FFCP PHASE1:Hg19::chr2:189873740..189873791,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1281|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=2201|TSSclassifier=S|UniProt=P02461,Q6LBY7|association_with_transcript=27bp_to_X01742_5end|coexpression_cluster_id=C292|description=CAGE_peak_3_at_COL3A1_5end|id=chr2:189873740..189873791,+|ontology_enrichment_celltype=CL:0000055!1.12e-31!180;CL:0000187!1.05e-19!54;CL:0000057!1.08e-19!75;CL:0000680!2.09e-19!57;CL:0000056!2.09e-19!57;CL:0000355!2.09e-19!57;CL:0000183!1.98e-18!59;CL:0000393!8.01e-16!60;CL:0000211!8.01e-16!60;CL:0000192!9.84e-15!42;CL:0000514!9.84e-15!42;CL:0000048!1.05e-10!430;CL:0000359!6.13e-10!32;CL:0000723!7.41e-10!436;CL:0000034!2.83e-09!444;CL:0002334!6.65e-08!12;CL:0002494!1.63e-07!16;CL:0002620!2.92e-07!23;CL:0000499!4.04e-07!27;CL:0000136!6.10e-07!15|ontology_enrichment_celltype_v019=CL:0000134;4.30e-13;55!CL:0000187;7.53e-13;55!CL:0000723;2.01e-11;61!CL:0000192;2.05e-11;43!CL:0000349;4.03e-11;19!CL:0000048;5.15e-11;58!CL:0000393;6.03e-10;61!CL:0000211;6.03e-10;61!CL:0002334;1.13e-09;12!CL:0000359;1.65e-09;32!CL:0002494;2.99e-08;16!CL:0000034;4.05e-08;69!CL:0002320;4.99e-07;188!CL:0000499;5.49e-07;28|ontology_enrichment_celltype_v019_2=CL:0000187,7.65e-23,55;CL:0000680,7.40e-22,58;CL:0000056,7.40e-22,58;CL:0000355,7.40e-22,58;CL:0000393,4.73e-19,61;CL:0000211,4.73e-19,61;CL:0000048,6.25e-17,427;CL:0000192,1.28e-16,43;CL:0000514,1.28e-16,43;CL:0000057,2.24e-16,76;CL:0000723,4.56e-16,433;CL:0000034,5.80e-15,441;CL:0000349,4.13e-11,19;CL:0000359,3.61e-10,32;CL:0002334,1.31e-09,12;CL:0002494,2.54e-08,16;CL:0002320,3.51e-07,361;CL:0000222,4.27e-07,121;CL:0000136,4.58e-07,15;CL:0000499,5.39e-07,28|ontology_enrichment_development_v019=CL:0000355;6.84e-12;58!CL:0000514;2.05e-11;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;4.45e-07;14|ontology_enrichment_disease_v019_2=DOID:2394,4.36e-07,14|ontology_enrichment_uberon=UBERON:0004290!1.77e-20!70;UBERON:0002385!1.83e-20!63;UBERON:0001015!1.83e-20!63;UBERON:0000383!1.83e-20!63;UBERON:0001134!3.44e-20!61;UBERON:0002036!3.44e-20!61;UBERON:0003082!3.44e-20!61;UBERON:0000914!4.26e-20!83;UBERON:0002329!4.26e-20!83;UBERON:0003077!4.26e-20!83;UBERON:0003059!4.26e-20!83;UBERON:0007282!4.26e-20!83;UBERON:0009618!4.26e-20!83;UBERON:0007285!4.26e-20!83;UBERON:0000486!5.55e-16!82;UBERON:0005256!4.19e-12!143;UBERON:0004872!1.31e-10!84;UBERON:0000478!2.53e-09!24;UBERON:0002100!1.24e-08!216;UBERON:0000948!4.99e-08!24;UBERON:0005498!4.99e-08!24;UBERON:0004140!4.99e-08!24;UBERON:0009881!4.99e-08!24;UBERON:0004141!4.99e-08!24;UBERON:0003084!4.99e-08!24;UBERON:0007005!4.99e-08!24;UBERON:0004139!4.99e-08!24;UBERON:0004291!4.99e-08