FFCP PHASE1:Hg19::chr3:189590650..189590662,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C2735|description=CAGE_peak_at_chr3:189590650..189590662,+|id=chr3:189590650..189590662,+|ontology_enrichment_celltype=CL:0002076!9.83e-23!43;CL:0000223!5.06e-19!59;CL:0002251!1.06e-14!21;CL:0000066!7.00e-10!254;CL:0002159!7.63e-10!13;CL:0002368!1.93e-09!13;CL:0000622!1.45e-07!5;CL:0002621!3.97e-07!3;CL:0000076!6.42e-07!62|ontology_enrichment_celltype_v019=CL:0002076;4.47e-23;42!CL:0000622;2.86e-20;5!CL:0002251;9.30e-19;20!CL:0000154;6.27e-17;6!CL:0002159;8.59e-16;14!CL:0000317;7.59e-14;2!CL:1000448;7.59e-14;2!CL:0002308;7.59e-14;2!CL:0002140;7.59e-14;2!CL:0000362;1.12e-11;9!CL:0000150;2.41e-11;9!CL:0000240;2.62e-10;6!CL:0000311;2.62e-10;6!CL:0000079;2.62e-10;6!CL:0000237;2.62e-10;6!CL:0000076;7.70e-10;63!CL:0002231;1.29e-09;3!CL:0002623;4.17e-09;3!CL:0002368;4.33e-08;13!CL:0002336;7.75e-08;1!CL:0002261;7.75e-08;1!CL:0002170;7.75e-08;1!CL:0002077;1.30e-07;34!CL:0002252;1.91e-07;1!CL:0002327;3.17e-07;4|ontology_enrichment_celltype_v019_2=CL:0002076,1.37e-26,42;CL:0000622,4.28e-20,5;CL:0002251,9.56e-19,20;CL:0000223,1.75e-18,58;CL:0000076,7.41e-17,63;CL:0000154,8.75e-17,6;CL:0002159,9.32e-16,14;CL:0000066,1.16e-15,253;CL:0000317,5.88e-14,2;CL:1000448,5.88e-14,2;CL:0002308,5.88e-14,2;CL:0002140,5.88e-14,2;CL:0000362,1.25e-11,9;CL:0000150,3.00e-11,9;CL:0000240,3.38e-10,6;CL:0000311,3.38e-10,6;CL:0000079,3.38e-10,6;CL:0000237,3.38e-10,6;CL:0000036,3.38e-10,6;CL:0000357,3.38e-10,6;CL:0000114,3.38e-10,6;CL:0002231,1.04e-09,3;CL:0002623,6.84e-09,3;CL:0002077,3.35e-08,34;CL:0002368,4.42e-08,13;CL:0002336,7.76e-08,1;CL:0002261,7.76e-08,1;CL:0002170,7.76e-08,1;CL:0002252,2.17e-07,1;CL:0002327,3.60e-07,4;CL:0002321,9.54e-07,250|ontology_enrichment_development_v019=CL:0000223;3.23e-11;58!CL:0000357;2.62e-10;6!CL:0000114;2.62e-10;6|ontology_enrichment_disease=DOID:1749!3.68e-17!14;DOID:0060058!6.73e-08!10|ontology_enrichment_disease_v019=DOID:1749;1.75e-27;14!DOID:3151;7.75e-08;1!DOID:3149;7.75e-08;1|ontology_enrichment_disease_v019_2=DOID:1749,1.07e-27,14;DOID:3151,5.58e-08,1;DOID:3149,5.58e-08,1|ontology_enrichment_uberon=UBERON:0000166!7.86e-12!21;UBERON:0000974!1.05e-11!10;UBERON:0003729!1.72e-11!5;UBERON:0000161!2.43e-11!35;UBERON:0000165!8.62e-10!28;UBERON:0000930!8.62e-10!28;UBERON:0003343!1.93e-09!4;UBERON:0004785!1.93e-09!4;UBERON:0003102!9.37e-09!95;UBERON:0001004!5.22e-08!72;UBERON:0000344!8.63e-08!12;UBERON:0004119!1.23e-07!169;UBERON:0000925!1.23e-07!169;UBERON:0006595!1.23e-07!169;UBERON:0006562!1.91e-07!11;UBERON:0001949!3.97e-07!3;UBERON:0000365!5.74e-07!5;UBERON:0001723!9.31e-07!3;UBERON:0001033!9.31e-07!3;UBERON:0010056!9.31e-07!3|ontology_enrichment_uberon_v019=UBERON:0003343;8.50e-15;4!UBERON:0004785;8.50e-15;4!UBERON:0002419;7.59e-14;2!UBERON:0007771;7.59e-14;2!UBERON:0003297;7.59e-14;2!UBERON:0001821;7.59e-14;2!UBERON:0003487;7.59e-14;2!UBERON:0001820;7.59e-14;2!UBERON:0003729;5.77e-12;13!UBERON:0000161;2.92e-11;19!UBERON:0000166;2.92e-11;19!UBERON:0000165;4.31e-10;28!UBERON:0000974;4.90e-10;6!UBERON:0000344;1.07e-07;20!UBERON:0001911;3.17e-07;4!UBERON:0001003;4.85e-07;15!UBERON:0007