FFCP PHASE1:Hg19::chr11:8857197..8857204,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6764|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11350|TSSclassifier=S|UniProt=|association_with_transcript=9bp_to_ENST00000529940_5end|coexpression_cluster_id=C1007|description=CAGE_peak_56_at_ST5_5end|id=chr11:8857197..8857204,-|ontology_enrichment_celltype=CL:0002541!2.95e-43!3;CL:0000349!9.33e-43!3;CL:0002577!9.33e-43!3;CL:0002536!1.08e-29!2;CL:0002537!1.98e-26!5|ontology_enrichment_celltype_v019=CL:0000349;3.83e-42;19!CL:0002536;9.18e-26;2!CL:0002577;7.35e-18;3!CL:0002541;9.46e-18;3!CL:0002537;2.80e-11;5|ontology_enrichment_celltype_v019_2=CL:0000349,3.83e-42,19;CL:0002536,9.18e-26,2;CL:0002577,8.00e-18,3;CL:0002541,9.46e-18,3;CL:0002537,2.66e-11,5|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005631!6.02e-144!14;UBERON:0000158!6.02e-144!14;UBERON:0003124!7.73e-98!7;UBERON:0000478!1.20e-83!24;UBERON:0001987!2.52e-56!4;UBERON:0004340!2.52e-56!4;UBERON:0000305!4.70e-51!7;UBERON:0004871!1.05e-44!8;UBERON:0000476!2.95e-43!3;UBERON:0000920!2.95e-43!3;UBERON:0004923!1.13e-34!57;UBERON:0000995!4.74e-11!21;UBERON:0005795!1.47e-10!22;UBERON:0003975!1.47e-10!22;UBERON:0004175!2.53e-09!25;UBERON:0000064!4.69e-08!219|ontology_enrichment_uberon_v019=UBERON:0005631;6.08e-45;10!UBERON:0000158;6.08e-45;10!UBERON:0000478;1.33e-33;24!UBERON:0000305;3.92e-29;7!UBERON:0003124;9.46e-18;3!UBERON:0000920;9.46e-18;3!UBERON:0001987;9.39e-14;4|ontology_enrichment_uberon_v019_2=UBERON:0005631,9.13e-57,14;UBERON:0000158,9.13e-57,14;UBERON:0000478,1.33e-33,24;UBERON:0000305,3.65e-29,7;UBERON:0003124,3.65e-29,7;UBERON:0004871,1.11e-25,8;UBERON:0000920,9.46e-18,3;UBERON:0001987,1.00e-13,4;UBERON:0004340,1.00e-13,4;UBERON:0004923,7.62e-13,66|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.52908960491121,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,3.32870879020994,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,3.8605408508243,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,2.65633020865401,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532214220975833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p56@ST5}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=6764 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11350 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=9bp_to_ENST00000529940_5end | |||
|coexpression_cluster_id=C1007 | |||
|description=CAGE_peak_56_at_ST5_5end | |||
|id=chr11:8857197..8857204,- | |||
|ontology_enrichment_celltype=CL:0002541!2.95e-43!3;CL:0000349!9.33e-43!3;CL:0002577!9.33e-43!3;CL:0002536!1.08e-29!2;CL:0002537!1.98e-26!5 | |||
|ontology_enrichment_celltype_v019=CL:0000349;3.83e-42;19!CL:0002536;9.18e-26;2!CL:0002577;7.35e-18;3!CL:0002541;9.46e-18;3!CL:0002537;2.80e-11;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,3.83e-42,19;CL:0002536,9.18e-26,2;CL:0002577,8.00e-18,3;CL:0002541,9.46e-18,3;CL:0002537,2.66e-11,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!6.02e-144!14;UBERON:0000158!6.02e-144!14;UBERON:0003124!7.73e-98!7;UBERON:0000478!1.20e-83!24;UBERON:0001987!2.52e-56!4;UBERON:0004340!2.52e-56!4;UBERON:0000305!4.70e-51!7;UBERON:0004871!1.05e-44!8;UBERON:0000476!2.95e-43!3;UBERON:0000920!2.95e-43!3;UBERON:0004923!1.13e-34!57;UBERON:0000995!4.74e-11!21;UBERON:0005795!1.47e-10!22;UBERON:0003975!1.47e-10!22;UBERON:0004175!2.53e-09!25;UBERON:0000064!4.69e-08!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;6.08e-45;10!UBERON:0000158;6.08e-45;10!UBERON:0000478;1.33e-33;24!UBERON:0000305;3.92e-29;7!UBERON:0003124;9.46e-18;3!UBERON:0000920;9.46e-18;3!UBERON:0001987;9.39e-14;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,9.13e-57,14;UBERON:0000158,9.13e-57,14;UBERON:0000478,1.33e-33,24;UBERON:0000305,3.65e-29,7;UBERON:0003124,3.65e-29,7;UBERON:0004871,1.11e-25,8;UBERON:0000920,9.46e-18,3;UBERON:0001987,1.00e-13,4;UBERON:0004340,1.00e-13,4;UBERON:0004923,7.62e-13,66 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.52908960491121,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,3.32870879020994,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,3.8605408508243,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,2.65633020865401,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532214220975833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p56@ST5 | |||
}} |
Revision as of 20:06, 10 September 2013
Short description: | p56@ST5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_56_at_ST5_5end |
Coexpression cluster: | C1007_amniotic_chorionic_Placental_Amniotic_placenta_rectal_umbilical |
Association with transcript: | 9bp_to_ENST00000529940_5end |
EntrezGene: | ST5 |
HGNC: | 11350 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 3.83e-42 | 19 |
amniotic epithelial cell | 9.18e-26 | 2 |
placental epithelial cell | 8.00e-18 | 3 |
chorionic membrane mesenchymal stem cell | 9.46e-18 | 3 |
amnion mesenchymal stem cell | 2.66e-11 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 9.13e-57 | 14 |
membranous layer | 9.13e-57 | 14 |
extraembryonic structure | 1.33e-33 | 24 |
amnion | 3.65e-29 | 7 |
chorion | 3.65e-29 | 7 |
somatic layer of lateral plate mesoderm | 1.11e-25 | 8 |
egg chorion | 9.46e-18 | 3 |
placenta | 1.00e-13 | 4 |
allantois | 1.00e-13 | 4 |
organ component layer | 7.62e-13 | 66 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.