FFCP PHASE1:Hg19::chr10:50818377..50818400,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6572|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10936|TSSclassifier=S|UniProt=Q16572|association_with_transcript=30bp_to_ENST00000374115,NM_003055,uc001jhw.2_5end|coexpression_cluster_id=C1313|description=CAGE_peak_1_at_SLC18A3_5end|id=chr10:50818377..50818400,+|ontology_enrichment_celltype=CL:0000349!3.44e-11!3;CL:0002577!3.44e-11!3;CL:0002536!2.15e-07!2;CL:0002537!6.89e-07!5|ontology_enrichment_celltype_v019=CL:0002577;2.70e-38;3!CL:0000349;8.47e-32;19!CL:0002537;2.05e-23;5!CL:0002097;1.81e-07;2|ontology_enrichment_celltype_v019_2=CL:0002577,3.06e-38,3;CL:0000349,7.90e-32,19;CL:0002537,1.90e-23,5;CL:0002097,1.99e-07,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:171!4.67e-15!10;DOID:169!9.31e-09!6|ontology_enrichment_disease_v019=DOID:171;8.42e-12;10!DOID:154;1.81e-07;2!DOID:4236;1.81e-07;2|ontology_enrichment_disease_v019_2=DOID:171,8.74e-12,10;DOID:154,1.87e-07,2;DOID:4236,1.87e-07,2|ontology_enrichment_uberon=UBERON:0005631!1.28e-26!14;UBERON:0000158!1.28e-26!14;UBERON:0003124!1.78e-16!7;UBERON:0000478!1.89e-14!24;UBERON:0001987!7.49e-14!4;UBERON:0004340!7.49e-14!4;UBERON:0000073!3.06e-13!94;UBERON:0001016!3.06e-13!94;UBERON:0000924!8.29e-13!173;UBERON:0006601!8.29e-13!173;UBERON:0000305!5.35e-12!7;UBERON:0002346!7.37e-11!90;UBERON:0000013!1.64e-10!5;UBERON:0002410!1.64e-10!5;UBERON:0004871!1.91e-10!8;UBERON:0004121!2.49e-10!169;UBERON:0000988!3.83e-10!3;UBERON:0005743!6.50e-10!86;UBERON:0001049!8.97e-10!57;UBERON:0005068!8.97e-10!57;UBERON:0006241!8.97e-10!57;UBERON:0007135!8.97e-10!57;UBERON:0002298!1.07e-09!8;UBERON:0001017!1.63e-09!82;UBERON:0003076!2.22e-09!15;UBERON:0003057!2.22e-09!15;UBERON:0002308!1.27e-08!9;UBERON:0000125!1.27e-08!9;UBERON:0000955!2.80e-08!69;UBERON:0006238!2.80e-08!69;UBERON:0003075!4.72e-08!86;UBERON:0007284!4.72e-08!86;UBERON:0002616!5.49e-08!59;UBERON:0002148!1.20e-07!2;UBERON:0009662!1.20e-07!2;UBERON:0000369!1.71e-07!4;UBERON:0002435!1.71e-07!4;UBERON:0000204!1.71e-07!4;UBERON:0010082!1.71e-07!4;UBERON:0001894!2.84e-07!7;UBERON:0006222!2.84e-07!7|ontology_enrichment_uberon_v019=UBERON:0001987;6.40e-29;4!UBERON:0000478;4.40e-25;24!UBERON:0005631;2.14e-20;10!UBERON:0000158;2.14e-20;10!UBERON:0000305;6.41e-17;7!UBERON:0002346;1.43e-13;4!UBERON:0000923;1.43e-13;4!UBERON:0010316;1.43e-13;4!UBERON:0005291;1.43e-13;4!UBERON:0002050;4.79e-11;5!UBERON:0005423;4.79e-11;5!UBERON:0002148;2.25e-07;2!UBERON:0006331;2.25e-07;2!UBERON:0009662;2.25e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.47e-43,14;UBERON:0000158,2.47e-43,14;UBERON:0001987,7.04e-29,4;UBERON:0004340,7.04e-29,4;UBERON:0003124,7.32e-29,7;UBERON:0000478,4.16e-25,24;UBERON:0000305,6.07e-17,7;UBERON:0004871,6.64e-15,8;UBERON:0004923,8.97e-09,66;UBERON:0002148,2.25e-07,2;UBERON:0006331,2.25e-07,2;UBERON:0009662,2.25e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.15316871458641,3.32870879020994,30.5414196262977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.0859245995237,5.64232893582013,16.5866779133585,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.689486746482929,0,2.2571249341328,0,0.361789315876224,0,0,0,0,0,0,0,0,0,0,0,2.87101043758728,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,0,0,0,0,0,0,0.468528891450678,0,0,0,0.394584402849391