FFCP PHASE1:Hg19::chr10:35104131..35104138,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=56288|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16051|TSSclassifier=S|UniProt=Q5VWU8,Q8TEW0,Q5VWV2|association_with_transcript=110bp_to_ENST00000346874,ENST00000350537,ENST00000374773,ENST00000374776,ENST00000374788,ENST00000374789,ENST00000374790,ENST00000374794_5end|description=CAGE_peak_4_at_PARD3_5end|id=chr10:35104131..35104138,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000306;1.21e-13;4!CL:0002222;1.21e-13;4!CL:0002224;1.21e-13;4|ontology_enrichment_celltype_v019_2=CL:0000306,1.13e-13,4;CL:0002222,1.13e-13,4;CL:0002224,1.13e-13,4|ontology_enrichment_development_v019=UBERON:0003104;3.59e-07;31|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!8.61e-10!365|ontology_enrichment_uberon_v019=UBERON:0002426;1.88e-50;1!UBERON:0003831;1.88e-50;1!UBERON:0003898;1.88e-50;1!UBERON:0004830;1.88e-50;1!UBERON:0003830;1.88e-50;1!UBERON:0005175;1.88e-50;1!UBERON:0001774;1.88e-50;1!UBERON:0001103;1.88e-50;1!UBERON:0001134;1.29e-28;16!UBERON:0002036;1.29e-28;16!UBERON:0005090;4.90e-26;2!UBERON:0001630;4.90e-26;2!UBERON:0002385;9.35e-16;31!UBERON:0001015;9.35e-16;31!UBERON:0000383;9.35e-16;31!UBERON:0010077;1.21e-13;4!UBERON:0005389;1.21e-13;4!UBERON:0000484;1.21e-13;4!UBERON:0000965;1.21e-13;4!UBERON:0001803;1.21e-13;4|ontology_enrichment_uberon_v019_2=UBERON:0002426,1.46e-50,1;UBERON:0003831,1.46e-50,1;UBERON:0003898,1.46e-50,1;UBERON:0004830,1.46e-50,1;UBERON:0003830,1.46e-50,1;UBERON:0005175,1.46e-50,1;UBERON:0001774,1.46e-50,1;UBERON:0001103,1.46e-50,1;UBERON:0010084,1.46e-50,1;UBERON:0005090,4.32e-26,2;UBERON:0001630,4.32e-26,2;UBERON:0010077,1.13e-13,4;UBERON:0005389,1.13e-13,4;UBERON:0000484,1.13e-13,4;UBERON:0002546,1.13e-13,4;UBERON:0000965,1.13e-13,4;UBERON:0001803,1.13e-13,4;UBERON:0003073,1.13e-13,4;UBERON:0005426,1.13e-13,4;UBERON:0001134,4.39e-08,62;UBERON:0002036,4.39e-08,62;UBERON:0003082,4.39e-08,62;UBERON:0002385,7.40e-08,64;UBERON:0001015,7.40e-08,64;UBERON:0000383,7.40e-08,64;UBERON:0000076,1.69e-07,8;UBERON:0002329,3.66e-07,71;UBERON:0003059,3.66e-07,71;UBERON:0007282,3.66e-07,71;UBERON:0004290,3.66e-07,71;UBERON:0009618,3.66e-07,71;UBERON:0003077,4.49e-07,72;UBERON:0007285,4.49e-07,72;UBERON:0007524,5.48e-07,73|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0.245733936501509,0,0.218441372130172,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0,0,0,0.17859945656816,0.22452937262617,0,0,0,0,0,0,0.436094052142534,0,0.25326102332916,0.132409180813219,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0.37223371266318,0,0,0,0.0920498986422993,0.161646056818812,0,0,0,0.57978255948989,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0.790204397959275,0,0,0,0,0.93733833986777,0.839910640994298,0,0,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0.153461973288062,0,0.256278298511402,0,0,0,0,0,0.164254312027618,0,0,0.120859449591622,0,0.276242966807689,0.114814448164607,0,0.131124414959424,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.773365746336976,0.154048617114644,0,0.137836572484531,0,0.290033387828457,0.340906509664404,0.356128142586949,0.330569830721956,0,0.382838137483752,0.30347334256665,0,0,0,0,0,0,0,0.286249773483982,0,0,0,0,0,0,0,0.179872457583315,0,0,0.404364963146632,0,0,0,0,0,0,0.141405431953713,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0.349934720244983,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0.213425530045242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242721043499027,0,0.284136146806413,0.23874448473769,0,0,0,0.140669416410513,0,0,0,0.19924798825107,0,0,0.20453736500431,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0.7812832832557,0.349839999984783,0,0,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0,0,0,0,0.41827123283581,0.153900517007594,0.113942055847001,0.23056390438806,0.269272933229316,0.108647371922008,0.638002319463839,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,2.40773294189637,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0.174726668242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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=56288 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16051 | |||
