FFCP PHASE1:Hg19::chr19:12902289..12902307,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3726|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6205|TSSclassifier=S|UniProt=P17275,Q5U079|association_with_transcript=-2bp_to_ENST00000302754,NM_002229,uc002mvc.2_5end|coexpression_cluster_id=C427|description=CAGE_peak_1_at_JUNB_5end|id=chr19:12902289..12902307,+|ontology_enrichment_celltype=CL:0000738!8.36e-33!140;CL:0000766!1.08e-25!76;CL:0002031!1.43e-25!124;CL:0002087!3.35e-24!119;CL:0002057!4.95e-23!42;CL:0000037!2.99e-22!172;CL:0000566!2.99e-22!172;CL:0000557!3.91e-22!71;CL:0000988!1.10e-21!182;CL:0000860!1.92e-21!45;CL:0000839!5.02e-21!70;CL:0002009!2.79e-20!65;CL:0002032!3.40e-20!165;CL:0000837!3.40e-20!165;CL:0002194!2.49e-19!63;CL:0000576!2.49e-19!63;CL:0000040!2.49e-19!63;CL:0000559!2.49e-19!63;CL:0000763!4.17e-15!112;CL:0000049!4.17e-15!112|ontology_enrichment_celltype_v019=CL:0000860;2.12e-16;33!CL:0002057;2.12e-16;33!CL:0000473;8.60e-15;39!CL:0000234;8.60e-15;39!CL:0000576;7.82e-13;48!CL:0000766;2.62e-12;69!CL:0002087;2.15e-08;104!CL:0000738;2.26e-07;136|ontology_enrichment_celltype_v019_2=CL:0000738,1.27e-33,136;CL:0000766,5.63e-27,72;CL:0002031,2.63e-26,120;CL:0002087,6.25e-25,115;CL:0000473,4.23e-24,48;CL:0000234,4.23e-24,48;CL:0000557,2.56e-23,67;CL:0000860,4.95e-23,42;CL:0002057,4.95e-23,42;CL:0000988,1.02e-22,177;CL:0000037,1.11e-22,168;CL:0000839,3.64e-22,66;CL:0002009,1.80e-21,61;CL:0002032,1.32e-20,161;CL:0000837,1.32e-20,161;CL:0002194,1.68e-20,59;CL:0000576,1.68e-20,59;CL:0000040,1.68e-20,59;CL:0000559,1.68e-20,59;CL:0000763,1.38e-15,108;CL:0000049,1.38e-15,108|ontology_enrichment_development_v019=CL:0002057;1.15e-16;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!6.41e-27!102;UBERON:0003061!6.41e-27!102;UBERON:0002193!2.77e-24!112;UBERON:0002371!7.82e-21!80;UBERON:0001474!5.71e-19!86;UBERON:0002405!2.33e-15!115;UBERON:0004765!1.79e-14!101;UBERON:0001434!1.79e-14!101;UBERON:0000178!2.58e-07!15;UBERON:0000179!2.58e-07!15;UBERON:0000463!2.58e-07!15;UBERON:0003081!5.46e-07!216|ontology_enrichment_uberon_v019=UBERON:0000178;2.58e-07;15!UBERON:0000179;2.58e-07;15!UBERON:0000463;2.58e-07;15|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.90e-28,98;UBERON:0003061,6.90e-28,98;UBERON:0002193,4.55e-25,108;UBERON:0002371,8.28e-22,76;UBERON:0001474,8.71e-20,82;UBERON:0004765,8.71e-20,90;UBERON:0002405,4.11e-19,93;UBERON:0001434,1.19e-15,100;UBERON:0000178,2.58e-07,15;UBERON:0000179,2.58e-07,15;UBERON:0000463,2.58e-07,15;UBERON:0003081,3.77e-07,203|phase1_expression=215.833914573421,111.332272423311,148.988805129442,94.0689004519426,66.5972030696659,122.127393374052,103.852950049007,80.2284239252075,149.398179330308,372.778381672789,862.48224361392,122.327168392896,140.324032417537,843.962760834558,888.144966950814,119.001550921964,103.0607642921,89.8281411176469,101.002089349635,56.7588077733992,58.5481983871006,114.097518618024,56.9609614390803,29.564875815743,100.810739594627,334.690717176027,320.192298854788,277.534214912033,5713.22275695348,2315.25892932239,4265.33901348121,435.805660403011,490.062029852213,553.891507229848,77.0798645774001,143.448755