376;4.85e-07;15!UBERON:0002365;8.20e-07;31!UBERON:0002330;8.20e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0003343,5.31e-15,4;UBERON:0004785,5.31e-15,4;UBERON:0002419,5.88e-14,2;UBERON:0007771,5.88e-14,2;UBERON:0003297,5.88e-14,2;UBERON:0001821,5.88e-14,2;UBERON:0003487,5.88e-14,2;UBERON:0001820,5.88e-14,2;UBERON:0005089,5.88e-14,2;UBERON:0005088,5.88e-14,2;UBERON:0003102,4.89e-13,99;UBERON:0003729,4.26e-12,13;UBERON:0000161,5.00e-10,36;UBERON:0000165,1.01e-09,29;UBERON:0000930,1.01e-09,29;UBERON:0000166,1.17e-09,22;UBERON:0000344,8.83e-08,20;UBERON:0000033,1.51e-07,56;UBERON:0001911,3.60e-07,4;UBERON:0005333,3.60e-07,4;UBERON:0008425,3.60e-07,4;UBERON:0005311,3.60e-07,4;UBERON:0001003,5.17e-07,15;UBERON:0007376,5.17e-07,15;UBERON:0007383,5.17e-07,15;UBERON:0001444,5.40e-07,49;UBERON:0001004,9.22e-07,74|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.164201178899891,0.393553906568396,0,0,0,0,0.30120591877825,0.369754010166788,0.0774672005803016,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45718115317017,0.741568885568859,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,1.63647672354501,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08525542276389,0,2.01057944823262,2.40729957412177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.671928512795438,1.41775097242386,1.25381931783988,2.3250715081117,0.383382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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C2735 | |||
|description=CAGE_peak_at_chr3:189590650..189590662,+ | |||
|id=chr3:189590650..189590662,+ | |||
|ontology_enrichment_celltype=CL:0002076!9.83e-23!43;CL:0000223!5.06e-19!59;CL:0002251!1.06e-14!21;CL:0000066!7.00e-10!254;CL:0002159!7.63e-10!13;CL:0002368!1.93e-09!13;CL:0000622!1.45e-07!5;CL:0002621!3.97e-07!3;CL:0000076!6.42e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.47e-23;42!CL:0000622;2.86e-20;5!CL:0002251;9.30e-19;20!CL:0000154;6.27e-17;6!CL:0002159;8.59e-16;14!CL:0000317;7.59e-14;2!CL:1000448;7.59e-14;2!CL:0002308;7.59e-14;2!CL:0002140;7.59e-14;2!CL:0000362;1.12e-11;9!CL:0000150;2.41e-11;9!CL:0000240;2.62e-10;6!CL:0000311;2.62e-10;6!CL:0000079;2.62e-10;6!CL:0000237;2.62e-10;6!CL:0000076;7.70e-10;63!CL:0002231;1.29e-09;3!CL:0002623;4.17e-09;3!CL:0002368;4.33e-08;13!CL:0002336;7.75e-08;1!CL:0002261;7.75e-08;1!CL:0002170;7.75e-08;1!CL:0002077;1.30e-07;34!CL:0002252;1.91e-07;1!CL:0002327;3.17e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.37e-26,42;CL:0000622,4.28e-20,5;CL:0002251,9.56e-19,20;CL:0000223,1.75e-18,58;CL:0000076,7.41e-17,63;CL:0000154,8.75e-17,6;CL:0002159,9.32e-16,14;CL:0000066,1.16e-15,253;CL:0000317,5.88e-14,2;CL:1000448,5.88e-14,2;CL:0002308,5.88e-14,2;CL:0002140,5.88e-14,2;CL:0000362,1.25e-11,9;CL:0000150,3.00e-11,9;CL:0000240,3.38e-10,6;CL:0000311,3.38e-10,6;CL:0000079,3.38e-10,6;CL:0000237,3.38e-10,6;CL:0000036,3.38e-10,6;CL:0000357,3.38e-10,6;CL:0000114,3.38e-10,6;CL:0002231,1.04e-09,3;CL:0002623,6.84e-09,3;CL:0002077,3.35e-08,34;CL:0002368,4.42e-08,13;CL:0002336,7.76e-08,1;CL:0002261,7.76e-08,1;CL:0002170,7.76e-08,1;CL:0002252,2.17e-07,1;CL:0002327,3.60e-07,4;CL:0002321,9.54e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000223;3.23e-11;58!CL:0000357;2.62e-10;6!CL:0000114;2.62e-10;6 | |||