|TSSclassifier=S | |||
|UniProt=Q5VWU8,Q8TEW0,Q5VWV2 | |||
|association_with_transcript=110bp_to_ENST00000346874,ENST00000350537,ENST00000374773,ENST00000374776,ENST00000374788,ENST00000374789,ENST00000374790,ENST00000374794_5end | |||
|description=CAGE_peak_4_at_PARD3_5end | |||
|id=chr10:35104131..35104138,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000306;1.21e-13;4!CL:0002222;1.21e-13;4!CL:0002224;1.21e-13;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,1.13e-13,4;CL:0002222,1.13e-13,4;CL:0002224,1.13e-13,4 | |||
|ontology_enrichment_development_v019=UBERON:0003104;3.59e-07;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!8.61e-10!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002426;1.88e-50;1!UBERON:0003831;1.88e-50;1!UBERON:0003898;1.88e-50;1!UBERON:0004830;1.88e-50;1!UBERON:0003830;1.88e-50;1!UBERON:0005175;1.88e-50;1!UBERON:0001774;1.88e-50;1!UBERON:0001103;1.88e-50;1!UBERON:0001134;1.29e-28;16!UBERON:0002036;1.29e-28;16!UBERON:0005090;4.90e-26;2!UBERON:0001630;4.90e-26;2!UBERON:0002385;9.35e-16;31!UBERON:0001015;9.35e-16;31!UBERON:0000383;9.35e-16;31!UBERON:0010077;1.21e-13;4!UBERON:0005389;1.21e-13;4!UBERON:0000484;1.21e-13;4!UBERON:0000965;1.21e-13;4!UBERON:0001803;1.21e-13;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002426,1.46e-50,1;UBERON:0003831,1.46e-50,1;UBERON:0003898,1.46e-50,1;UBERON:0004830,1.46e-50,1;UBERON:0003830,1.46e-50,1;UBERON:0005175,1.46e-50,1;UBERON:0001774,1.46e-50,1;UBERON:0001103,1.46e-50,1;UBERON:0010084,1.46e-50,1;UBERON:0005090,4.32e-26,2;UBERON:0001630,4.32e-26,2;UBERON:0010077,1.13e-13,4;UBERON:0005389,1.13e-13,4;UBERON:0000484,1.13e-13,4;UBERON:0002546,1.13e-13,4;UBERON:0000965,1.13e-13,4;UBERON:0001803,1.13e-13,4;UBERON:0003073,1.13e-13,4;UBERON:0005426,1.13e-13,4;UBERON:0001134,4.39e-08,62;UBERON:0002036,4.39e-08,62;UBERON:0003082,4.39e-08,62;UBERON:0002385,7.40e-08,64;UBERON:0001015,7.40e-08,64;UBERON:0000383,7.40e-08,64;UBERON:0000076,1.69e-07,8;UBERON:0002329,3.66e-07,71;UBERON:0003059,3.66e-07,71;UBERON:0007282,3.66e-07,71;UBERON:0004290,3.66e-07,71;UBERON:0009618,3.66e-07,71;UBERON:0003077,4.49e-07,72;UBERON:0007285,4.49e-07,72;UBERON:0007524,5.48e-07,73 | |||
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|short_description=p4@PARD3 | |||
}} |
Revision as of 13:16, 10 September 2013
Short description: | p4@PARD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_PARD3_5end |
Coexpression cluster: | NA |
Association with transcript: | 110bp_to_ENST00000346874, ENST00000350537, ENST00000374773, ENST00000374776, ENST00000374788, ENST00000374789, ENST00000374790, ENST00000374794_5end |
EntrezGene: | PARD3 |
HGNC: | 16051 |
UniProt: | Q5VWU8Q8TEW0Q5VWV2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 1.13e-13 | 4 |
vertebrate lens cell | 1.13e-13 | 4 |
lens epithelial cell | 1.13e-13 | 4 |
Ontology term | p-value | n |
---|---|---|
chest muscle | 1.46e-50 | 1 |
respiratory system muscle | 1.46e-50 | 1 |
skeletal muscle of trunk | 1.46e-50 | 1 |
respiratory system skeletal muscle | 1.46e-50 | 1 |
thoracic segment muscle | 1.46e-50 | 1 |
chest organ | 1.46e-50 | 1 |
muscle of trunk | 1.46e-50 | 1 |
diaphragm | 1.46e-50 | 1 |
future diaphragm | 1.46e-50 | 1 |
muscle structure | 4.32e-26 | 2 |
muscle organ | 4.32e-26 | 2 |
cuboidal epithelium | 1.13e-13 | 4 |
transparent eye structure | 1.13e-13 | 4 |
simple cuboidal epithelium | 1.13e-13 | 4 |
cranial placode | 1.13e-13 | 4 |
lens of camera-type eye | 1.13e-13 | 4 |
epithelium of lens | 1.13e-13 | 4 |
lens placode | 1.13e-13 | 4 |
lens vesicle | 1.13e-13 | 4 |
skeletal muscle tissue | 4.39e-08 | 62 |
striated muscle tissue | 4.39e-08 | 62 |
myotome | 4.39e-08 | 62 |
muscle tissue | 7.40e-08 | 64 |
musculature | 7.40e-08 | 64 |
musculature of body | 7.40e-08 | 64 |
external ectoderm | 1.69e-07 | 8 |
somite | 3.66e-07 | 71 |
presomitic mesoderm | 3.66e-07 | 71 |
presumptive segmental plate | 3.66e-07 | 71 |
dermomyotome | 3.66e-07 | 71 |
trunk paraxial mesoderm | 3.66e-07 | 71 |
paraxial mesoderm | 4.49e-07 | 72 |
presumptive paraxial mesoderm | 4.49e-07 | 72 |
dense mesenchyme tissue | 5.48e-07 | 73 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.