FFCP PHASE1:Hg19::chr12:25054930..25054940,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=586|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=976|TSSclassifier=W|UniProt=Q68DQ7|association_with_transcript=289bp_to_ENST00000538118_5end|coexpression_cluster_id=C128|description=CAGE_peak_34_at_BCAT1_5end|id=chr12:25054930..25054940,-|ontology_enrichment_celltype=CL:0002139!3.25e-15!24;CL:0000071!5.76e-11!18;CL:0002546!5.76e-11!18;CL:0002543!6.93e-10!6;CL:0000115!2.97e-09!35;CL:0002057!5.91e-08!42;CL:0002618!6.06e-08!3;CL:0000860!3.49e-07!45|ontology_enrichment_celltype_v019=CL:0000039;9.57e-51;7!CL:0000586;9.57e-51;7!CL:0000047;2.90e-12;2!CL:0002545;2.90e-12;2!CL:0002618;1.30e-08;3|ontology_enrichment_celltype_v019_2=CL:0000039,7.90e-51,7;CL:0000586,7.90e-51,7;CL:0002545,3.62e-12,2;CL:0002618,1.40e-08,3|ontology_enrichment_development_v019=UBERON:0009117;9.99e-36;10!UBERON:0005564;9.99e-36;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3095;1.54e-16;22!DOID:2994;1.54e-16;22|ontology_enrichment_disease_v019_2=DOID:3095,1.45e-16,22;DOID:2994,1.45e-16,22|ontology_enrichment_uberon=UBERON:0000073!4.81e-17!94;UBERON:0001016!4.81e-17!94;UBERON:0005743!6.29e-15!86;UBERON:0001017!1.43e-12!82;UBERON:0001986!5.76e-11!18;UBERON:0004638!5.76e-11!18;UBERON:0004852!5.76e-11!18;UBERON:0001049!3.97e-10!57;UBERON:0005068!3.97e-10!57;UBERON:0006241!3.97e-10!57;UBERON:0007135!3.97e-10!57;UBERON:0003075!9.89e-09!86;UBERON:0007284!9.89e-09!86;UBERON:0002020!1.17e-08!34;UBERON:0003528!1.17e-08!34;UBERON:0002616!1.42e-08!59;UBERON:0000487!1.55e-08!22;UBERON:0000955!2.55e-08!69;UBERON:0006238!2.55e-08!69;UBERON:0004121!4.37e-08!169;UBERON:0002346!4.52e-08!90;UBERON:0001869!5.21e-08!32;UBERON:0000924!1.08e-07!173;UBERON:0006601!1.08e-07!173;UBERON:0001893!2.23e-07!34;UBERON:0006914!3.11e-07!25;UBERON:0000468!3.44e-07!659;UBERON:0000988!9.48e-07!3|ontology_enrichment_uberon_v019=UBERON:0000473;1.72e-44;8!UBERON:0003135;1.55e-32;11!UBERON:0000991;2.64e-17;21!UBERON:0003101;1.54e-16;22!UBERON:0000079;1.54e-16;22!UBERON:0005800;2.90e-12;2!UBERON:0001515;2.90e-12;2!UBERON:0002323;6.85e-08;45|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.45e-44,8;UBERON:0003135,1.37e-32,11;UBERON:0000991,2.48e-17,21;UBERON:0009196,2.48e-17,21;UBERON:0009117,2.48e-17,21;UBERON:0005564,2.48e-17,21;UBERON:0004176,1.45e-16,22;UBERON:0003101,1.45e-16,22;UBERON:0000079,1.45e-16,22;UBERON:0005800,3.62e-12,2;UBERON:0001515,3.62e-12,2;UBERON:0002323,3.98e-08,46;UBERON:0003133,8.42e-08,48;UBERON:0004458,1.20e-07,49;UBERON:0003886,5.73e-07,54|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0.125542639594803,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0.822335776043652,0.309706370895104,0,0,0.236482229888585,0,0.645484683583826,0,0.188242339542605,0.545812300115692,0.224723484445085,0.306083892370903,0.320929027076094,0,0,0.199463657621632,0,0,0.56738522469114,0.622822248995575,0,0.521482918420201,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0.56530794192401,0,0,0,0,0,0.33472061276467,0.402829317109147,0.760272105718513,0,1.10298924103761,0,0.625098097988558,1.12264686313085,0.563057402416611,0,0.949265659568129,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0.23486899728753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0.121973706129595,0,0,0.414644220061482,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.288732895522148,0.462985512576611,0.190254152234598,0,0,0.246217006087397,0,0.445893486866185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0.239624855491583,1.14861935834114,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0.328014645699706,0,0,0,0,0,0,0,0.096670718292122,0,0.307007349452259,0,0,0,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.47748896947538,0.296964680832639,0.307160702099232,0,0,0,0.329607748453519,0,0,0,0,2.45444838005172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0.110579259931225,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0.137539436597234,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=586 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=976 | |||
|TSSclassifier=W | |||
|UniProt=Q68DQ7 | |||
|association_with_transcript=289bp_to_ENST00000538118_5end | |||
|coexpression_cluster_id=C128 | |||
|description=CAGE_peak_34_at_BCAT1_5end | |||
|id=chr12:25054930..25054940,- | |||
|ontology_enrichment_celltype=CL:0002139!3.25e-15!24;CL:0000071!5.76e-11!18;CL:0002546!5.76e-11!18;CL:0002543!6.93e-10!6;CL:0000115!2.97e-09!35;CL:0002057!5.91e-08!42;CL:0002618!6.06e-08!3;CL:0000860!3.49e-07!45 | |||