579808,329.419692933699,2958.88947696876,2656.81284008444,3274.04300649006,264.444175077351,248.426441836557,314.499768081342,1071.87581628295,1137.02871455963,1188.41931575911,1903.59381225756,1787.7579771189,2015.87876815623,2876.63623082918,2229.62278962929,2573.63610787747,2584.55836848243,2187.54759266559,2025.98023945135,1987.08613621174,1887.69183995012,1984.98253810343,3252.14135644084,2831.55680589237,3114.85047689293,1399.22921539205,1391.65793922613,1554.86788994327,2949.97691065956,2577.63107577185,3097.91786650399,1679.84857590659,1427.82023063451,1974.24659836951,2028.08833382179,2255.70052042383,2578.53553286833,3925.96824082113,4383.9006652792,2733.94873742922,4260.06333623083,3853.23871652737,3029.35585806657,2475.050666649,2910.54882077709,2173.52076564538,255.194554468918,211.355642558445,225.935350481343,828.710092224157,229.026504584599,339.6786920131,255.163320894957,269.997212533508,3114.7333669669,3755.38182602715,3958.05700400862,1886.0848588227,2174.21271580538,145.388014795843,5631.40729881881,5871.97380623527,12022.5476539963,271.343682019071,6958.44039262716,4616.11610591365,3010.07295390223,542.23469366014,4465.63634550358,3002.89194108098,2486.79188095414,442.427418332482,387.316737033317,177.59293697197,168.849860867153,261.981989504487,5786.73484083625,3398.30359839554,2781.69028845043,216.194225866956,3698.07776325854,3720.45435224043,2908.7143794562,288.938830791956,231.785709572885,178.684984356294,479.882904500862,229.352007188718,432.260313871117,354.929100813981,261.939831017814,4643.00329646559,3755.12778899623,3709.09780784236,1104.44510440225,462.783593195509,184.377814178371,148.912930782441,242.647548747771,363.419916072707,469.218708760149,1041.39862244764,179.899757063221,130.155156310525,224.681381803016,326.727303829044,777.4061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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3726 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6205 | |||
|TSSclassifier=S | |||
|UniProt=P17275,Q5U079 | |||
|association_with_transcript=-2bp_to_ENST00000302754,NM_002229,uc002mvc.2_5end | |||
|coexpression_cluster_id=C427 | |||
|description=CAGE_peak_1_at_JUNB_5end | |||
|id=chr19:12902289..12902307,+ | |||
|ontology_enrichment_celltype=CL:0000738!8.36e-33!140;CL:0000766!1.08e-25!76;CL:0002031!1.43e-25!124;CL:0002087!3.35e-24!119;CL:0002057!4.95e-23!42;CL:0000037!2.99e-22!172;CL:0000566!2.99e-22!172;CL:0000557!3.91e-22!71;CL:0000988!1.10e-21!182;CL:0000860!1.92e-21!45;CL:0000839!5.02e-21!70;CL:0002009!2.79e-20!65;CL:0002032!3.40e-20!165;CL:0000837!3.40e-20!165;CL:0002194!2.49e-19!63;CL:0000576!2.49e-19!63;CL:0000040!2.49e-19!63;CL:0000559!2.49e-19!63;CL:0000763!4.17e-15!112;CL:0000049!4.17e-15!