FFCP PHASE1:Hg19::chr1:156100417..156100436,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4000|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=6636|TSSclassifier=S|UniProt=P02545|association_with_transcript=-62bp_to_M13452_5end|description=CAGE_peak_10_at_LMNA_5end|id=chr1:156100417..156100436,+|ontology_enrichment_celltype=CL:0000548!1.08e-12!679;CL:0000004!1.08e-12!679;CL:0000255!1.08e-12!679;CL:0000012!1.73e-12!682;CL:0000144!5.51e-12!625;CL:0002371!6.08e-11!591;CL:0000055!2.09e-10!180;CL:0000057!2.27e-10!75;CL:0002620!3.99e-08!23;CL:0000222!1.11e-07!119;CL:0000063!4.38e-07!578|ontology_enrichment_celltype_v019=CL:0000860;9.65e-11;33!CL:0002057;9.65e-11;33!CL:0000473;1.61e-07;39!CL:0000234;1.61e-07;39|ontology_enrichment_celltype_v019_2=CL:0000048,5.35e-08,427;CL:0000723,9.29e-08,433;CL:0000860,1.22e-07,42;CL:0002057,1.22e-07,42;CL:0000034,2.57e-07,441;CL:0002620,8.50e-07,23;CL:0000222,9.20e-07,121|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000926!1.18e-12!448;UBERON:0004120!1.18e-12!448;UBERON:0006603!1.18e-12!448;UBERON:0000914!1.09e-09!83;UBERON:0002329!1.09e-09!83;UBERON:0003077!1.09e-09!83;UBERON:0003059!1.09e-09!83;UBERON:0007282!1.09e-09!83;UBERON:0009618!1.09e-09!83;UBERON:0007285!1.09e-09!83;UBERON:0002199!1.24e-08!45;UBERON:0002416!1.24e-08!45;UBERON:0002204!1.45e-08!167;UBERON:0004290!3.52e-08!70;UBERON:0003102!4.35e-08!95;UBERON:0000468!1.28e-07!659;UBERON:0000486!2.84e-07!82;UBERON:0002097!3.76e-07!40|ontology_enrichment_uberon_v019=UBERON:0002067;1.55e-07;9!UBERON:0003102;3.69e-07;50|ontology_enrichment_uberon_v019_2=UBERON:0000926,5.22e-12,315;UBERON:0004120,5.22e-12,315;UBERON:0006603,5.22e-12,315;UBERON:0002204,6.32e-11,167;UBERON:0002199,2.74e-09,46;UBERON:0002416,2.74e-09,46;UBERON:0007503,5.44e-09,78;UBERON:0007524,6.42e-08,73;UBERON:0002067,9.47e-08,9;UBERON:0004016,9.47e-08,9;UBERON:0010083,9.47e-08,9;UBERON:0002329,9.87e-08,71;UBERON:0003059,9.87e-08,71;UBERON:0007282,9.87e-08,71;UBERON:0004290,9.87e-08,71;UBERON:0009618,9.87e-08,71;UBERON:0003077,1.74e-07,72;UBERON:0007285,1.74e-07,72;UBERON:0000486,2.14e-07,83;UBERON:0002097,3.19e-07,41;UBERON:0003081,3.71e-07,203|phase1_expression=1.09007027562334,1.92690471501885,0.845726424575827,4.00293193412522,2.23480547213644,2.61701557230111,2.53299878168311,1.89515962028049,1.04474251279935,0.982935746006035,1.39560233594486,0,0.791300934685361,0.74259811776028,1.65698687863958,1.34465029290355,0,0,0.487932798790507,0.369363174230364,1.22400414746552,1.25381888591235,0,1.23186982565596,0.627713197974014,0.305653622991805,0,0.0787107813136792,0,0.383829398097213,0.77408061658038,6.43594857135249,3.31326510656075,3.32778609150109,0,0,0,0,0.601633342410425,0.868043482863407,0,0,0.515151135268373,1.89017710413434,2.64513160582167,1.94067248950253,3.48643555358527,4.52284676824008,2.16794459626573,2.8769239232215,1.2808035326455,0.945928919554341,1.37898272294647,0,4.06279459783025,2.63539275359647,2.18324920046277,1.79778787556068,3.36692281607993,1.92557416245656,4.47535988059329,0.659702600373432,1.39624560335142,2.13112375266347,1.16083695451434,0.56738522469114,1.86846674698672,3.01498398308092,3.12889751052121,0.868755378820466,2.42159801053347,0.736555271975129,3.16462387440884,0.422510572623884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,1.17903228824749,0.616804496998528,0,0,0,0,0.111410456885174,0.294605907474837,0.443067789