!24;UBERON:0000490!6.50e-08!138;UBERON:0007100!1.15e-07!27;UBERON:0001013!2.13e-07!14;UBERON:0005631!2.65e-07!14;UBERON:0000158!2.65e-07!14;UBERON:0003104!4.00e-07!238;UBERON:0009142!4.00e-07!238;UBERON:0004923!6.03e-07!57|ontology_enrichment_uberon_v019=UBERON:0000478;4.18e-10;24!UBERON:0001013;2.28e-08;14!UBERON:0002385;2.29e-07;31!UBERON:0001015;2.29e-07;31!UBERON:0000383;2.29e-07;31!UBERON:0003104;3.21e-07;7!UBERON:0009142;3.21e-07;7!UBERON:0003688;3.75e-07;6!UBERON:0002358;3.75e-07;6!UBERON:0003684;3.75e-07;6!UBERON:0001178;3.75e-07;6!UBERON:0004457;4.81e-07;9!UBERON:0000042;4.81e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0001134,2.18e-22,62;UBERON:0002036,2.18e-22,62;UBERON:0003082,2.18e-22,62;UBERON:0002385,3.66e-21,64;UBERON:0001015,3.66e-21,64;UBERON:0000383,3.66e-21,64;UBERON:0007524,7.62e-20,73;UBERON:0002329,1.21e-19,71;UBERON:0003059,1.21e-19,71;UBERON:0007282,1.21e-19,71;UBERON:0004290,1.21e-19,71;UBERON:0009618,1.21e-19,71;UBERON:0003077,3.89e-19,72;UBERON:0007285,3.89e-19,72;UBERON:0007503,2.17e-16,78;UBERON:0000486,3.56e-16,83;UBERON:0003104,8.99e-14,160;UBERON:0009142,8.99e-14,160;UBERON:0005256,3.78e-13,122;UBERON:0000926,6.94e-11,315;UBERON:0004120,6.94e-11,315;UBERON:0006603,6.94e-11,315;UBERON:0000478,4.35e-10,24;UBERON:0004872,6.85e-09,83;UBERON:0001013,2.42e-08,14;UBERON:0000490,4.08e-08,148;UBERON:0000948,7.18e-08,24;UBERON:0005498,7.18e-08,24;UBERON:0004140,7.18e-08,24;UBERON:0009881,7.18e-08,24;UBERON:0004141,7.18e-08,24;UBERON:0003084,7.18e-08,24;UBERON:0007005,7.18e-08,24;UBERON:0004139,7.18e-08,24;UBERON:0004291,7.18e-08,24;UBERON:0002384,1.45e-07,371;UBERON:0002100,1.76e-07,199;UBERON:0003688,3.96e-07,6;UBERON:0002358,3.96e-07,6;UBERON:0003684,3.96e-07,6;UBERON:0001178,3.96e-07,6;UBERON:0005631,6.54e-07,14;UBERON:0000158,6.54e-07,14|phase1_expression=10.3556676184217,26.9766660102639,12.6858963686374,25.0183245882826,22.3480547213644,7.85104671690332,15.1979926900986,1.26343974685366,3.13422753839806,0,0,2.18441372130172,6.06664049925443,4.57935505952172,4.97096063591874,1.34465029290355,1.80808358407193,2.19093027116212,0.487932798790507,0,0,0.626909442956176,0,0,0.251085279189606,0,0,0,0,0,0.77408061658038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1281 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2201 | |||
|TSSclassifier=S | |||
|UniProt=P02461,Q6LBY7 | |||
|association_with_transcript=27bp_to_X01742_5end | |||
|coexpression_cluster_id=C292 | |||
|description=CAGE_peak_3_at_COL3A1_5end | |||
