FFCP PHASE1:Hg19::chr1:202183200..202183217,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=59352|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=19719|TSSclassifier=S|UniProt=Q9HBX8|association_with_transcript=-65bp_to_ENST00000439764,NM_001017404,uc001gxw.2_5end|description=CAGE_peak_3_at_LGR6_5end|id=chr1:202183200..202183217,+|ontology_enrichment_celltype=CL:0000066!8.21e-08!254|ontology_enrichment_celltype_v019=CL:0002577;2.17e-17;3!CL:0000349;2.89e-10;19!CL:0002178;2.04e-08;3!CL:0002166;6.05e-08;3|ontology_enrichment_celltype_v019_2=CL:0002577,2.12e-17,3;CL:0000349,2.89e-10,19;CL:0002178,2.28e-08,3;CL:0002166,5.07e-08,3|ontology_enrichment_development_v019=UBERON:0006242;3.31e-07;1|ontology_enrichment_disease=DOID:305!5.60e-10!106;DOID:299!9.04e-08!25|ontology_enrichment_disease_v019=DOID:299;1.73e-07;25!DOID:0050619;5.41e-07;1!DOID:1357;5.41e-07;1|ontology_enrichment_disease_v019_2=DOID:299,1.67e-07,25;DOID:305,3.44e-07,106;DOID:0050619,5.57e-07,1;DOID:1357,5.57e-07,1|ontology_enrichment_uberon=UBERON:0007023!6.54e-11!115;UBERON:0005631!1.87e-10!14;UBERON:0000158!1.87e-10!14;UBERON:0004119!1.46e-09!169;UBERON:0000925!1.46e-09!169;UBERON:0006595!1.46e-09!169;UBERON:0000062!9.72e-08!511;UBERON:0001987!3.40e-07!4;UBERON:0004340!3.40e-07!4;UBERON:0003100!3.59e-07!41;UBERON:0001007!9.51e-07!155;UBERON:0001555!9.51e-07!155;UBERON:0007026!9.51e-07!155|ontology_enrichment_uberon_v019=UBERON:0001987;3.56e-13;4!UBERON:0002110;1.49e-08;3!UBERON:0000478;5.37e-08;24!UBERON:0002294;8.49e-08;7!UBERON:0001173;8.49e-08;7!UBERON:0007029;4.55e-07;1!UBERON:0001764;5.41e-07;1!UBERON:0001825;5.41e-07;1!UBERON:0002146;7.18e-07;1!UBERON:0004913;7.18e-07;1!UBERON:0003703;7.18e-07;1!UBERON:0005623;7.18e-07;1!UBERON:0001174;7.18e-07;1!UBERON:0004914;7.18e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.77e-14,14;UBERON:0000158,3.77e-14,14;UBERON:0001987,3.49e-13,4;UBERON:0004340,3.49e-13,4;UBERON:0003124,4.64e-13,7;UBERON:0002110,1.58e-08,3;UBERON:0006242,1.58e-08,3;UBERON:0000478,5.37e-08,24;UBERON:0007029,4.18e-07,1;UBERON:0001764,5.57e-07,1;UBERON:0001825,5.57e-07,1;UBERON:0002146,6.24e-07,1;UBERON:0005623,6.24e-07,1;UBERON:0004913,6.60e-07,1;UBERON:0003703,6.60e-07,1;UBERON:0001174,6.60e-07,1;UBERON:0004914,6.60e-07,1;UBERON:0001301,9.79e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.655324116390517,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.0945348171640679,0,0.263504357079378,0.458426764241994,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.545492241181669,0,0,0,0.232387885739037,0.518305275076852,0,0,0,1.28648187638577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0.329250856225877,0,0.301586917234893,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87467667973554,1.51183915378974,0.141775097242386,0.179117045405697,0.290633938513962,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.24378600024763,1.66435439510497,5.44302527993425,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0.184161977871793,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.384380134730212,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,2.45040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.6785135102055,0,0,0,0,18.6220698095398,0.593929361665277,15.3580351049616,0,0,0,0,0,2.78947183551498,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,1.99613798001194,0.260427761085233,0.262379999988587,0.724999575434793,1.70690172428249,0.762760950878299,0,0,0,0,0,0,0,0,0.295547618953547,0,0.10893846351899,0.697118721393016,0.538651809526579,0,0,0,0,4.46601623624687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,0.353830258013357,0,0,0,0,0.269604531922708,0,0.234264445725339,0,1.56531695145672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881931576729399,0.783532859223623,1.92199335066233,0,0,0,0,0.678923115418936,0,0.225980740780532,0,0,0,2.34661659281764,0.240476460754601,10.0322907527496,0.19980960958213,2.3054466744657,0,0,1.1524383839052,0,1.88555227693436,0,0,0,0,0,0.136905378891993,0,0,0,0.837847203816763,2.97908551215189,0,0.599037001496973,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0.275078873194468,0,0.2249738915515,0,0.303747783290123,0.670869375198532,0,0.0524545881349981,0.105600336519406,0,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0.92562821219883,0,9.86741031243341,0.640724475406168,0.314408610199332,0,0,0,0,8.29843635101236,0,0,0,0,3.29813602125492,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=59352 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19719 | |||