|ontology_enrichment_celltype_v019=CL:0000039;9.57e-51;7!CL:0000586;9.57e-51;7!CL:0000047;2.90e-12;2!CL:0002545;2.90e-12;2!CL:0002618;1.30e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,7.90e-51,7;CL:0000586,7.90e-51,7;CL:0002545,3.62e-12,2;CL:0002618,1.40e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;9.99e-36;10!UBERON:0005564;9.99e-36;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;1.54e-16;22!DOID:2994;1.54e-16;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.45e-16,22;DOID:2994,1.45e-16,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!4.81e-17!94;UBERON:0001016!4.81e-17!94;UBERON:0005743!6.29e-15!86;UBERON:0001017!1.43e-12!82;UBERON:0001986!5.76e-11!18;UBERON:0004638!5.76e-11!18;UBERON:0004852!5.76e-11!18;UBERON:0001049!3.97e-10!57;UBERON:0005068!3.97e-10!57;UBERON:0006241!3.97e-10!57;UBERON:0007135!3.97e-10!57;UBERON:0003075!9.89e-09!86;UBERON:0007284!9.89e-09!86;UBERON:0002020!1.17e-08!34;UBERON:0003528!1.17e-08!34;UBERON:0002616!1.42e-08!59;UBERON:0000487!1.55e-08!22;UBERON:0000955!2.55e-08!69;UBERON:0006238!2.55e-08!69;UBERON:0004121!4.37e-08!169;UBERON:0002346!4.52e-08!90;UBERON:0001869!5.21e-08!32;UBERON:0000924!1.08e-07!173;UBERON:0006601!1.08e-07!173;UBERON:0001893!2.23e-07!34;UBERON:0006914!3.11e-07!25;UBERON:0000468!3.44e-07!659;UBERON:0000988!9.48e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.72e-44;8!UBERON:0003135;1.55e-32;11!UBERON:0000991;2.64e-17;21!UBERON:0003101;1.54e-16;22!UBERON:0000079;1.54e-16;22!UBERON:0005800;2.90e-12;2!UBERON:0001515;2.90e-12;2!UBERON:0002323;6.85e-08;45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.45e-44,8;UBERON:0003135,1.37e-32,11;UBERON:0000991,2.48e-17,21;UBERON:0009196,2.48e-17,21;UBERON:0009117,2.48e-17,21;UBERON:0005564,2.48e-17,21;UBERON:0004176,1.45e-16,22;UBERON:0003101,1.45e-16,22;UBERON:0000079,1.45e-16,22;UBERON:0005800,3.62e-12,2;UBERON:0001515,3.62e-12,2;UBERON:0002323,3.98e-08,46;UBERON:0003133,8.42e-08,48;UBERON:0004458,1.20e-07,49;UBERON:0003886,5.73e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0.125542639594803,0,0,0,0.393364276848904,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0.822335776043652,0.309706370895104,0,0,0.236482229888585,0,0.645484683583826,0,0.188242339542605,0.545812300115692,0.224723484445085,0.306083892370903,0.320929027076094,0,0,0.199463657621632,0,0,0.56738522469114,0.622822248995575,0,0.521482918420201,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0.56530794192401,0,0,0,0,0,0.33472061276467,0.402829317109147,0.760272105718513,0,1.10298924103761,0,0.625098097988558,1.12264686313085,0.563057402416611,0,0.949265659568129,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0.23486899728753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0.121973706129595,0,0,0.414644220061482,0.504641701751257,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.288732895522148,0.462985512576611,0.190254152234598,0,0,0.246217006087397,0,0.445893486866185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0.239624855491583,1.14861935834114,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0.328014645699706,0,0,0,0,0,0,0,0.096670718292122,0,0.307007349452259,0,0,0,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.47748896947538,0.296964680832639,0.307160702099232,0,0,0,0.329607748453519,0,0,0,0,2.45444838005172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0.110579259931225,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0.137539436597234,0,0,0,0.121499113316049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0.250381861413,0,0.110929051536852,0.248385611765534,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0.323474434190045,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,0.252071696221718,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0.342976018874837,0.339848664884159,0.328863867814245,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0.109265571963696,0,3.05966489225945,7.48208734743569,2.94063678511504,1.25353769646188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p34@BCAT1 | |||
}} |
Revision as of 22:14, 10 September 2013
Short description: | p34@BCAT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_34_at_BCAT1_5end |
Coexpression cluster: | C128_testicular_choriocarcinoma_H9_teratocarcinoma_pancreatic_iPS_HES3GFP |
Association with transcript: | 289bp_to_ENST00000538118_5end |
EntrezGene: | BCAT1 |
HGNC: | 976 |
UniProt: | Q68DQ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 7.90e-51 | 7 |
germ cell | 7.90e-51 | 7 |
thoracic aorta endothelial cell | 3.62e-12 | 2 |
endothelial cell of umbilical vein | 1.40e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
testis | 1.45e-44 | 8 |
male reproductive organ | 1.37e-32 | 11 |
gonad | 2.48e-17 | 21 |
indifferent external genitalia | 2.48e-17 | 21 |
indifferent gonad | 2.48e-17 | 21 |
gonad primordium | 2.48e-17 | 21 |
external genitalia | 1.45e-16 | 22 |
male organism | 1.45e-16 | 22 |
male reproductive system | 1.45e-16 | 22 |
segment of aorta | 3.62e-12 | 2 |
thoracic aorta | 3.62e-12 | 2 |
body cavity | 3.98e-08 | 46 |
reproductive organ | 8.42e-08 | 48 |
body cavity or lining | 1.20e-07 | 49 |
body cavity precursor | 5.73e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.45e-16 | 22 |
germ cell cancer | 1.45e-16 | 22 |
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