FFCP PHASE1:Hg19::chr17:18218587..18218624,+: Difference between revisions
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{{FFCP | 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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=140775 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17921 | |||
|TSSclassifier=S | |||
|UniProt=Q8TEV9 | |||
|association_with_transcript=0bp_to_NM_144775,uc002gsy.3_5end | |||
|coexpression_cluster_id=C723 | |||
|description=CAGE_peak_1_at_SMCR8_5end | |||
|id=chr17:18218587..18218624,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.67e-37!140;CL:0000766!1.90e-32!76;CL:0002031!1.79e-30!124;CL:0000557!1.28e-28!71;CL:0002087!3.97e-28!119;CL:0000839!2.00e-27!70;CL:0000037!2.90e-27!172;CL:0000566!2.90e-27!172;CL:0000988!1.57e-26!182;CL:0002057!4.29e-26!42;CL:0002009!9.73e-26!65;CL:0002032!2.22e-25!165;CL:0000837!2.22e-25!165;CL:0002194!3.49e-25!63;CL:0000576!3.49e-25!63;CL:0000040!3.49e-25!63;CL:0000559!3.49e-25!63;CL:0000860!1.56e-24!45;CL:0000763!4.36e-21!112;CL:0000049!4.36e-21!112;CL:0000791!1.51e-09!18;CL:0000789!1.51e-09!18;CL:0002420!1.51e-09!18;CL:0002419!1.51e-09!18;CL:0000790!1.51e-09!18 | |||
|ontology_enrichment_celltype_v019=CL:0000860;7.33e-20;33!CL:0002057;7.33e-20;33!CL:0000473;7.68e-18;39!CL:0000234;7.68e-18;39!CL:0000576;4.99e-17;48!CL:0000766;3.29e-15;69!CL:0000791;1.35e-09;18!CL:0000789;1.35e-09;18!CL:0002419;1.35e-09;18!CL:0002087;3.06e-09;104!CL:0000738;7.61e-09;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.66e-39,136;CL:0000766,5.18e-35,72;CL:0002031,4.56e-32,120;CL:0000557,4.53e-31,67;CL:0000839,8.05e-30,66;CL:0002087,1.12e-29,115;CL:0000037,2.22e-28,168;CL:0002009,3.68e-28,61;CL:0000988,1.00e-27,177;CL:0002194,1.25e-27,59;CL:0000576,1.25e-27,59;CL:0000040,1.25e-27,59;CL:0000559,1.25e-27,59;CL:0000473,2.54e-27,48;CL:0000234,2.54e-27,48;CL:0002032,1.79e-26,161;CL:0000837,1.79e-26,161;CL:0000860,4.29e-26,42;CL:0002057,4.29e-26,42;CL:0000763,2.20e-22,108;CL:0000049,2.20e-22,108;CL:0000791,1.51e-09,18;CL:0000789,1.51e-09,18;CL:0002420,1.51e-09,18;CL:0002419,1.51e-09,18;CL:0000790,1.51e-09,18 | |||
|ontology_enrichment_development_v019=CL:0002057;4.75e-19;42!CL:0000790;1.35e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!5.01e-32!112;UBERON:0002390!7.26e-32!102;UBERON:0003061!7.26e-32!102;UBERON:0002371!4.46e-24!80;UBERON:0001474!1.63e-22!86;UBERON:0002405!6.43e-21!115;UBERON:0004765!3.78e-15!101;UBERON:0001434!3.78e-15!101;UBERON:0003081!7.01e-08!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,7.78e-34,108;UBERON:0002390,8.10e-34,98;UBERON:0003061,8.10e-34,98;UBERON:0002405,4.71e-28,93;UBERON:0002371,5.45e-26,76;UBERON:0001474,3.23e-24,82;UBERON:0004765,2.77e-20,90;UBERON:0001434,1.40e-15,100;UBERON:0003081,6.97e-08,203 | |||
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| |||
|short_description=p1@SMCR8 | |||
}} |
Revision as of 12:30, 11 September 2013
Short description: | p1@SMCR8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SMCR8_5end |
Coexpression cluster: | C723_CD14_CD4_Eosinophils_CD8_Natural_Neutrophils_CD19 |
Association with transcript: | 0bp_to_NM_144775, uc002gsy.3_5end |
EntrezGene: | SMCR8 |
HGNC: | 17921 |
UniProt: | Q8TEV9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 7.66e-39 | 136 |
myeloid leukocyte | 5.18e-35 | 72 |
hematopoietic lineage restricted progenitor cell | 4.56e-32 | 120 |
granulocyte monocyte progenitor cell | 4.53e-31 | 67 |
myeloid lineage restricted progenitor cell | 8.05e-30 | 66 |
nongranular leukocyte | 1.12e-29 | 115 |
hematopoietic stem cell | 2.22e-28 | 168 |
macrophage dendritic cell progenitor | 3.68e-28 | 61 |
hematopoietic cell | 1.00e-27 | 177 |
monopoietic cell | 1.25e-27 | 59 |
monocyte | 1.25e-27 | 59 |
monoblast | 1.25e-27 | 59 |
promonocyte | 1.25e-27 | 59 |
defensive cell | 2.54e-27 | 48 |
phagocyte | 2.54e-27 | 48 |
hematopoietic oligopotent progenitor cell | 1.79e-26 | 161 |
hematopoietic multipotent progenitor cell | 1.79e-26 | 161 |
classical monocyte | 4.29e-26 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.29e-26 | 42 |
myeloid cell | 2.20e-22 | 108 |
common myeloid progenitor | 2.20e-22 | 108 |
mature alpha-beta T cell | 1.51e-09 | 18 |
alpha-beta T cell | 1.51e-09 | 18 |
immature T cell | 1.51e-09 | 18 |
mature T cell | 1.51e-09 | 18 |
immature alpha-beta T cell | 1.51e-09 | 18 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 7.78e-34 | 108 |
hematopoietic system | 8.10e-34 | 98 |
blood island | 8.10e-34 | 98 |
immune system | 4.71e-28 | 93 |
bone marrow | 5.45e-26 | 76 |
bone element | 3.23e-24 | 82 |
skeletal element | 2.77e-20 | 90 |
skeletal system | 1.40e-15 | 100 |
lateral plate mesoderm | 6.97e-08 | 203 |
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