FFCP PHASE1:Hg19::chr3:145940083..145940098,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57088|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16497|TSSclassifier=S|UniProt=C9J3P9|association_with_transcript=59bp_to_ENST00000498625_5end|coexpression_cluster_id=C4290|description=CAGE_peak_6_at_PLSCR4_5end|id=chr3:145940083..145940098,-|ontology_enrichment_celltype=CL:0002139!5.73e-21!24;CL:0000115!5.86e-16!35;CL:0000071!1.35e-12!18;CL:0002546!1.35e-12!18;CL:0002078!1.56e-12!44;CL:0005020!6.69e-11!6;CL:0002138!6.69e-11!6;CL:0005022!6.69e-11!6;CL:0000213!3.01e-08!57;CL:0000215!3.01e-08!57;CL:1000413!5.44e-08!9|ontology_enrichment_celltype_v019=CL:0002138;3.87e-19;6!CL:0002139;1.18e-16;24!CL:0000182;2.56e-13;12!CL:0000115;6.59e-13;36!CL:0002078;2.04e-09;45!CL:0002144;8.66e-07;3|ontology_enrichment_celltype_v019_2=CL:0005020,3.24e-19,6;CL:0002138,3.24e-19,6;CL:0005022,3.24e-19,6;CL:0002139,8.48e-17,24;CL:0000115,2.45e-15,36;CL:0000182,1.91e-13,12;CL:0002078,9.15e-12,45;CL:0000213,1.41e-08,58;CL:0000215,1.41e-08,58;CL:0002144,8.80e-07,3|ontology_enrichment_development_v019=CL:0005022;3.87e-19;6!UBERON:0004161;3.14e-10;11!UBERON:0003104;6.07e-10;31!UBERON:0009497;1.32e-08;13|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!8.31e-34!115;UBERON:0004111!1.37e-18!241;UBERON:0000477!1.48e-17!286;UBERON:0000025!1.21e-16!194;UBERON:0001986!1.35e-12!18;UBERON:0004638!1.35e-12!18;UBERON:0004852!1.35e-12!18;UBERON:0000483!3.91e-12!309;UBERON:0000119!8.08e-12!312;UBERON:0001049!1.08e-09!57;UBERON:0005068!1.08e-09!57;UBERON:0006241!1.08e-09!57;UBERON:0007135!1.08e-09!57;UBERON:0000487!1.17e-09!22;UBERON:0002368!2.19e-09!35;UBERON:0003075!6.97e-09!86;UBERON:0007284!6.97e-09!86;UBERON:0000467!1.23e-08!625;UBERON:0002298!1.36e-08!8;UBERON:0000480!1.42e-08!626;UBERON:0000059!2.54e-08!11;UBERON:0002616!2.61e-08!59;UBERON:0002465!3.13e-08!10;UBERON:0002346!3.85e-08!90;UBERON:0000468!4.30e-08!659;UBERON:0006914!4.30e-08!25;UBERON:0003915!5.44e-08!9;UBERON:0004700!5.44e-08!9;UBERON:0001917!5.44e-08!9;UBERON:0004921!6.28e-08!129;UBERON:0004185!6.28e-08!129;UBERON:0000055!6.46e-08!69;UBERON:0001473!6.93e-08!8;UBERON:0004536!6.93e-08!8;UBERON:0006558!6.93e-08!8;UBERON:0005057!1.01e-07!26;UBERON:0003914!1.36e-07!118;UBERON:0002049!1.79e-07!79;UBERON:0007798!1.79e-07!79;UBERON:0002107!1.93e-07!19;UBERON:0006925!1.93e-07!19;UBERON:0008836!1.93e-07!19;UBERON:0000949!2.44e-07!45;UBERON:0009854!5.23e-07!23;UBERON:0000481!8.85e-07!347|ontology_enrichment_uberon_v019=UBERON:0002465;6.94e-16;10!UBERON:0002107;2.06e-14;19!UBERON:0006925;2.06e-14;19!UBERON:0001473;2.76e-14;8!UBERON:0004536;2.76e-14;8!UBERON:0006558;2.76e-14;8!UBERON:0002423;1.25e-10;25!UBERON:0002368;1.20e-08;33!UBERON:0000949;2.81e-08;43!UBERON:0002365;4.72e-08;31!UBERON:0002330;4.72e-08;31!UBERON:0001155;6.85e-08;9!UBERON:0010523;8.66e-07;3!UBERON:0001915;8.66e-07;3!UBERON:0001982;8.66e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0002465,4.77e-16,10;UBERON:0009854,1.18e-14,23;UBERON:0002107,1.61e-14,19;UBERON:0006925,1.61e-14,19;UBERON:0008836,1.61e-14,19;UBERON:0001473,2.42e-14,8;UBERON:0004536,2.42e-14,8;UBERON:0006558,2.42e-14,8;UBERON:0009856,9.00e-13,26;UBERON:0008835,2.36e-12,22;UBERON:0003894,2.36e-12,22;UBERON:0007499,1.04e-10,25;UBERON:0009497,1.04e-10,25;UBERON:0000015,1.04e-10,25;UBERON:0002423,1.04e-10,25;UBERON:0006235,1.04e-10,25;UBERON:0004161