|ontology_enrichment_disease=DOID:1749!3.68e-17!14;DOID:0060058!6.73e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.75e-27;14!DOID:3151;7.75e-08;1!DOID:3149;7.75e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.07e-27,14;DOID:3151,5.58e-08,1;DOID:3149,5.58e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0000166!7.86e-12!21;UBERON:0000974!1.05e-11!10;UBERON:0003729!1.72e-11!5;UBERON:0000161!2.43e-11!35;UBERON:0000165!8.62e-10!28;UBERON:0000930!8.62e-10!28;UBERON:0003343!1.93e-09!4;UBERON:0004785!1.93e-09!4;UBERON:0003102!9.37e-09!95;UBERON:0001004!5.22e-08!72;UBERON:0000344!8.63e-08!12;UBERON:0004119!1.23e-07!169;UBERON:0000925!1.23e-07!169;UBERON:0006595!1.23e-07!169;UBERON:0006562!1.91e-07!11;UBERON:0001949!3.97e-07!3;UBERON:0000365!5.74e-07!5;UBERON:0001723!9.31e-07!3;UBERON:0001033!9.31e-07!3;UBERON:0010056!9.31e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0003343;8.50e-15;4!UBERON:0004785;8.50e-15;4!UBERON:0002419;7.59e-14;2!UBERON:0007771;7.59e-14;2!UBERON:0003297;7.59e-14;2!UBERON:0001821;7.59e-14;2!UBERON:0003487;7.59e-14;2!UBERON:0001820;7.59e-14;2!UBERON:0003729;5.77e-12;13!UBERON:0000161;2.92e-11;19!UBERON:0000166;2.92e-11;19!UBERON:0000165;4.31e-10;28!UBERON:0000974;4.90e-10;6!UBERON:0000344;1.07e-07;20!UBERON:0001911;3.17e-07;4!UBERON:0001003;4.85e-07;15!UBERON:0007376;4.85e-07;15!UBERON:0002365;8.20e-07;31!UBERON:0002330;8.20e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,5.31e-15,4;UBERON:0004785,5.31e-15,4;UBERON:0002419,5.88e-14,2;UBERON:0007771,5.88e-14,2;UBERON:0003297,5.88e-14,2;UBERON:0001821,5.88e-14,2;UBERON:0003487,5.88e-14,2;UBERON:0001820,5.88e-14,2;UBERON:0005089,5.88e-14,2;UBERON:0005088,5.88e-14,2;UBERON:0003102,4.89e-13,99;UBERON:0003729,4.26e-12,13;UBERON:0000161,5.00e-10,36;UBERON:0000165,1.01e-09,29;UBERON:0000930,1.01e-09,29;UBERON:0000166,1.17e-09,22;UBERON:0000344,8.83e-08,20;UBERON:0000033,1.51e-07,56;UBERON:0001911,3.60e-07,4;UBERON:0005333,3.60e-07,4;UBERON:0008425,3.60e-07,4;UBERON:0005311,3.60e-07,4;UBERON:0001003,5.17e-07,15;UBERON:0007376,5.17e-07,15;UBERON:0007383,5.17e-07,15;UBERON:0001444,5.40e-07,49;UBERON:0001004,9.22e-07,74 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.164201178899891,0.393553906568396,0,0,0,0,0.30120591877825,0.369754010166788,0.0774672005803016,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45718115317017,0.741568885568859,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,1.63647672354501,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.08525542276389,0,2.01057944823262,2.40729957412177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.671928512795438,1.41775097242386,1.25381931783988,2.3250715081117,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6065841139427,2.4861867012692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,1.72279661398852,10.4009639365843,0,0,0,0,0,0,0,0,0,3.63626813794152,2.49847087574638,0.893288987462089,2.2254711788221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.658589785919804,0,0,1.34710957815717,0,0,0.188287601553558,0.