FFCP PHASE1:Hg19::chr19:6062285..6062295,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C677|description=CAGE_peak_at_chr19:6062285..6062295,-|id=chr19:6062285..6062295,-|ontology_enrichment_celltype=CL:0002057!7.86e-65!42;CL:0000860!7.95e-60!45;CL:0000766!1.94e-53!76;CL:0000557!7.83e-49!71;CL:0000839!8.16e-47!70;CL:0002009!3.71e-45!65;CL:0002194!5.46e-44!63;CL:0000576!5.46e-44!63;CL:0000040!5.46e-44!63;CL:0000559!5.46e-44!63;CL:0000738!2.39e-43!140;CL:0000763!6.39e-42!112;CL:0000049!6.39e-42!112;CL:0000037!1.02e-38!172;CL:0000566!1.02e-38!172;CL:0000988!9.13e-36!182;CL:0002031!1.86e-34!124;CL:0002032!2.18e-34!165;CL:0000837!2.18e-34!165;CL:0002087!3.97e-34!119;CL:0000134!5.01e-13!358;CL:0002320!1.72e-12!365;CL:0000219!1.32e-10!390;CL:0000624!2.00e-10!6;CL:0000767!2.21e-09!3;CL:0000034!7.97e-09!444;CL:0000842!2.08e-08!3;CL:0000048!2.20e-08!430;CL:0000723!4.53e-08!436;CL:0002393!6.18e-07!9;CL:0002397!6.18e-07!9|ontology_enrichment_celltype_v019=CL:0000860;5.36e-46;33!CL:0002057;5.36e-46;33!CL:0000766;2.21e-30;69!CL:0000473;3.99e-30;39!CL:0000234;3.99e-30;39!CL:0000576;4.21e-24;48!CL:0000767;2.62e-23;3!CL:0000094;2.75e-15;8!CL:0000097;5.93e-14;5!CL:0000763;1.55e-12;100!CL:0000081;3.63e-11;11!CL:0000163;5.64e-08;9!CL:0000738;6.96e-08;136|ontology_enrichment_celltype_v019_2=CL:0000766,7.73e-50,72;CL:0000860,6.66e-42,42;CL:0002057,6.66e-42,42;CL:0000557,7.32e-40,67;CL:0000839,2.29e-36,66;CL:0000473,2.67e-36,48;CL:0000234,2.67e-36,48;CL:0000763,3.30e-35,108;CL:0000049,3.30e-35,108;CL:0002009,3.67e-31,61;CL:0000738,9.30e-30,136;CL:0002194,1.88e-28,59;CL:0000576,1.88e-28,59;CL:0000040,1.88e-28,59;CL:0000559,1.88e-28,59;CL:0002032,1.56e-24,161;CL:0000837,1.56e-24,161;CL:0000037,2.40e-23,168;CL:0000767,3.33e-23,3;CL:0002031,3.60e-23,120;CL:0000988,5.89e-22,177;CL:0000094,2.30e-15,8;CL:0002087,3.68e-15,115;CL:0000097,2.92e-14,5;CL:0002028,2.92e-14,5;CL:0000081,3.20e-11,11;CL:0000134,7.24e-09,354;CL:0002320,1.31e-08,361;CL:0000163,3.84e-08,9;CL:0000219,1.06e-07,386;CL:0000034,4.64e-07,441|ontology_enrichment_development_v019=CL:0002057;7.74e-35;42!CL:0000049;7.45e-13;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!1.90e-44!80;UBERON:0001474!1.44e-40!86;UBERON:0002390!2.38e-38!102;UBERON:0003061!2.38e-38!102;UBERON:0002193!7.36e-34!112;UBERON:0004765!7.04e-33!101;UBERON:0001434!7.04e-33!101;UBERON:0002405!1.62e-27!115;UBERON:0002204!1.52e-15!167;UBERON:0003081!1.39e-14!216;UBERON:0002384!9.27e-12!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.73e-35,76;UBERON:0001474,5.19e-32,82;UBERON:0004765,7.02e-29,90;UBERON:0002405,7.65e-28,93;UBERON:0002390,2.97e-26,98;UBERON:0003061,2.97e-26,98;UBERON:0001434,1.16e-25,100;UBERON:0002193,1.64e-23,108;UBERON:0002204,5.85e-14,167;UBERON:0003081,3.18e-12,203;UBERON:0002384,2.94e-08,371|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,1.53531759238885,5.26374819274658,0,0,0,0,0,0.293600439334847,0.553995408531877,0.802177789880567,1.95309783644267,0