FFCP PHASE1:Hg19::chr2:238305397..238305434,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1293|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2213|TSSclassifier=S|UniProt=|association_with_transcript=25bp_to_BC172233_5end|coexpression_cluster_id=C332|description=CAGE_peak_10_at_COL6A3_5end|id=chr2:238305397..238305434,-|ontology_enrichment_celltype=CL:0000055!7.55e-40!180;CL:0000057!4.74e-27!75;CL:0000680!2.05e-18!57;CL:0000056!2.05e-18!57;CL:0000355!2.05e-18!57;CL:0000187!2.78e-18!54;CL:0000183!8.98e-18!59;CL:0000048!1.52e-17!430;CL:0000723!1.47e-16!436;CL:0000393!1.38e-15!60;CL:0000211!1.38e-15!60;CL:0000034!2.65e-15!444;CL:0002620!2.02e-14!23;CL:0000192!2.70e-11!42;CL:0000514!2.70e-11!42;CL:0002320!8.72e-09!365;CL:0000188!4.76e-08!9;CL:0002371!1.19e-07!591;CL:0000359!3.23e-07!32;CL:0000134!6.37e-07!358|ontology_enrichment_celltype_v019=CL:0002620;1.50e-16;23!CL:0000188;2.46e-12;9!CL:0000057;4.76e-09;73!CL:0002320;8.06e-08;188!CL:0000134;1.70e-07;55!CL:0000723;4.67e-07;61|ontology_enrichment_celltype_v019_2=CL:0000057,4.45e-21,76;CL:0000048,1.40e-17,427;CL:0000723,6.49e-17,433;CL:0000034,4.67e-16,441;CL:0002620,5.08e-16,23;CL:0002320,6.95e-13,361;CL:0000188,4.79e-12,9;CL:0000134,2.41e-10,354;CL:0000187,1.09e-09,55;CL:0000680,7.65e-09,58;CL:0000056,7.65e-09,58;CL:0000355,7.65e-09,58;CL:0000393,4.35e-08,61;CL:0000211,4.35e-08,61;CL:0000219,5.92e-08,386;CL:0000136,5.43e-07,15|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:17;2.28e-08;5!DOID:450;2.28e-08;5!DOID:66;2.28e-08;5!DOID:423;2.28e-08;5!DOID:0080000;2.28e-08;5!DOID:11722;2.28e-08;5|ontology_enrichment_disease_v019_2=DOID:17,2.50e-08,5;DOID:450,2.50e-08,5;DOID:66,2.50e-08,5;DOID:423,2.50e-08,5;DOID:0080000,2.50e-08,5;DOID:11722,2.50e-08,5|ontology_enrichment_uberon=UBERON:0000914!1.86e-24!83;UBERON:0002329!1.86e-24!83;UBERON:0003077!1.86e-24!83;UBERON:0003059!1.86e-24!83;UBERON:0007282!1.86e-24!83;UBERON:0009618!1.86e-24!83;UBERON:0007285!1.86e-24!83;UBERON:0004290!5.98e-22!70;UBERON:0002385!1.10e-18!63;UBERON:0001015!1.10e-18!63;UBERON:0000383!1.10e-18!63;UBERON:0001134!2.56e-18!61;UBERON:0002036!2.56e-18!61;UBERON:0003082!2.56e-18!61;UBERON:0000486!8.87e-18!82;UBERON:0005256!5.37e-14!143;UBERON:0003102!1.11e-13!95;UBERON:0002199!2.35e-12!45;UBERON:0002416!2.35e-12!45;UBERON:0002097!1.50e-09!40;UBERON:0002384!2.45e-09!375;UBERON:0002100!2.75e-09!216;UBERON:0000475!1.20e-07!365;UBERON:0004872!2.22e-07!84|ontology_enrichment_uberon_v019=UBERON:0002199;3.93e-12;46!UBERON:0002416;3.93e-12;46!UBERON:0002097;2.22e-10;41!UBERON:0003102;6.09e-10;50!UBERON:0001134;7.35e-09;16!UBERON:0002036;7.35e-09;16!UBERON:0002384;9.17e-09;198!UBERON:0002385;4.24e-08;31!UBERON:0001015;4.24e-08;31!UBERON:0000383;4.24e-08;31|ontology_enrichment_uberon_v019_2=UBERON:0002199,4.31e-17,46;UBERON:0002416,4.31e-17,46;UBERON:0003102,6.89e-15,99;UBERON:0002097,9.55e-14,41;UBERON:0002384,7.06e-13,371;UBERON:0007524,1.01e-12,73;UBERON:0002329,2.14e-12,71;UBERON:0003059,2.14e-12,71;UBERON:0007282,2.14e-12,71;UBERON:0004290,2.14e-12,71;UBERON:0009618,2.14e-12,71;UBERON:0003077,4.27e-12,72;UBERON:0007285,4.27e-12,72;UBERON:0000486,6.52e-11,83;UBERON:0007503,1.78e-10,78;UBERON:0001134,1.81e-09,62;UBERON:0002036,1.81e-09,62;UBERON:0003082,1.81e-09,62;UBERON:0002385,5.98e-09,64;UBERON:0001015,5.98e-09,64;UBERON:0000383,5.98e-09,64;UBERON:0003104,3.61e-07,160;UBERON:0009142,3.61e-07,160;UBERON:0005256,6.31e-07,122|phase1_expression=1.2717486548939,3.42560838225573,0.422863212287913,2.00146