,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,1.80996138906171,0.66116300871345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0.683060432355218,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11881813448034,0,0,0,15.0489608310492,0,0,0,0,0,0,0.675769762612291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76736622782191,1.07824811396682,0.157265941855896,0.655257829152084,0.169732529954025,6.1646726829488,5.5771093916551,0,0,0,0,0,0,0.192687675289379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0.227662191351298,0.266107110487916,0,0,0.135939465953663,0,0,0,0.078493092850514,0.314231179832004,0,1.82631744101899,2.59113109462346,0,0.0714765441766563,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0.0771741581079447,0.437119121007915,0,0,0,0.196308467114945,0,0.8453114551668,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0.436350690340377,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310298987585686,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p1@SLC18A3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=6572 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10936 | |||
|TSSclassifier=S | |||
|UniProt=Q16572 | |||
|association_with_transcript=30bp_to_ENST00000374115,NM_003055,uc001jhw.2_5end | |||
|coexpression_cluster_id=C1313 | |||
|description=CAGE_peak_1_at_SLC18A3_5end | |||
|id=chr10:50818377..50818400,+ | |||
|ontology_enrichment_celltype=CL:0000349!3.44e-11!3;CL:0002577!3.44e-11!3;CL:0002536!2.15e-07!2;CL:0002537!6.89e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002577;2.70e-38;3!CL:0000349;8.47e-32;19!CL:0002537;2.05e-23;5!CL:0002097;1.81e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,3.06e-38,3;CL:0000349,7.90e-32,19;CL:0002537,1.90e-23,5;CL:0002097,1.99e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!4.67e-15!10;DOID:169!9.31e-09!6 | |||
|ontology_enrichment_disease_v019=DOID:171;8.42e-12;10!DOID:154;1.81e-07;2!DOID:4236;1.81e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:171,8.74e-12,10;DOID:154,1.87e-07,2;DOID:4236,1.87e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.28e-26!14;UBERON:0000158!1.28e-26!14;UBERON:0003124!1.78e-16!7;UBERON:0000478!1.89e-14!24;UBERON:0001987!7.49e-14!4;UBERON:0004340!7.49e-14!4;UBERON:0000073!3.06e-13!94;UBERON:0001016!3.06e-13!94;UBERON:0000924!8.29e-13!173;UBERON:0006601!8.29e-13!173;UBERON:0000305!5.35e-12!7;UBERON:0002346!7.37e-11!90;UBERON:0000013!1.64e-10!5;UBERON:0002410!1.64e-10!5;UBERON:0004871!1.91e-10!8;UBERON:0004121!2.49e-10!169;UBERON:0000988!3.83e-10!3;UBERON:0005743!6.50e-10!86;UBERON:0001049!8.97e-10!57;UBERON:0005068!8.97e-10!57;UBERON:0006241!8.97e-10!57;UBERON:0007135!8.97e-10!57;UBERON:0002298!1.07e-09!8;UBERON:0001017!1.63e-09!82;UBERON:0003076!2.22e-09!15;UBERON:0003057!2.22e-09!15;UBERON:0002308!1.27e-08!9;UBERON:0000125!1.27e-08!9;UBERON:0000955!2.80e-08!69;UBERON:0006238!2.80e-08!69;UBERON:0003075!4.72e-08!86;UBERON:0007284!4.72e-08!86;UBERON:0002616!5.49e-08!59;UBERON:0002148!1.20e-07!2;UBERON:0009662!1.20e-07!2;UBERON:0000369!1.71e-07!4;UBERON:0002435!1.71e-07!4;UBERON:0000204!1.71e-07!4;UBERON:0010082!1.71e-07!4;UBERON:0001894!2.84e-07!7;UBERON:0006222!2.84e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001987;6.40e-29;4!UBERON:0000478;4.40e-25;24!UBERON:0005631;2.14e-20;10!UBERON:0000158;2.14e-20;10