,0,0,1.30858414901608,1.13362783106643,0.242584061187816,1.39457422143411,1.23350366406548,0.929119112685311,0.575384784644301,1.7931249457037,1.41889337933151,1.37898272294647,0.645484683583826,1.35426486594342,1.31769637679823,0.545812300115692,0.674170453335254,1.53041946185451,1.28371610830437,0.639337125799041,0.329851300186716,1.79517291859469,0.426224750532694,0.290209238628584,0.56738522469114,0.622822248995575,1.00499466102697,2.08593167368081,1.08594422352558,0,0.736555271975129,0,0.211255286311942,0,0.209658645508376,0.336985893439485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0.560508562981536,0,0.196709770113833,0.393010762749165,0.822405995998037,0,1.30368906653436,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65862492432618,1.44119953416961,1.51490920111656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431255149719035,0.385029108839245,0,0,0,0,0,0,0,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.647142602455851,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0.423347165447766,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C677 | |||
|description=CAGE_peak_at_chr19:6062285..6062295,- | |||
|id=chr19:6062285..6062295,- | |||
|ontology_enrichment_celltype=CL:0002057!7.86e-65!42;CL:0000860!7.95e-60!45;CL:0000766!1.94e-53!76;CL:0000557!7.83e-49!71;CL:0000839!8.16e-47!70;CL:0002009!3.71e-45!65;CL:0002194!5.46e-44!63;CL:0000576!5.46e-44!63;CL:0000040!5.46e-44!63;CL:0000559!5.46e-44!63;CL:0000738!2.39e-43!140;CL:0000763!6.39e-42!112;CL:0000049!6.39e-42!112;CL:0000037!1.02e-38!172;CL:0000566!1.02e-38!172;CL:0000988!9.13e-36!182;CL:0002031!1.86e-34!124;CL:0002032!2.18e-34!165;CL:0000837!2.18e-34!165;CL:0002087!3.97e-34!119;CL:0000134!5.01e-13!358;CL:0002320!1.72e-12!365;CL:0000219!1.32e-10!390;CL:0000624!2.00e-10!6;CL:0000767!2.21e-09!3;CL:0000034!7.97e-09!444;CL:0000842!2.08e-08!3;CL:0000048!2.20e-08!430;CL:0000723!4.53e-08!436;CL:0002393!6.18e-07!9;CL:0002397!6.18e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.36e-46;33!CL:0002057;5.36e-46;33!CL:0000766;2.21e-30;69!CL:0000473;3.99e-30;39!CL:0000234;3.99e-30;39!CL:0000576;4.21e-24;48!CL:0000767;2.62e-23;3!CL:0000094;2.75e-15;8!CL:0000097;5.93e-14;5!CL:0000763;1.55e-12;100!CL:0000081;3.63e-11;11!CL:0000163;5.64e-08;9!CL:0000738;6.96e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,7.73e-50,72;CL:0000860,6.66e-42,42;CL:0002057,6.66e-42,42;CL:0000557,7.32e-40,67;CL:0000839,2.29e-36,66;CL:0000473,2.67e-36,48;CL:0000234,2.67e-36,48;CL:0000763,3.30e-35,108;CL:0000049,3.30e-35,108;CL:0002009,3.67e-31,61;CL:0000738,9.30e-30,136;CL:0002194,1.88e-28,59;CL:0000576,1.88e-28,59;CL:0000040,1.88e-28,59;CL:0000559,1.88e-28,59;CL:0002032,1.56e-24,161;CL:0000837,1.56e-24,161;CL:0000037,2.40e-23,168;CL:0000767,3.33e-23,3;CL:0002031,3.60e-23,120;CL:0000988,5.89e-22,177;CL:0000094,2.30e-15,8;CL:0002087,3.68e-15,115;CL:0000097,2.92e-14,5;CL:0002028,2.92e-14,5;CL:0000081,3.20e-11,11;CL:0000134,7.24e-09,354;CL:0002