596706261,2.68176656656373,0,5.06599756336621,1.89515962028049,1.82829939739887,0,0,0,0,1.23766352960047,2.98257638155124,2.6893005858071,0.602694528023977,0.730310090387373,0.487932798790507,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0.670700859703636,0.12786256184353,1.44575660953827,2.00535164254356,0.724232594804119,4.7717156823066,0.973269740605272,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,1.49091585508596,1.77282716330412,0.926864265692532,9.17877186396204,0.354668382198357,0,0,0.74000264525148,0.311211035399766,0.808264032418128,1.30769522490767,1.51357427644931,1.15235184896,0.234321431833797,2.49728061464256,0.570471821544449,1.34503812496621,1.05691048779388,0.809364721840658,1.12360645361799,1.42907919878425,0.61417158655884,3.82305390350332,3.56400857184616,2.71993622206413,0.910161361938026,0,1.5150250255866,0.125118519871964,1.38532057742091,0.877955241761676,2.45190236639216,1.35214253015937,0.226864366320042,3.94657198515496,2.56268866582281,2.33125091275518,3.00091096084402,2.26715564324566,3.09168648054755,1.11670113798954,4.55696097051419,1.65642908774038,2.01947019395292,1.47279837827679,1.13152239773168,4.9701342952326,0.705264687593482,0.847802961552438,0,0,0,0,0,0,0,0,0,0,1.2864818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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1293 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2213 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=25bp_to_BC172233_5end | |||
|coexpression_cluster_id=C332 | |||
|description=CAGE_peak_10_at_COL6A3_5end | |||
|id=chr2:238305397..238305434,- | |||
|ontology_enrichment_celltype=CL:0000055!7.55e-40!180;CL:0000057!4.74e-27!75;CL:0000680!2.05e-18!57;CL:0000056!2.05e-18!57;CL:0000355!2.05e-18!57;CL:0000187!2.78e-18!54;CL:0000183!8.98e-18!59;CL:0000048!1.52e-17!430;CL:0000723!1.47e-16!436;CL:0000393!1.38e-15!60;CL:0000211!1.38e-15!60;CL:0000034!2.65e-15!444;CL:0002620!2.02e-14!23;CL:0000192!2.70e-11!42;CL:0000514!2.70e-11!42;CL:0002320!8.72e-09!365;CL:0000188!4.76e-08!9;CL:0002371!1.19e-07!591;CL:0000359!3.23e-07!32;CL:0000134!6.37e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.50e-16;23!CL:0000188;2.46e-12;9!CL:0000057;4.76e-09;73!CL:0002320;8.06e-08;188!CL:0000134;1.70e-07;55!CL:0000723;4.67e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.45e-21,76;CL:0000048,1.40e-17,427;CL:0000723,6.49e-17,433;CL:0000034,4.67e-16,441;CL:0002620,5.08e-16,23;CL:0002320,6.95e-13,361;CL:0000188,4.79e-12,9;CL:0000134,2.41e-10,354;CL:0000187,1.09e-09,55;CL:0000680,7.65e-09,58;CL:0000056,7.65e-09,58;CL:0000355,7.65e-09,58;CL:0000393,4.35e-08,61;CL:0000211,4.35e-08,61;CL:0000219,5.92e-08,386;CL:0000136,5.43e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;2.28e-08;5!DOID:450;2.28e-08;5!DOID:66;2.28e-08;5!DOID:423;2.28e-08;5!DOID:0080000;2.28e-08;5!DOID:11722;2.28e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.50e-08,5;DOID:450,2.50e-08,5;DOID:66,2.50e-08,5;DOID:423,2.50e-08,5;DOID:0080000,2.50e-08,5;DOID:11722,2.50e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.86e-24!83;UBERON:0002329!1.86e-24!83;UBERON:0003077!1.86e-24!83;UBERON:0003059!1.86e-24!83;UBERON:0007282!1.86e-24!83;UBERON:0009618!1.86e-24!83;UBERON:0007285!1.86e-24!83;UBERON:0004290!5.98e-22!70;UBERON:0002385!1.10e-18!63;UBERON:0001015!1.10e-18!63;UBERON:0000383!1.10e-18!63;UBERON:0001134!2.56e-18!61;UBERON:0002036!2.56e-18!61;UBERON:0003082!2.56e-18!61;UBERON:0000486!8.87e-18!82;UBERON:0005256!5.37e-14!143;UBERON:0003102!1.11e-13!95;UBERON:0002199!2.35e-12!45;UBERON:0002416!2.35e-12!45;UBERON:0002097!1.50e-09!40;UBERON:0002384!2.45e-09!375;UBERON:0002100!2.75e-09!216;UBERON:0000475!1.20e-07!365;UBERON:0004872!2.22e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0002199;3.93e-12;46!UBERON:0002416;3.93e-12;46!UBERON:0002097;2.22e-10;41!UBERON:0003102;6.09e-10;50!UBERON:0001134;7.35e-09;16!UBERON:0002036;7.35e-09;16!UBERON:0002384;9.17e-09;198!UBERON:0002385;4.24e-08;31!UBERON:0001015;4.24e-08;31!UBERON:0000383;4.24e-08;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,4.31e-17,46;UBERON:0002416,4.31e-17,46;UBERON:0003102,6.89e-15,99;UBERON:0002097,9.55e-14,41;UBERON:0002384,7.06e-13,371;UBERON:0007524,1.01e-12,73;UBERON:0002329,2.14e-12,71;UBERON:0003059,2.14e-12,71;UBERON:0007282,2.14e-12,71;UBERON:0004290,2.14e-12,71;UBERON:0009618,2.14e-12,71;UBERON:0003077,4.27e-12,72;UBERON:0007285,4.27e-12,72;UBERON:0000486,6.52e-11,83;UBERON:0007503,1.78e-10,78;UBERON:0001134,1.81e-09,62;UBERON:0002036,1.81e-09,62;UBERON:0003082,1.81e-09,62;UBERON:0002385,5.98e-09,64;UBERON:0001015,5.98e-09,64;UBERON:0000383,5.98e-09,64;UBERON:0003104,3.61e-07,160;UBERON:0009142,3.61e-07,160;UBERON:0005256,6.31e-07,122 | |||
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| |||
|short_description=p10@COL6A3 | |||
}} |
Revision as of 17:37, 12 September 2013
Short description: | p10@COL6A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_COL6A3_5end |
Coexpression cluster: | C332_Fibroblast_Smooth_Mesenchymal_mesenchymal_Chondrocyte_Skeletal_Pericytes |
Association with transcript: | 25bp_to_BC172233_5end |
EntrezGene: | COL6A3 |
HGNC: | 2213 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.45e-21 | 76 |
multi fate stem cell | 1.40e-17 | 427 |
somatic stem cell | 6.49e-17 | 433 |
stem cell | 4.67e-16 | 441 |
skin fibroblast | 5.08e-16 | 23 |
connective tissue cell | 6.95e-13 | 361 |
cell of skeletal muscle | 4.79e-12 | 9 |
mesenchymal cell | 2.41e-10 | 354 |
muscle cell | 1.09e-09 | 55 |
muscle precursor cell | 7.65e-09 | 58 |
myoblast | 7.65e-09 | 58 |
multi-potent skeletal muscle stem cell | 7.65e-09 | 58 |
electrically responsive cell | 4.35e-08 | 61 |
electrically active cell | 4.35e-08 | 61 |
motile cell | 5.92e-08 | 386 |
fat cell | 5.43e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
integument | 4.31e-17 | 46 |
integumental system | 4.31e-17 | 46 |
surface structure | 6.89e-15 | 99 |
skin of body | 9.55e-14 | 41 |
connective tissue | 7.06e-13 | 371 |
dense mesenchyme tissue | 1.01e-12 | 73 |
somite | 2.14e-12 | 71 |
presomitic mesoderm | 2.14e-12 | 71 |
presumptive segmental plate | 2.14e-12 | 71 |
dermomyotome | 2.14e-12 | 71 |
trunk paraxial mesoderm | 2.14e-12 | 71 |
paraxial mesoderm | 4.27e-12 | 72 |
presumptive paraxial mesoderm | 4.27e-12 | 72 |
multilaminar epithelium | 6.52e-11 | 83 |
epithelial vesicle | 1.78e-10 | 78 |
skeletal muscle tissue | 1.81e-09 | 62 |
striated muscle tissue | 1.81e-09 | 62 |
myotome | 1.81e-09 | 62 |
muscle tissue | 5.98e-09 | 64 |
musculature | 5.98e-09 | 64 |
musculature of body | 5.98e-09 | 64 |
mesenchyme | 3.61e-07 | 160 |
entire embryonic mesenchyme | 3.61e-07 | 160 |
trunk mesenchyme | 6.31e-07 | 122 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.50e-08 | 5 |
myotonic disease | 2.50e-08 | 5 |
muscle tissue disease | 2.50e-08 | 5 |
myopathy | 2.50e-08 | 5 |
muscular disease | 2.50e-08 | 5 |
myotonic dystrophy | 2.50e-08 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.