|id=chr2:189873740..189873791,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.12e-31!180;CL:0000187!1.05e-19!54;CL:0000057!1.08e-19!75;CL:0000680!2.09e-19!57;CL:0000056!2.09e-19!57;CL:0000355!2.09e-19!57;CL:0000183!1.98e-18!59;CL:0000393!8.01e-16!60;CL:0000211!8.01e-16!60;CL:0000192!9.84e-15!42;CL:0000514!9.84e-15!42;CL:0000048!1.05e-10!430;CL:0000359!6.13e-10!32;CL:0000723!7.41e-10!436;CL:0000034!2.83e-09!444;CL:0002334!6.65e-08!12;CL:0002494!1.63e-07!16;CL:0002620!2.92e-07!23;CL:0000499!4.04e-07!27;CL:0000136!6.10e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0000134;4.30e-13;55!CL:0000187;7.53e-13;55!CL:0000723;2.01e-11;61!CL:0000192;2.05e-11;43!CL:0000349;4.03e-11;19!CL:0000048;5.15e-11;58!CL:0000393;6.03e-10;61!CL:0000211;6.03e-10;61!CL:0002334;1.13e-09;12!CL:0000359;1.65e-09;32!CL:0002494;2.99e-08;16!CL:0000034;4.05e-08;69!CL:0002320;4.99e-07;188!CL:0000499;5.49e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,7.65e-23,55;CL:0000680,7.40e-22,58;CL:0000056,7.40e-22,58;CL:0000355,7.40e-22,58;CL:0000393,4.73e-19,61;CL:0000211,4.73e-19,61;CL:0000048,6.25e-17,427;CL:0000192,1.28e-16,43;CL:0000514,1.28e-16,43;CL:0000057,2.24e-16,76;CL:0000723,4.56e-16,433;CL:0000034,5.80e-15,441;CL:0000349,4.13e-11,19;CL:0000359,3.61e-10,32;CL:0002334,1.31e-09,12;CL:0002494,2.54e-08,16;CL:0002320,3.51e-07,361;CL:0000222,4.27e-07,121;CL:0000136,4.58e-07,15;CL:0000499,5.39e-07,28 | |||
|ontology_enrichment_development_v019=CL:0000355;6.84e-12;58!CL:0000514;2.05e-11;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;4.45e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.36e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004290!1.77e-20!70;UBERON:0002385!1.83e-20!63;UBERON:0001015!1.83e-20!63;UBERON:0000383!1.83e-20!63;UBERON:0001134!3.44e-20!61;UBERON:0002036!3.44e-20!61;UBERON:0003082!3.44e-20!61;UBERON:0000914!4.26e-20!83;UBERON:0002329!4.26e-20!83;UBERON:0003077!4.26e-20!83;UBERON:0003059!4.26e-20!83;UBERON:0007282!4.26e-20!83;UBERON:0009618!4.26e-20!83;UBERON:0007285!4.26e-20!83;UBERON:0000486!5.55e-16!82;UBERON:0005256!4.19e-12!143;UBERON:0004872!1.31e-10!84;UBERON:0000478!2.53e-09!24;UBERON:0002100!1.24e-08!216;UBERON:0000948!4.99e-08!24;UBERON:0005498!4.99e-08!24;UBERON:0004140!4.99e-08!24;UBERON:0009881!4.99e-08!24;UBERON:0004141!4.99e-08!24;UBERON:0003084!4.99e-08!24;UBERON:0007005!4.99e-08!24;UBERON:0004139!4.99e-08!24;UBERON:0004291!4.99e-08!24;UBERON:0000490!6.50e-08!138;UBERON:0007100!1.15e-07!27;UBERON:0001013!2.13e-07!14;UBERON:0005631!2.65e-07!14;UBERON:0000158!2.65e-07!14;UBERON:0003104!4.00e-07!238;UBERON:0009142!4.00e-07!238;UBERON:0004923!6.03e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;4.18e-10;24!UBERON:0001013;2.28e-08;14!UBERON:0002385;2.29e-07;31!UBERON:0001015;2.29e-07;31!UBERON:0000383;2.29e-07;31!UBERON:0003104;3.21e-07;7!UBERON:0009142;3.21e-07;7!UBERON:0003688;3.75