320,1.31e-08,361;CL:0000163,3.84e-08,9;CL:0000219,1.06e-07,386;CL:0000034,4.64e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;7.74e-35;42!CL:0000049;7.45e-13;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.90e-44!80;UBERON:0001474!1.44e-40!86;UBERON:0002390!2.38e-38!102;UBERON:0003061!2.38e-38!102;UBERON:0002193!7.36e-34!112;UBERON:0004765!7.04e-33!101;UBERON:0001434!7.04e-33!101;UBERON:0002405!1.62e-27!115;UBERON:0002204!1.52e-15!167;UBERON:0003081!1.39e-14!216;UBERON:0002384!9.27e-12!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.73e-35,76;UBERON:0001474,5.19e-32,82;UBERON:0004765,7.02e-29,90;UBERON:0002405,7.65e-28,93;UBERON:0002390,2.97e-26,98;UBERON:0003061,2.97e-26,98;UBERON:0001434,1.16e-25,100;UBERON:0002193,1.64e-23,108;UBERON:0002204,5.85e-14,167;UBERON:0003081,3.18e-12,203;UBERON:0002384,2.94e-08,371 | |||
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|short_description=p@chr19:6062285..6062295,- | |||
}} |
Revision as of 22:42, 11 September 2013
Short description: | p@chr19:6062285..6062295, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:6062285..6062295, - |
Coexpression cluster: | C677_Basophils_CD14_Eosinophils_Neutrophils_CD34_Peripheral_immature |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 7.73e-50 | 72 |
classical monocyte | 6.66e-42 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.66e-42 | 42 |
granulocyte monocyte progenitor cell | 7.32e-40 | 67 |
myeloid lineage restricted progenitor cell | 2.29e-36 | 66 |
defensive cell | 2.67e-36 | 48 |
phagocyte | 2.67e-36 | 48 |
myeloid cell | 3.30e-35 | 108 |
common myeloid progenitor | 3.30e-35 | 108 |
macrophage dendritic cell progenitor | 3.67e-31 | 61 |
leukocyte | 9.30e-30 | 136 |
monopoietic cell | 1.88e-28 | 59 |
monocyte | 1.88e-28 | 59 |
monoblast | 1.88e-28 | 59 |
promonocyte | 1.88e-28 | 59 |
hematopoietic oligopotent progenitor cell | 1.56e-24 | 161 |
hematopoietic multipotent progenitor cell | 1.56e-24 | 161 |
hematopoietic stem cell | 2.40e-23 | 168 |
basophil | 3.33e-23 | 3 |
hematopoietic lineage restricted progenitor cell | 3.60e-23 | 120 |
hematopoietic cell | 5.89e-22 | 177 |
granulocyte | 2.30e-15 | 8 |
nongranular leukocyte | 3.68e-15 | 115 |
mast cell | 2.92e-14 | 5 |
basophil mast progenitor cell | 2.92e-14 | 5 |
blood cell | 3.20e-11 | 11 |
mesenchymal cell | 7.24e-09 | 354 |
connective tissue cell | 1.31e-08 | 361 |
endocrine cell | 3.84e-08 | 9 |
motile cell | 1.06e-07 | 386 |
stem cell | 4.64e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.73e-35 | 76 |
bone element | 5.19e-32 | 82 |
skeletal element | 7.02e-29 | 90 |
immune system | 7.65e-28 | 93 |
hematopoietic system | 2.97e-26 | 98 |
blood island | 2.97e-26 | 98 |
skeletal system | 1.16e-25 | 100 |
hemolymphoid system | 1.64e-23 | 108 |
musculoskeletal system | 5.85e-14 | 167 |
lateral plate mesoderm | 3.18e-12 | 203 |
connective tissue | 2.94e-08 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.