!UBERON:0000305;6.41e-17;7!UBERON:0002346;1.43e-13;4!UBERON:0000923;1.43e-13;4!UBERON:0010316;1.43e-13;4!UBERON:0005291;1.43e-13;4!UBERON:0002050;4.79e-11;5!UBERON:0005423;4.79e-11;5!UBERON:0002148;2.25e-07;2!UBERON:0006331;2.25e-07;2!UBERON:0009662;2.25e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.47e-43,14;UBERON:0000158,2.47e-43,14;UBERON:0001987,7.04e-29,4;UBERON:0004340,7.04e-29,4;UBERON:0003124,7.32e-29,7;UBERON:0000478,4.16e-25,24;UBERON:0000305,6.07e-17,7;UBERON:0004871,6.64e-15,8;UBERON:0004923,8.97e-09,66;UBERON:0002148,2.25e-07,2;UBERON:0006331,2.25e-07,2;UBERON:0009662,2.25e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.15316871458641,3.32870879020994,30.5414196262977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.0859245995237,5.64232893582013,16.5866779133585,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.689486746482929,0,2.2571249341328,0,0.361789315876224,0,0,0,0,0,0,0,0,0,0,0,2.87101043758728,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,0,0,0,0,0,0,0.468528891450678,0,0,0,0.394584402849391,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,1.80996138906171,0.66116300871345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0.683060432355218,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.11881813448034,0,0,0,15.0489608310492,0,0,0,0,0,0,0.675769762612291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76736622782191,1.07824811396682,0.157265941855896,0.655257829152084,0.169732529954025,6.1646726829488,5.5771093916551,0,0,0,0,0,0,0.192687675289379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336283722218824,0,0.227662191351298,0.266107110487916,0,0,0.135939465953663,0,0,0,0.078493092850514,0.314231179832004,0,1.82631744101899,2.59113109462346,0,0.0714765441766563,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0.0771741581079447,0.437119121007915,0,0,0,0.196308467114945,0,0.8453114551668,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0.436350690340377,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310298987585686,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@SLC18A3 | |||
}} |
Revision as of 13:35, 10 September 2013
Short description: | p1@SLC18A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SLC18A3_5end |
Coexpression cluster: | C1313_Placental_mesothelioma_amniotic_neuroectodermal_renal_chorionic_carcinosarcoma |
Association with transcript: | 30bp_to_ENST00000374115, NM_003055, uc001jhw.2_5end |
EntrezGene: | SLC18A3 |
HGNC: | 10936 |
UniProt: | Q16572 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 3.06e-38 | 3 |
extraembryonic cell | 7.90e-32 | 19 |
amnion mesenchymal stem cell | 1.90e-23 | 5 |
cortical cell of adrenal gland | 1.99e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.47e-43 | 14 |
membranous layer | 2.47e-43 | 14 |
placenta | 7.04e-29 | 4 |
allantois | 7.04e-29 | 4 |
chorion | 7.32e-29 | 7 |
extraembryonic structure | 4.16e-25 | 24 |
amnion | 6.07e-17 | 7 |
somatic layer of lateral plate mesoderm | 6.64e-15 | 8 |
organ component layer | 8.97e-09 | 66 |
locus ceruleus | 2.25e-07 | 2 |
brainstem nucleus | 2.25e-07 | 2 |
hindbrain nucleus | 2.25e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 8.74e-12 | 10 |
mixed cell type cancer | 1.87e-07 | 2 |
carcinosarcoma | 1.87e-07 | 2 |
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