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.12e-16;33!CL:0002057;2.12e-16;33!CL:0000473;8.60e-15;39!CL:0000234;8.60e-15;39!CL:0000576;7.82e-13;48!CL:0000766;2.62e-12;69!CL:0002087;2.15e-08;104!CL:0000738;2.26e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.27e-33,136;CL:0000766,5.63e-27,72;CL:0002031,2.63e-26,120;CL:0002087,6.25e-25,115;CL:0000473,4.23e-24,48;CL:0000234,4.23e-24,48;CL:0000557,2.56e-23,67;CL:0000860,4.95e-23,42;CL:0002057,4.95e-23,42;CL:0000988,1.02e-22,177;CL:0000037,1.11e-22,168;CL:0000839,3.64e-22,66;CL:0002009,1.80e-21,61;CL:0002032,1.32e-20,161;CL:0000837,1.32e-20,161;CL:0002194,1.68e-20,59;CL:0000576,1.68e-20,59;CL:0000040,1.68e-20,59;CL:0000559,1.68e-20,59;CL:0000763,1.38e-15,108;CL:0000049,1.38e-15,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.15e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.41e-27!102;UBERON:0003061!6.41e-27!102;UBERON:0002193!2.77e-24!112;UBERON:0002371!7.82e-21!80;UBERON:0001474!5.71e-19!86;UBERON:0002405!2.33e-15!115;UBERON:0004765!1.79e-14!101;UBERON:0001434!1.79e-14!101;UBERON:0000178!2.58e-07!15;UBERON:0000179!2.58e-07!15;UBERON:0000463!2.58e-07!15;UBERON:0003081!5.46e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.58e-07;15!UBERON:0000179;2.58e-07;15!UBERON:0000463;2.58e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.90e-28,98;UBERON:0003061,6.90e-28,98;UBERON:0002193,4.55e-25,108;UBERON:0002371,8.28e-22,76;UBERON:0001474,8.71e-20,82;UBERON:0004765,8.71e-20,90;UBERON:0002405,4.11e-19,93;UBERON:0001434,1.19e-15,100;UBERON:0000178,2.58e-07,15;UBERON:0000179,2.58e-07,15;UBERON:0000463,2.58e-07,15;UBERON:0003081,3.77e-07,203 | |||
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| |||
|short_description=p1@JUNB | |||
}} |
Revision as of 18:49, 11 September 2013
Short description: | p1@JUNB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_JUNB_5end |
Coexpression cluster: | C427_Eosinophils_CD4_Peripheral_Neutrophils_Basophils_mature_Mast |
Association with transcript: | -2bp_to_ENST00000302754, NM_002229, uc002mvc.2_5end |
EntrezGene: | JUNB |
HGNC: | 6205 |
UniProt: | P17275Q5U079 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.27e-33 | 136 |
myeloid leukocyte | 5.63e-27 | 72 |
hematopoietic lineage restricted progenitor cell | 2.63e-26 | 120 |
nongranular leukocyte | 6.25e-25 | 115 |
defensive cell | 4.23e-24 | 48 |
phagocyte | 4.23e-24 | 48 |
granulocyte monocyte progenitor cell | 2.56e-23 | 67 |
classical monocyte | 4.95e-23 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.95e-23 | 42 |
hematopoietic cell | 1.02e-22 | 177 |
hematopoietic stem cell | 1.11e-22 | 168 |
myeloid lineage restricted progenitor cell | 3.64e-22 | 66 |
macrophage dendritic cell progenitor | 1.80e-21 | 61 |
hematopoietic oligopotent progenitor cell | 1.32e-20 | 161 |
hematopoietic multipotent progenitor cell | 1.32e-20 | 161 |
monopoietic cell | 1.68e-20 | 59 |
monocyte | 1.68e-20 | 59 |
monoblast | 1.68e-20 | 59 |
promonocyte | 1.68e-20 | 59 |
myeloid cell | 1.38e-15 | 108 |
common myeloid progenitor | 1.38e-15 | 108 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.90e-28 | 98 |
blood island | 6.90e-28 | 98 |
hemolymphoid system | 4.55e-25 | 108 |
bone marrow | 8.28e-22 | 76 |
bone element | 8.71e-20 | 82 |
skeletal element | 8.71e-20 | 90 |
immune system | 4.11e-19 | 93 |
skeletal system | 1.19e-15 | 100 |
blood | 2.58e-07 | 15 |
haemolymphatic fluid | 2.58e-07 | 15 |
organism substance | 2.58e-07 | 15 |
lateral plate mesoderm | 3.77e-07 | 203 |
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