86101074534246,0,0.886860307073351,1.83778720165568,0,0,0,0.238231775457789,0,0,0,0,0,0,1.22520107990516,0.371606350251437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16480387422676,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04828206913899,0.762760950878299,0,0,1.16641845353302,0,0,0,0,0,0,0,0,4.0432885840795,0.0769502585037971,0,0,0.179515288819544,0,0.31900115973192,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.593042257361244,0.123563938946503,0.208843899010911,0,0,0,0.547364367646998,0.391329237864179,0.485560759068186,0,0,0,0,0,0,0,0,0,0,0,0.554698692052555,0,0.979923974143776,0.261177619741208,0.17472666824203,0,0,0,0,0.484945082442097,0,0.225980740780532,0,0,0,0,0,0,0.799238438328521,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,2.68347750079413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0.74988244777264,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.999936979274649,0,0,0,0,0.979156554036111,1.24415452006595,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86480665151949,0.589848616738702,9.53828712312731,1.5018336599544,0.381382095467167,0,0,0,0,0,0.261906694481422,0,0,0,0,0,0,0,0,0,0,0.511049710558381,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0,0,0,0,0,1.24329698497822,1.19502933965765,0,0,0.118332000730565,0.170426809518315,0,0,0,0,0,0,0,0,0.205325613712494,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0.0999411559249289,1.78553938605658,1.76447435857846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.213233981900981,0.476128862927481,0.0645889098360061,0.124149428591716,0,0,0,0.435433495793923,0.342233301085281,0.134704106029175,0,0,0.244209805832924,0,0,0,0,0,0.813792356631477,0,0,0 | |||
|short_description=p@chr3:189590650..189590662,+ | |||
}} |
Revision as of 23:19, 12 September 2013
Short description: | p@chr3:189590650..189590662, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:189590650..189590662, + |
Coexpression cluster: | C2735_oral_Sebocyte_Keratinocyte_Small_cervical_Prostate_keratoacanthoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 5.31e-15 | 4 |
respiratory system mucosa | 5.31e-15 | 4 |
skin gland | 5.88e-14 | 2 |
epidermis gland | 5.88e-14 | 2 |
gland of integumental system | 5.88e-14 | 2 |
sebaceous gland | 5.88e-14 | 2 |
skin sebaceous gland | 5.88e-14 | 2 |
sweat gland | 5.88e-14 | 2 |
sweat gland placode | 5.88e-14 | 2 |
sebaceous gland placode | 5.88e-14 | 2 |
surface structure | 4.89e-13 | 99 |
mouth mucosa | 4.26e-12 | 13 |
orifice | 5.00e-10 | 36 |
mouth | 1.01e-09 | 29 |
stomodeum | 1.01e-09 | 29 |
oral opening | 1.17e-09 | 22 |
mucosa | 8.83e-08 | 20 |
head | 1.51e-07 | 56 |
mammary gland | 3.60e-07 | 4 |
mammary bud | 3.60e-07 | 4 |
mammary ridge | 3.60e-07 | 4 |
mammary placode | 3.60e-07 | 4 |
skin epidermis | 5.17e-07 | 15 |
outer epithelium | 5.17e-07 | 15 |
enveloping layer of ectoderm | 5.17e-07 | 15 |
subdivision of head | 5.40e-07 | 49 |
respiratory system | 9.22e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.07e-27 | 14 |
skin squamous cell carcinoma | 5.58e-08 | 1 |
keratoacanthoma | 5.58e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.