167242,0,0,0.130059347559878,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,1.06976078313403,0.289648807765598,2.43806866313962,0,0.255725123687061,0.361439152384566,0,1.73815822752988,0,0.973269740605272,0.283604451492204,0.665188192387692,0.43917392846563,0.0654895377488563,1.09288586487763,1.48313777113772,0,0,0.664789802594326,0,0,0,0.198762407366705,0,1.04142150482278,0.56530794192401,1.67799774483962,1.92582629358047,2.92592953151535,0.775250277507987,0.35576626268671,0,0.402829317109147,0,1.22031028774085,1.10298924103761,1.62028389576352,0.17859945656816,0.44905874525234,0.225222960966644,3.06633274931766,1.89853131913626,1.28241220751285,0,0,0.436094052142534,1.98788780678127,0.633152558322899,0.926864265692532,1.43418310374407,2.83734705758686,2.24271040056923,0,0.98667019366864,0,0.942974704487816,1.30769522490767,0.151357427644931,0,0.70296429550139,1.87296046098192,1.71141546463335,2.83952493048422,1.64408298101271,1.13311061057692,1.26405726032024,0.204154171254893,3.68502951935304,0.929932030581889,0,1.97813543422845,0,2.87447256726495,0.673344455816265,1.25118519871964,0.554128230968366,2.19488810440419,5.51678032438235,1.35214253015937,0.340296549480063,4.84352016359927,0.427114777637135,0.847727604638247,3.60109315301283,0.824420233907511,3.86460810068444,1.30281799432113,1.35021065793013,0.876933046450788,5.55354303337052,0.828449087780694,0.80823028409406,4.26011511019937,0.705264687593482,1.69560592310488,0.773043412653187,0,0,0.121973706129595,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4000 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=6636 | |||
|TSSclassifier=S | |||
|UniProt=P02545 | |||
|association_with_transcript=-62bp_to_M13452_5end | |||
|description=CAGE_peak_10_at_LMNA_5end | |||
|id=chr1:156100417..156100436,+ | |||
|ontology_enrichment_celltype=CL:0000548!1.08e-12!679;CL:0000004!1.08e-12!679;CL:0000255!1.08e-12!679;CL:0000012!1.73e-12!682;CL:0000144!5.51e-12!625;CL:0002371!6.08e-11!591;CL:0000055!2.09e-10!180;CL:0000057!2.27e-10!75;CL:0002620!3.99e-08!23;CL:0000222!1.11e-07!119;CL:0000063!4.38e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0000860;9.65e-11;33!CL:0002057;9.65e-11;33!CL:0000473;1.61e-07;39!CL:0000234;1.61e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,5.35e-08,427;CL:0000723,9.29e-08,433;CL:0000860,1.22e-07,42;CL:0002057,1.22e-07,42;CL:0000034,2.57e-07,441;CL:0002620,8.50e-07,23;CL:0000222,9.20e-07,121 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!1.18e-12!448;UBERON:0004120!1.18e-12!448;UBERON:0006603!1.18e-12!448;UBERON:0000914!1.09e-09!83;UBERON:0002329!1.09e-09!83;UBERON:0003077!1.09e-09!83;UBERON:0003059!1.09e-09!83;UBERON:0007282!1.09e-09!83;UBERON:0009618!1.09e-09!83;UBERON:0007285!1.09e-09!83;UBERON:0002199!1.24e-08!45;UBERON:0002416!1.24e-08!45;UBERON:0002204!1.45e-08!167;UBERON:0004290!3.52e-08!70;UBERON:0003102!4.35e-08!95;UBERON:0000468!1.28e-07!659;UBERON:0000486!2.84e-07!82;UBERON:0002097!3.76e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0002067;1.55e-07;9!UBERON:0003102;3.69e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,5.22e-12,315;UBERON:0004120,5.22e-12,315;UBERON:0006603,5.22e-12,315;UBERON:0002204,6.32e-11,167;UBERON:0002199,2.74e-09,46;UBERON:0002416,2.74e-09,46;UBERON:0007503,5.44e-09,78;UBERON:0007524,6.42e-08,73;UBERON:0002067,9.47e-08,9;UBERON:0004016,9.47e-08,9;UBERON:0010083,9.47e-08,9;UBERON:0002329,9.87e-08,71;UBERON:0003059,9.87e-08,71;UBERON:0007282,9.87e-08,71;UBERON:0004290,9.87e-08,71;UBERON:0009618,9.87e-08,71;UBERON:0003077,1.74e-07,72;UBERON:0007285,1.74e-07,72;UBERON:0000486,2.14e-07,83;UBERON:0002097,3.19e-07,41;UBERON:0003081,3.71e-07,203 | |||
