e-18 | 115 |
| leukocyte | 5.24e-17 | 136 |
| hematopoietic lineage restricted progenitor cell | 8.51e-17 | 120 |
| CD4-positive, alpha-beta T cell | 6.82e-16 | 6 |
| intermediate monocyte | 4.07e-12 | 9 |
| CD14-positive, CD16-positive monocyte | 4.07e-12 | 9 |
| hematopoietic stem cell | 6.87e-12 | 168 |
| hematopoietic oligopotent progenitor cell | 5.26e-11 | 161 |
| hematopoietic multipotent progenitor cell | 5.26e-11 | 161 |
| hematopoietic cell | 8.43e-11 | 177 |
| naive T cell | 6.98e-09 | 3 |
| non-classical monocyte | 1.85e-08 | 3 |
| CD14-low, CD16-positive monocyte | 1.85e-08 | 3 |
| natural killer cell | 5.03e-08 | 3 |
| pro-NK cell | 5.03e-08 | 3 |
| mature alpha-beta T cell | 5.62e-08 | 18 |
| alpha-beta T cell | 5.62e-08 | 18 |
| immature T cell | 5.62e-08 | 18 |
| mature T cell | 5.62e-08 | 18 |
| immature alpha-beta T cell | 5.62e-08 | 18 |
| Ontology term | p-value | n |
|---|---|---|
| blood | 9.47e-18 | 15 |
| haemolymphatic fluid | 9.47e-18 | 15 |
| organism substance | 9.47e-18 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