|TSSclassifier=S | |||
|UniProt=Q9HBX8 | |||
|association_with_transcript=-65bp_to_ENST00000439764,NM_001017404,uc001gxw.2_5end | |||
|description=CAGE_peak_3_at_LGR6_5end | |||
|id=chr1:202183200..202183217,+ | |||
|ontology_enrichment_celltype=CL:0000066!8.21e-08!254 | |||
|ontology_enrichment_celltype_v019=CL:0002577;2.17e-17;3!CL:0000349;2.89e-10;19!CL:0002178;2.04e-08;3!CL:0002166;6.05e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,2.12e-17,3;CL:0000349,2.89e-10,19;CL:0002178,2.28e-08,3;CL:0002166,5.07e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0006242;3.31e-07;1 | |||
|ontology_enrichment_disease=DOID:305!5.60e-10!106;DOID:299!9.04e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:299;1.73e-07;25!DOID:0050619;5.41e-07;1!DOID:1357;5.41e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:299,1.67e-07,25;DOID:305,3.44e-07,106;DOID:0050619,5.57e-07,1;DOID:1357,5.57e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!6.54e-11!115;UBERON:0005631!1.87e-10!14;UBERON:0000158!1.87e-10!14;UBERON:0004119!1.46e-09!169;UBERON:0000925!1.46e-09!169;UBERON:0006595!1.46e-09!169;UBERON:0000062!9.72e-08!511;UBERON:0001987!3.40e-07!4;UBERON:0004340!3.40e-07!4;UBERON:0003100!3.59e-07!41;UBERON:0001007!9.51e-07!155;UBERON:0001555!9.51e-07!155;UBERON:0007026!9.51e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0001987;3.56e-13;4!UBERON:0002110;1.49e-08;3!UBERON:0000478;5.37e-08;24!UBERON:0002294;8.49e-08;7!UBERON:0001173;8.49e-08;7!UBERON:0007029;4.55e-07;1!UBERON:0001764;5.41e-07;1!UBERON:0001825;5.41e-07;1!UBERON:0002146;7.18e-07;1!UBERON:0004913;7.18e-07;1!UBERON:0003703;7.18e-07;1!UBERON:0005623;7.18e-07;1!UBERON:0001174;7.18e-07;1!UBERON:0004914;7.18e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.77e-14,14;UBERON:0000158,3.77e-14,14;UBERON:0001987,3.49e-13,4;UBERON:0004340,3.49e-13,4;UBERON:0003124,4.64e-13,7;UBERON:0002110,1.58e-08,3;UBERON:0006242,1.58e-08,3;UBERON:0000478,5.37e-08,24;UBERON:0007029,4.18e-07,1;UBERON:0001764,5.57e-07,1;UBERON:0001825,5.57e-07,1;UBERON:0002146,6.24e-07,1;UBERON:0005623,6.24e-07,1;UBERON:0004913,6.60e-07,1;UBERON:0003703,6.60e-07,1;UBERON:0001174,6.60e-07,1;UBERON:0004914,6.60e-07,1;UBERON:0001301,9.79e-07,1 | |||
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|short_description=p3@LGR6 | |||
}} |
Revision as of 02:49, 12 September 2013
Short description: | p3@LGR6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_LGR6_5end |
Coexpression cluster: | NA |
Association with transcript: | -65bp_to_ENST00000439764, NM_001017404, uc001gxw.2_5end |
EntrezGene: | LGR6 |
HGNC: | 19719 |
UniProt: | Q9HBX8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 2.12e-17 | 3 |
extraembryonic cell | 2.89e-10 | 19 |
epithelial cell of stomach | 2.28e-08 | 3 |
epithelial cell of Malassez | 5.07e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.77e-14 | 14 |
membranous layer | 3.77e-14 | 14 |
placenta | 3.49e-13 | 4 |
allantois | 3.49e-13 | 4 |
chorion | 4.64e-13 | 7 |
gallbladder | 1.58e-08 | 3 |
gall bladder primordium | 1.58e-08 | 3 |
extraembryonic structure | 5.37e-08 | 24 |
surface | 4.18e-07 | 1 |
maxillary sinus | 5.57e-07 | 1 |
paranasal sinus | 5.57e-07 | 1 |
pulmonary valve | 6.24e-07 | 1 |
semi-lunar valve | 6.24e-07 | 1 |
hepatopancreatic ampulla | 6.60e-07 | 1 |
extrahepatic bile duct | 6.60e-07 | 1 |
common bile duct | 6.60e-07 | 1 |
duodenal papilla | 6.60e-07 | 1 |
epididymis | 9.79e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 1.67e-07 | 25 |
carcinoma | 3.44e-07 | 106 |
paranasal sinus cancer | 5.57e-07 | 1 |
maxillary sinus cancer | 5.57e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.