|phase1_expression=1.09007027562334,1.92690471501885,0.845726424575827,4.00293193412522,2.23480547213644,2.61701557230111,2.53299878168311,1.89515962028049,1.04474251279935,0.982935746006035,1.39560233594486,0,0.791300934685361,0.74259811776028,1.65698687863958,1.34465029290355,0,0,0.487932798790507,0.369363174230364,1.22400414746552,1.25381888591235,0,1.23186982565596,0.627713197974014,0.305653622991805,0,0.0787107813136792,0,0.383829398097213,0.77408061658038,6.43594857135249,3.31326510656075,3.32778609150109,0,0,0,0,0.601633342410425,0.868043482863407,0,0,0.515151135268373,1.89017710413434,2.64513160582167,1.94067248950253,3.48643555358527,4.52284676824008,2.16794459626573,2.8769239232215,1.2808035326455,0.945928919554341,1.37898272294647,0,4.06279459783025,2.63539275359647,2.18324920046277,1.79778787556068,3.36692281607993,1.92557416245656,4.47535988059329,0.659702600373432,1.39624560335142,2.13112375266347,1.16083695451434,0.56738522469114,1.86846674698672,3.01498398308092,3.12889751052121,0.868755378820466,2.42159801053347,0.736555271975129,3.16462387440884,0.422510572623884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,1.17903228824749,0.616804496998528,0,0,0,0,0.111410456885174,0.294605907474837,0.443067789167242,0,0,0.130059347559878,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0.127986611154418,0,0,0,0.201606743224732,1.06976078313403,0.289648807765598,2.43806866313962,0,0.255725123687061,0.361439152384566,0,1.73815822752988,0,0.973269740605272,0.283604451492204,0.665188192387692,0.43917392846563,0.0654895377488563,1.09288586487763,1.48313777113772,0,0,0.664789802594326,0,0,0,0.198762407366705,0,1.04142150482278,0.56530794192401,1.67799774483962,1.92582629358047,2.92592953151535,0.775250277507987,0.35576626268671,0,0.402829317109147,0,1.22031028774085,1.10298924103761,1.62028389576352,0.17859945656816,0.44905874525234,0.225222960966644,3.06633274931766,1.89853131913626,1.28241220751285,0,0,0.436094052142534,1.98788780678127,0.633152558322899,0.926864265692532,1.43418310374407,2.83734705758686,2.24271040056923,0,0.98667019366864,0,0.942974704487816,1.30769522490767,0.151357427644931,0,0.70296429550139,1.87296046098192,1.71141546463335,2.83952493048422,1.64408298101271,1.13311061057692,1.26405726032024,0.204154171254893,3.68502951935304,0.929932030581889,0,1.97813543422845,0,2.87447256726495,0.673344455816265,1.25118519871964,0.554128230968366,2.19488810440419,5.51678032438235,1.35214253015937,0.340296549480063,4.84352016359927,0.427114777637135,0.847727604638247,3.60109315301283,0.824420233907511,3.86460810068444,1.30281799432113,1.35021065793013,0.876933046450788,5.55354303337052,0.828449087780694,0.80823028409406,4.26011511019937,0.705264687593482,1.69560592310488,0.773043412653187,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.310983165046111,0,0,4.69348596989448,3.85944562915731,5.52539685409922,0,2.88751792667834,0.828147600278907,2.19160097101532,1.20505514941741,1.8749975364507,0.871517776369625,1.42362371466658,0.808987848960987,2.35465758150415,0.769494313892781,2.95262181849859,0,0.8231480226628,0,0,0,0.590789906681404,0,0,0.171567