FFCP PHASE1:Hg19::chr13:114567443..114567462,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2621|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4168|TSSclassifier=W|UniProt=Q14393|association_with_transcript=-397bp_to_ENST00000357389,NM_000820,uc001vud.2_5end|coexpression_cluster_id=C240|description=CAGE_peak_11_at_GAS6_5end|id=chr13:114567443..114567462,-|ontology_enrichment_celltype=CL:0000055!5.42e-16!180;CL:0000057!6.29e-12!75;CL:0002620!2.39e-10!23;CL:0000136!1.01e-08!15|ontology_enrichment_celltype_v019=CL:0000136;4.10e-36;13!CL:0002615;1.34e-23;3!CL:0002580;1.14e-22;3!CL:0002617;1.60e-16;2!CL:0002334;3.50e-15;12!CL:0002521;5.98e-11;3!CL:0002579;9.35e-11;3!CL:0002616;1.53e-08;1!CL:0000062;5.66e-08;9|ontology_enrichment_celltype_v019_2=CL:0000136,2.55e-31,15;CL:0002615,9.89e-24,3;CL:0002580,8.83e-23,3;CL:0002617,1.37e-16,2;CL:0002334,2.63e-15,12;CL:0002521,6.29e-11,3;CL:0002579,6.95e-11,3;CL:0002616,1.13e-08,1|ontology_enrichment_development_v019=UBERON:0000358;7.74e-09;1!UBERON:0010115;7.74e-09;1!UBERON:0010227;1.53e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:4235;1.53e-08;1|ontology_enrichment_disease_v019_2=DOID:4235,2.22e-08,1|ontology_enrichment_uberon=UBERON:0003688!3.04e-11!6;UBERON:0002358!3.04e-11!6;UBERON:0003684!3.04e-11!6;UBERON:0001178!3.04e-11!6;UBERON:0004457!2.23e-08!12;UBERON:0000042!2.23e-08!12;UBERON:0002199!6.47e-07!45;UBERON:0002416!6.47e-07!45|ontology_enrichment_uberon_v019=UBERON:0003688;3.32e-31;6!UBERON:0002358;3.32e-31;6!UBERON:0003684;3.32e-31;6!UBERON:0001178;3.32e-31;6!UBERON:0004457;8.77e-21;9!UBERON:0000042;8.77e-21;9!UBERON:0000310;1.18e-18;10!UBERON:0001443;6.00e-17;11!UBERON:0002081;7.04e-16;2!UBERON:0002190;5.98e-11;3!UBERON:0004151;6.77e-11;3!UBERON:0002134;4.70e-09;1!UBERON:0005208;4.70e-09;1!UBERON:0004145;4.70e-09;1!UBERON:0005946;4.70e-09;1!UBERON:0005965;4.70e-09;1!UBERON:0002078;4.70e-09;1!UBERON:0002363;7.74e-09;1!UBERON:0002079;1.53e-08;1!UBERON:0002072;6.65e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.78e-31,6;UBERON:0002358,1.78e-31,6;UBERON:0003684,1.78e-31,6;UBERON:0001178,1.78e-31,6;UBERON:0000310,9.64e-19,10;UBERON:0001443,5.00e-17,11;UBERON:0002081,6.78e-16,2;UBERON:0010227,6.78e-16,2;UBERON:0004457,1.09e-15,12;UBERON:0000042,1.09e-15,12;UBERON:0002190,6.29e-11,3;UBERON:0004151,6.61e-11,3;UBERON:0002134,4.52e-09,1;UBERON:0005208,4.52e-09,1;UBERON:0005946,4.52e-09,1;UBERON:0005965,4.52e-09,1;UBERON:0002078,4.52e-09,1;UBERON:0002363,9.74e-09,1;UBERON:0007645,9.74e-09,1;UBERON:0007647,9.74e-09,1;UBERON:0010115,9.74e-09,1;UBERON:0002079,1.53e-08,1;UBERON:0002072,6.85e-07,5|phase1_expression=3.81524596468169,4.92431204949261,3.94672331468719,4.00293193412522,2.68176656656373,1.74467704820074,2.53299878168311,0,2.35067065379855,0,0,0,0,0,0,0,0,0.730310090387373,0,0.246242116153576,0,0.626909442956176,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.50936537445123,0.579386075843295,0.795285947051099,0.486634870302636,0,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0.122834317311768,0,0,2.71993622206413,0,0,0,0,0,0.877955241761676,0.30648779579902,3.15499923703853,0,0,1.49490172172997,0,0.900273288253207,0.309157587715317,0.515281080091258,0.558350568994769,0.168776332241266,0.876933046450788,0.252433774244115,1.10459878370759,0,0.710019185033229,0.201504196455281,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517086863031111,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0,0.410952645100767,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0,0,0.117141414992713,1.20378439891088,11.3703752027992,0,1.32845119707087,0,0,0,0,0,0,0,0,0,0,1.48864684691266,3.52962538562544,1.68396056659844,1.79394808957981,2.55853624533352,0.482561763430822,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0,0,0.137836572484531,0,0.145016693914229,0.0852266274161009,0,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0.179872457583315,0,0,0,0,0,0.48763373908959,0.243713489631284,0,0,0,0,0,0,0.438450885253763,0,0,0.608731130888112,0.6196469961995,0,0,0.491245205065606,0.35667105148125,0,0,0.987884678879706,0,0,0,0,1.08890984861323,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0.986434056369336,0,0,0,0.185536196323703,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0.11394205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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2621 