,1.04e-10,25;UBERON:0002368,4.78e-09,35;UBERON:0002365,2.24e-08,31;UBERON:0002330,2.24e-08,31;UBERON:0000949,2.69e-08,45;UBERON:0005172,5.06e-08,54;UBERON:0005173,5.06e-08,54;UBERON:0001155,8.65e-08,9;UBERON:0002417,5.24e-07,60;UBERON:0000916,5.24e-07,60;UBERON:0010523,8.80e-07,3;UBERON:0001915,8.80e-07,3;UBERON:0001982,8.80e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.71010852059789,0,0,0,0,0,0,0,0,0.596287222100115,0,0.694281003215189,0.56530794192401,1.25849830862972,0.825354125820202,0.208994966536811,0.516833518338658,1.42306505074684,2.34304428935269,1.20848795132744,0.760272105718513,2.92874469057803,1.47065232138347,0,1.3394959242612,0.44905874525234,0.675668882899933,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0.269421344139376,0.490385709340376,0.908144565869588,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,7.60530208930985,15.725235466842,7.08947888017685,0,0.245976877086227,0.171567810298526,0,0,0,0,0,0,0,0,0,9.23945265670872,5.55582615091933,22.0694816592134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57088 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16497 | |||
|TSSclassifier=S | |||
|UniProt=C9J3P9 | |||
|association_with_transcript=59bp_to_ENST00000498625_5end | |||
|coexpression_cluster_id=C4290 | |||
|description=CAGE_peak_6_at_PLSCR4_5end | |||
|id=chr3:145940083..145940098,- | |||
|ontology_enrichment_celltype=CL:0002139!5.73e-21!24;CL:0000115!5.86e-16!35;CL:0000071!1.35e-12!18;CL:0002546!1.35e-12!18;CL:0002078!1.56e-12!44;CL:0005020!6.69e-11!6;CL:0002138!6.69e-11!6;CL:0005022!6.69e-11!6;CL:0000213!3.01e-08!57;CL:0000215!3.01e-08!57;CL:1000413!5.44e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0002138;3.87e-19;6!CL:0002139;1.18e-16;24!CL:0000182;2.56e-13;12!CL:0000115;6.59e-13;36!CL:0002078;2.04e-09;45!CL:0002144;8.66e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,3.24e-19,6;CL:0002138,3.24e-19,6;CL:0005022,3.24e-19,6;CL:0002139,8.48e-17,24;CL:0000115,2.45e-15,36;CL:0000182,1.91e-13,12;CL:0002078,9.15e-12,45;CL:0000213,1.41e-08,58;CL:0000215,1.41e-08,58;CL:0002144,8.80e-07,3 | |||
|ontology_enrichment_development_v019=CL:0005022;3.87e-19;6!UBERON:0004161;3.14e-10;11!UBERON:0003104;6.07e-10;31!UBERON:0009497;1.32e-08;13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.31e-34!115;UBERON:0004111!1.37e-18!241;UBERON:0000477!1.48e-17!286;UBERON:0000025!1.21e-16!194;UBERON:0001986!1.35e-12!18;UBERON:0004638!1.35e-12!18;UBERON:0004852!1.35e-12!18;UBERON:0000483!3.91e-12!309;UBERON:0000119!8.08e-12!312;UBERON:0001049!1.08e-09!57;UBERON:0005068!1.08e-09!57;UBERON:0006241!1.08e-09!57;UBERON:0007135!1.08e-09!57;UBERON:0000487!1.17e-09!22;UBERON:0002368!2.19e-09!35;UBERON:0003075!6.97e-09!86;UBERON:0007284!6.97e-09!86;UBERON:0000467!1.23e-08!625;UBERON:0002298!1.36e-08!8;UBERON:0000480!1.42e-08!626;UBERON:0000059!2.54e-08!11;UBERON:0002616!2.61e-08!59;UBERON:0002465!3.13e-08!10;UBERON:0002346!3.85e-08!90;UBERON:0000468!4.30e-08!659;UBERON:0006914!4.30e-08!25;UBERON:0003915!5.44e-08!9;UBERON:0004700!5.44e-08!9;UBERON:0001917!5.44e-08!9;UBERON:0004921!6.28e-08!129;UBERON:0004185!6.28e-08!129;UBERON:0000055!6.46e-08!69;UBERON:0001473!6.93e-08!8;UBERON:0004536!6.93e-08!8;UBERON:0006558!6.93e-08!8;UBERON:0005057!1.01e-07!26;UBERON:0003914!1.36e-07!118;UBERON:0002049!1.79e-07!79;UBERON:0007798!1.79e-07!79;UBERON:0002107!1.93e-07!19;UBERON:0006925!