810298526,0.548751427043128,0,1.60846355858609,0,0.977424915930974,3.11980435583874,2.88662684050547,0,0,0.721832238805369,0,0.190254152234598,0.790204397959275,1.71697232418975,0,0,0.297262324577456,0.93733833986777,0.335964256397719,0.141775097242386,0.358234090811393,0.581267877027924,3.83382679165211,0,0.088048434013226,5.39053100406007,2.01767934783746,2.65109110195398,0.190493682876507,1.14596527667483,0,1.71072446022705,1.02827492703324,2.10240140490742,0.285826432630578,0.112131084345361,0,0.36669142910475,0.129271715757778,0,2.535908257668,0.26593811658487,1.04007436911366,0.514414748524284,2.83698264046557,2.66422179016099,0,0,0.823240336780769,0.65147236858747,0,1.58390374586686,1.50719688529793,1.74306691720059,0.699810938274399,0,0.502257091432126,4.21667878966063,0.479249710983165,2.29723871668228,0,1.15825045334063,3.90405012845728,0.716243852959582,0,0,0.646882724578552,0.128343036279748,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0.24538298343828,2.00068208423871,0.813795071099207,1.24782516918484,3.03329280955175,1.57702415033935,1.05427273493442,1.20378439891088,0,1.03473071292505,0,1.65932251687533,0.868836144680828,0.195801157462741,1.02943027143257,0,0.431428401637234,0,0.909382714338778,1.66435439510497,2.41912234663744,0.992431231275107,0.153461973288062,1.68396056659844,0.384417447767103,0,0.804269605718038,1.48418066444991,1.23367755042124,1.59805552781814,0.164254312027618,0.519254429183621,2.78904908303902,0,1.40354529212299,0.276242966807689,0.574072240823034,2.54927635209404,1.31124414959424,0,0.15403067420883,0,2.92278449306521,0,2.27466768141793,1.87103075804167,0.431831832204279,1.54227252690289,0.541892875087706,1.00337954770971,0,0,1.11937377361089,0,0.522870902049801,0.256450125116389,0,0.976135183992909,0.103041011647722,0.54941678891006,0.495056999523528,0,0.650060246036521,0,0.193341436584244,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| |||
|short_description=p10@LMNA | |||
}} |
Revision as of 00:51, 12 September 2013
Short description: | p10@LMNA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_LMNA_5end |
Coexpression cluster: | NA |
Association with transcript: | -62bp_to_M13452_5end |
EntrezGene: | LMNA |
HGNC: | 6636 |
UniProt: | P02545 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 5.35e-08 | 427 |
somatic stem cell | 9.29e-08 | 433 |
classical monocyte | 1.22e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.22e-07 | 42 |
stem cell | 2.57e-07 | 441 |
skin fibroblast | 8.50e-07 | 23 |
mesodermal cell | 9.20e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 5.22e-12 | 315 |
mesoderm-derived structure | 5.22e-12 | 315 |
presumptive mesoderm | 5.22e-12 | 315 |
musculoskeletal system | 6.32e-11 | 167 |
integument | 2.74e-09 | 46 |
integumental system | 2.74e-09 | 46 |
epithelial vesicle | 5.44e-09 | 78 |
dense mesenchyme tissue | 6.42e-08 | 73 |
dermis | 9.47e-08 | 9 |
dermatome | 9.47e-08 | 9 |
future dermis | 9.47e-08 | 9 |
somite | 9.87e-08 | 71 |
presomitic mesoderm | 9.87e-08 | 71 |
presumptive segmental plate | 9.87e-08 | 71 |
dermomyotome | 9.87e-08 | 71 |
trunk paraxial mesoderm | 9.87e-08 | 71 |
paraxial mesoderm | 1.74e-07 | 72 |
presumptive paraxial mesoderm | 1.74e-07 | 72 |
multilaminar epithelium | 2.14e-07 | 83 |
skin of body | 3.19e-07 | 41 |
lateral plate mesoderm | 3.71e-07 | 203 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.