e-07;6!UBERON:0002358;3.75e-07;6!UBERON:0003684;3.75e-07;6!UBERON:0001178;3.75e-07;6!UBERON:0004457;4.81e-07;9!UBERON:0000042;4.81e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,2.18e-22,62;UBERON:0002036,2.18e-22,62;UBERON:0003082,2.18e-22,62;UBERON:0002385,3.66e-21,64;UBERON:0001015,3.66e-21,64;UBERON:0000383,3.66e-21,64;UBERON:0007524,7.62e-20,73;UBERON:0002329,1.21e-19,71;UBERON:0003059,1.21e-19,71;UBERON:0007282,1.21e-19,71;UBERON:0004290,1.21e-19,71;UBERON:0009618,1.21e-19,71;UBERON:0003077,3.89e-19,72;UBERON:0007285,3.89e-19,72;UBERON:0007503,2.17e-16,78;UBERON:0000486,3.56e-16,83;UBERON:0003104,8.99e-14,160;UBERON:0009142,8.99e-14,160;UBERON:0005256,3.78e-13,122;UBERON:0000926,6.94e-11,315;UBERON:0004120,6.94e-11,315;UBERON:0006603,6.94e-11,315;UBERON:0000478,4.35e-10,24;UBERON:0004872,6.85e-09,83;UBERON:0001013,2.42e-08,14;UBERON:0000490,4.08e-08,148;UBERON:0000948,7.18e-08,24;UBERON:0005498,7.18e-08,24;UBERON:0004140,7.18e-08,24;UBERON:0009881,7.18e-08,24;UBERON:0004141,7.18e-08,24;UBERON:0003084,7.18e-08,24;UBERON:0007005,7.18e-08,24;UBERON:0004139,7.18e-08,24;UBERON:0004291,7.18e-08,24;UBERON:0002384,1.45e-07,371;UBERON:0002100,1.76e-07,199;UBERON:0003688,3.96e-07,6;UBERON:0002358,3.96e-07,6;UBERON:0003684,3.96e-07,6;UBERON:0001178,3.96e-07,6;UBERON:0005631,6.54e-07,14;UBERON:0000158,6.54e-07,14 | |||
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| |||
|short_description=p3@COL3A1 | |||
}} |
Revision as of 15:38, 12 September 2013
Short description: | p3@COL3A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_COL3A1_5end |
Coexpression cluster: | C292_Mesenchymal_skin_umbilical_Adipocyte_mesenchymal_Chondrocyte_skeletal |
Association with transcript: | 27bp_to_X01742_5end |
EntrezGene: | COL3A1 |
HGNC: | 2201 |
UniProt: | P02461Q6LBY7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 7.65e-23 | 55 |
muscle precursor cell | 7.40e-22 | 58 |
myoblast | 7.40e-22 | 58 |
multi-potent skeletal muscle stem cell | 7.40e-22 | 58 |
electrically responsive cell | 4.73e-19 | 61 |
electrically active cell | 4.73e-19 | 61 |
multi fate stem cell | 6.25e-17 | 427 |
smooth muscle cell | 1.28e-16 | 43 |
smooth muscle myoblast | 1.28e-16 | 43 |
fibroblast | 2.24e-16 | 76 |
somatic stem cell | 4.56e-16 | 433 |
stem cell | 5.80e-15 | 441 |
extraembryonic cell | 4.13e-11 | 19 |
vascular associated smooth muscle cell | 3.61e-10 | 32 |
preadipocyte | 1.31e-09 | 12 |
cardiocyte | 2.54e-08 | 16 |
connective tissue cell | 3.51e-07 | 361 |
mesodermal cell | 4.27e-07 | 121 |
fat cell | 4.58e-07 | 15 |
stromal cell | 5.39e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.36e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.