1.93e-07!19;UBERON:0008836!1.93e-07!19;UBERON:0000949!2.44e-07!45;UBERON:0009854!5.23e-07!23;UBERON:0000481!8.85e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002465;6.94e-16;10!UBERON:0002107;2.06e-14;19!UBERON:0006925;2.06e-14;19!UBERON:0001473;2.76e-14;8!UBERON:0004536;2.76e-14;8!UBERON:0006558;2.76e-14;8!UBERON:0002423;1.25e-10;25!UBERON:0002368;1.20e-08;33!UBERON:0000949;2.81e-08;43!UBERON:0002365;4.72e-08;31!UBERON:0002330;4.72e-08;31!UBERON:0001155;6.85e-08;9!UBERON:0010523;8.66e-07;3!UBERON:0001915;8.66e-07;3!UBERON:0001982;8.66e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002465,4.77e-16,10;UBERON:0009854,1.18e-14,23;UBERON:0002107,1.61e-14,19;UBERON:0006925,1.61e-14,19;UBERON:0008836,1.61e-14,19;UBERON:0001473,2.42e-14,8;UBERON:0004536,2.42e-14,8;UBERON:0006558,2.42e-14,8;UBERON:0009856,9.00e-13,26;UBERON:0008835,2.36e-12,22;UBERON:0003894,2.36e-12,22;UBERON:0007499,1.04e-10,25;UBERON:0009497,1.04e-10,25;UBERON:0000015,1.04e-10,25;UBERON:0002423,1.04e-10,25;UBERON:0006235,1.04e-10,25;UBERON:0004161,1.04e-10,25;UBERON:0002368,4.78e-09,35;UBERON:0002365,2.24e-08,31;UBERON:0002330,2.24e-08,31;UBERON:0000949,2.69e-08,45;UBERON:0005172,5.06e-08,54;UBERON:0005173,5.06e-08,54;UBERON:0001155,8.65e-08,9;UBERON:0002417,5.24e-07,60;UBERON:0000916,5.24e-07,60;UBERON:0010523,8.80e-07,3;UBERON:0001915,8.80e-07,3;UBERON:0001982,8.80e-07,3 | |||
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|short_description=p6@PLSCR4 | |||
}} |
Revision as of 21:56, 12 September 2013
Short description: | p6@PLSCR4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_PLSCR4_5end |
Coexpression cluster: | C4290_Lymphatic_Hepatocyte_liver_adipose_breast_Renal_vagina |
Association with transcript: | 59bp_to_ENST00000498625_5end |
EntrezGene: | PLSCR4 |
HGNC: | 16497 |
UniProt: | C9J3P9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 3.24e-19 | 6 |
endothelial cell of lymphatic vessel | 3.24e-19 | 6 |
vascular lymphangioblast | 3.24e-19 | 6 |
endothelial cell of vascular tree | 8.48e-17 | 24 |
endothelial cell | 2.45e-15 | 36 |
hepatocyte | 1.91e-13 | 12 |
meso-epithelial cell | 9.15e-12 | 45 |
lining cell | 1.41e-08 | 58 |
barrier cell | 1.41e-08 | 58 |
capillary endothelial cell | 8.80e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
lymphoid system | 4.77e-16 | 10 |
digestive tract diverticulum | 1.18e-14 | 23 |
liver | 1.61e-14 | 19 |
digestive gland | 1.61e-14 | 19 |
liver bud | 1.61e-14 | 19 |
lymphatic vessel | 2.42e-14 | 8 |
lymph vasculature | 2.42e-14 | 8 |
lymphatic part of lymphoid system | 2.42e-14 | 8 |
sac | 9.00e-13 | 26 |
hepatic diverticulum | 2.36e-12 | 22 |
liver primordium | 2.36e-12 | 22 |
epithelial sac | 1.04e-10 | 25 |
epithelium of foregut-midgut junction | 1.04e-10 | 25 |
anatomical boundary | 1.04e-10 | 25 |
hepatobiliary system | 1.04e-10 | 25 |
foregut-midgut junction | 1.04e-10 | 25 |
septum transversum | 1.04e-10 | 25 |
endocrine gland | 4.78e-09 | 35 |
exocrine gland | 2.24e-08 | 31 |
exocrine system | 2.24e-08 | 31 |
endocrine system | 2.69e-08 | 45 |
abdomen element | 5.06e-08 | 54 |
abdominal segment element | 5.06e-08 | 54 |
colon | 8.65e-08 | 9 |
abdominal segment of trunk | 5.24e-07 | 60 |
abdomen | 5.24e-07 | 60 |
microcirculatory vessel | 8.80e-07 | 3 |
endothelium of capillary | 8.80e-07 | 3 |
capillary | 8.80e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.