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4168 | |||
|TSSclassifier=W | |||
|UniProt=Q14393 | |||
|association_with_transcript=-397bp_to_ENST00000357389,NM_000820,uc001vud.2_5end | |||
|coexpression_cluster_id=C240 | |||
|description=CAGE_peak_11_at_GAS6_5end | |||
|id=chr13:114567443..114567462,- | |||
|ontology_enrichment_celltype=CL:0000055!5.42e-16!180;CL:0000057!6.29e-12!75;CL:0002620!2.39e-10!23;CL:0000136!1.01e-08!15 | |||
|ontology_enrichment_celltype_v019=CL:0000136;4.10e-36;13!CL:0002615;1.34e-23;3!CL:0002580;1.14e-22;3!CL:0002617;1.60e-16;2!CL:0002334;3.50e-15;12!CL:0002521;5.98e-11;3!CL:0002579;9.35e-11;3!CL:0002616;1.53e-08;1!CL:0000062;5.66e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,2.55e-31,15;CL:0002615,9.89e-24,3;CL:0002580,8.83e-23,3;CL:0002617,1.37e-16,2;CL:0002334,2.63e-15,12;CL:0002521,6.29e-11,3;CL:0002579,6.95e-11,3;CL:0002616,1.13e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0000358;7.74e-09;1!UBERON:0010115;7.74e-09;1!UBERON:0010227;1.53e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4235;1.53e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4235,2.22e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0003688!3.04e-11!6;UBERON:0002358!3.04e-11!6;UBERON:0003684!3.04e-11!6;UBERON:0001178!3.04e-11!6;UBERON:0004457!2.23e-08!12;UBERON:0000042!2.23e-08!12;UBERON:0002199!6.47e-07!45;UBERON:0002416!6.47e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;3.32e-31;6!UBERON:0002358;3.32e-31;6!UBERON:0003684;3.32e-31;6!UBERON:0001178;3.32e-31;6!UBERON:0004457;8.77e-21;9!UBERON:0000042;8.77e-21;9!UBERON:0000310;1.18e-18;10!UBERON:0001443;6.00e-17;11!UBERON:0002081;7.04e-16;2!UBERON:0002190;5.98e-11;3!UBERON:0004151;6.77e-11;3!UBERON:0002134;4.70e-09;1!UBERON:0005208;4.70e-09;1!UBERON:0004145;4.70e-09;1!UBERON:0005946;4.70e-09;1!UBERON:0005965;4.70e-09;1!UBERON:0002078;4.70e-09;1!UBERON:0002363;7.74e-09;1!UBERON:0002079;1.53e-08;1!UBERON:0002072;6.65e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.78e-31,6;UBERON:0002358,1.78e-31,6;UBERON:0003684,1.78e-31,6;UBERON:0001178,1.78e-31,6;UBERON:0000310,9.64e-19,10;UBERON:0001443,5.00e-17,11;UBERON:0002081,6.78e-16,2;UBERON:0010227,6.78e-16,2;UBERON:0004457,1.09e-15,12;UBERON:0000042,1.09e-15,12;UBERON:0002190,6.29e-11,3;UBERON:0004151,6.61e-11,3;UBERON:0002134,4.52e-09,1;UBERON:0005208,4.52e-09,1;UBERON:0005946,4.52e-09,1;UBERON:0005965,4.52e-09,1;UBERON:0002078,4.52e-09,1;UBERON:0002363,9.74e-09,1;UBERON:0007645,9.74e-09,1;UBERON:0007647,9.74e-09,1;UBERON:0010115,9.74e-09,1;UBERON:0002079,1.53e-08,1;UBERON:0002072,6.85e-07,5 | |||
|phase1_expression=3.81524596468169,4.92431204949261,3.94672331468719,4.00293193412522,2.68176656656373,1.74467704820074,2.53299878168311,0,2.35067065379855,0,0,0,0,0,0,0,0,0.730310090387373,0,0.246242116153576,0,0.626909442956176,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.50936537445123,0.579386075843295,0.795285947051099,0.486634870302636,0,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0.122834317311768,0,0,2.71993622206413,0,0,0,0,0,0.877955241761676,0.30648779579902,3.15499923703853,0,0,1.49490172172997,0,0.900273288253207,0.309157587715317,0.515281080091258,0.558350568994769,0.168776332241266,0.876933046450788,0.252433774244115,1.10459878370759,0,0.710019185033229,0.201504196455281,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517086863031111,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0.871533458600294,0,0,0,0,0,0,0,0,0.410952645100767,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0,0,0.117141414992713,1.20378439891088,11.3703752027992,0,1.32845119707087,0,0,0,0,0,0,0,0,0,0,1.48864684691266,3.52962538562544,1.68396056659844,1.79394808957981,2.55853624533352,0.482561763430822,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0,0,0.137836572484531,0,0.145016693914229,0.0852266274161009,0,0,0,0,0,0,0.62962469366128,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0.179872457583315,0,0,0,0,0,0.48763373908959,0.243713489631284,0,0,0,0,0,0,0.438450885253763,0,0,0.608731130888112,0.6196469961995,0,0,0.491245205065606,0.35667105148125,0,0,0.987884678879706,0,0,0,0,1.08890984861323,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0.986434056369336,0,0,0,0.185536196323703,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27471686662557,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0.274083849293502,0,0.0633107959558787,0,0,0.640358984218058,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,3.58936512288407,0,0,0.89268582976749,0.134366944973453,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316801009558219,0,0.383830394638891,1.42939065274673,0.662091970365432,0,0.542999601753713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0.15543720058278,0,0,0,0,0,0.265841714557995,0,0,0.380805212168795,0.406870733204662,0.181848659202559,0,0,0.796191777397232,0,0,0.336749488765919,0,0,0,0,0,0.694567422971502,0.244736704506468,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0.150420656698515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.857440047187092,0,0,0,0,0.313972371402056,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0.647428837187895,0.513314034281235,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,1.0195626881269,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0.112131862580613,0.445530107947154,0,0,0,0,0.573777643141411,0,0,0,0,0,2.34640942403454,0.122241444182866,0,0.665756774185513,0,0 | |||
|short_description=p11@GAS6 | |||
}} |
Revision as of 01:38, 11 September 2013
Short description: | p11@GAS6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_GAS6_5end |
Coexpression cluster: | C240_Adipocyte_Preadipocyte_Osteoblast_Chondrocyte_tenocyte_Synoviocyte_mesenchymal |
Association with transcript: | -397bp_to_ENST00000357389, NM_000820, uc001vud.2_5end |
EntrezGene: | GAS6 |
HGNC: | 4168 |
UniProt: | Q14393 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 2.55e-31 | 15 |
adipocyte of omentum tissue | 9.89e-24 | 3 |
preadipocyte of the breast | 8.83e-23 | 3 |
adipocyte of breast | 1.37e-16 | 2 |
preadipocyte | 2.63e-15 | 12 |
subcutaneous fat cell | 6.29e-11 | 3 |
omentum preadipocyte | 6.95e-11 | 3 |
perirenal adipocyte cell | 1.13e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.78e-31 | 6 |
peritoneum | 1.78e-31 | 6 |
abdominal cavity | 1.78e-31 | 6 |
visceral peritoneum | 1.78e-31 | 6 |
breast | 9.64e-19 | 10 |
chest | 5.00e-17 | 11 |
cardiac atrium | 6.78e-16 | 2 |
future cardiac atrium | 6.78e-16 | 2 |
cavity lining | 1.09e-15 | 12 |
serous membrane | 1.09e-15 | 12 |
subcutaneous adipose tissue | 6.29e-11 | 3 |
cardiac chamber | 6.61e-11 | 3 |
tricuspid valve | 4.52e-09 | 1 |
right atrium valve | 4.52e-09 | 1 |
outflow tract of atrium | 4.52e-09 | 1 |
outflow part of right atrium | 4.52e-09 | 1 |
right cardiac atrium | 4.52e-09 | 1 |
dura mater | 9.74e-09 | 1 |
future meninx | 9.74e-09 | 1 |
ectomeninx | 9.74e-09 | 1 |
future dura mater | 9.74e-09 | 1 |
left cardiac atrium | 1.53e-08 | 1 |
hypodermis | 6.85e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
spindle cell sarcoma | 2.22e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.