FFCP PHASE1:Hg19::chr3:33481687..33481713,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7342|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12507|TSSclassifier=S|UniProt=Q9NZI7|association_with_transcript=156bp_to_ENST00000283629,NM_001128160,NM_014517,uc003cfq.3,uc003cfr.3_5end|description=CAGE_peak_4_at_UBP1_5end|id=chr3:33481687..33481713,-|ontology_enrichment_celltype=CL:0000548!5.27e-18!679;CL:0000004!5.27e-18!679;CL:0000255!5.27e-18!679;CL:0000012!5.12e-17!682;CL:0002371!5.39e-14!591;CL:0000144!4.96e-13!625;CL:0000055!3.97e-12!180;CL:0000048!5.54e-11!430;CL:0000723!1.63e-10!436;CL:0000034!5.36e-10!444;CL:0000003!8.97e-09!722;CL:0002009!1.70e-08!65;CL:0000063!1.87e-08!578;CL:0000557!2.51e-08!71;CL:0000222!3.03e-08!119;CL:0002194!5.28e-08!63;CL:0000576!5.28e-08!63;CL:0000040!5.28e-08!63;CL:0000559!5.28e-08!63;CL:0000057!1.11e-07!75;CL:0000680!3.92e-07!57;CL:0000056!3.92e-07!57;CL:0000355!3.92e-07!57;CL:0000766!4.17e-07!76;CL:0000183!7.10e-07!59;CL:0000839!9.51e-07!70|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000048,7.43e-10,427;CL:0002009,8.38e-10,61;CL:0000723,8.68e-10,433;CL:0000557,2.96e-09,67;CL:0000034,3.44e-09,441;CL:0002194,4.23e-09,59;CL:0000576,4.23e-09,59;CL:0000040,4.23e-09,59;CL:0000559,4.23e-09,59;CL:0000766,7.77e-09,72;CL:0000839,1.06e-07,66;CL:0000134,3.89e-07,354;CL:0002320,5.23e-07,361|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000926!1.73e-18!448;UBERON:0004120!1.73e-18!448;UBERON:0006603!1.73e-18!448;UBERON:0002204!4.22e-12!167;UBERON:0003081!2.43e-09!216;UBERON:0000490!1.73e-08!138;UBERON:0002371!4.12e-08!80;UBERON:0002405!4.70e-08!115;UBERON:0000468!1.13e-07!659;UBERON:0000480!2.81e-07!626;UBERON:0000467!3.07e-07!625;UBERON:0003914!4.55e-07!118|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0000926,4.59e-13,315;UBERON:0004120,4.59e-13,315;UBERON:0006603,4.59e-13,315;UBERON:0003081,3.73e-10,203;UBERON:0002371,8.13e-09,76;UBERON:0002204,3.81e-08,167;UBERON:0001474,2.48e-07,82;UBERON:0002384,4.82e-07,371|phase1_expression=1.45342703416445,1.92690471501885,2.53717927372748,0,2.23480547213644,0.872338524100369,0,0,0.783556884599516,0.737201809504527,0,0.655324116390517,0,0.618831764800233,0.662794751455832,0,1.20538905604795,1.46062018077475,0.487932798790507,0.61560529038394,0.408001382488506,0.313454721478088,0,0.410623275218653,0.502170558379211,0,0.328402357799783,0.314843125254717,0,2.30297638858328,1.23852898652861,0,0.6024118375565,0.369754010166788,0.232401601740905,0.853015394924529,0,1.66198622559563,1.60435557976113,4.34021741431704,1.34349284543955,1.29557466407592,0.515151135268373,1.16318591023652,0.377875943688809,0.242584061187816,1.62700325833979,1.23350366406548,1.54853185447552,1.1507695692886,1.7931249457037,1.18241114944293,1.03423704220986,3.22742341791913,1.35426486594342,2.44715041405386,0.545812300115692,0.674170453335254,1.53041946185451,0.641858054152187,1.91801137739712,0.989553900560148,1.19678194572979,0,0.580418477257168,1.70215567407342,1.86846674698672,1.25624332628372,0.521482918420201,1.08594422352558,2.42159801053347,1.84138817993782,0.316462387440884,0,0.637812899895131,0.419317291016752,0.336985893439485,1.05123824989054,0.964353520182481,0,0.39783335439818,0.182664153764634,0,0.546138611262131,0,0,0,0,0,0,0,1.17447437874188,0,0,0,0,0,0,0,0.167186495390678,0.32592226663359,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,1.2786256184353,1.80719576192283,1.50401373190767,0.434539556882471,0.795285947051099,0.486634870302636,0.378139268656271,0.221729397462564,0.351339142772504,0.916853528483988,0,0,2.59637914923747,1.74129737299267,1.86141144726411,0,1.14398982156026,0,2.78267370313387,0,1.04142150482278,1.13061588384802,0.838998872419812,2.20094433552054,1.8809546988313,1.03366703667732,0.35576626268671,1.00416183829401,0.805658634218294,0.760272105718513,0.488124115096339,2.20597848207521,0.81014194788176,1.60739510911344,0.898117490504679,1.23872628531654,0,0.949265659568129,1.46561395144326,1.31780417436063,0,0.872188104285069,0.993943903390637,2.02608818663328,1.05927344650575,1.14734648299525,1.41867352879343,0.560677600142307,3.20246987189115,0.74000264525148,2.17847724779836,1.21239604862719,1.79808093424805,0.454072282934794,0,0.937285727335186,0.936480230490962,0.570471821544449,1.79338416662161,1.17434498643765,0.647491777472526,0.421352420106746,1.42907919878425,0.61417158655884,2.27316718586684,3.56400857184616,1.23633464639278,2.73048408581408,0,0.168336113954066,0.750711119231785,1.10825646193673,1.31693286264251,0.612975591598039,0.300476117813194,2.1552114800404,0.717558542755448,0.427114777637135,0.211931901159562,1.50045548042201,1.33968288009971,0.515281080091258,1.11670113798954,0.506328996723799,1.55899208257918,0.757301322732344,0.736399189138395,0,0.355009592516614,0.705264687593482,1.01736355386293,0.1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7342 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12507 | |||
|TSSclassifier=S | |||
|UniProt=Q9NZI7 | |||
|association_with_transcript=156bp_to_ENST00000283629,NM_001128160,NM_014517,uc003cfq.3,uc003cfr.3_5end | |||
|description=CAGE_peak_4_at_UBP1_5end | |||
|id=chr3:33481687..33481713,- | |||
|ontology_enrichment_celltype=CL:0000548!5.27e-18!679;CL:0000004!5.27e-18!679;CL:0000255!5.27e-18!679;CL:0000012!5.12e-17!682;CL:0002371!5.39e-14!591;CL:0000144!4.96e-13!625;CL:0000055!3.97e-12!180;CL:0000048!5.54e-11!430;CL:0000723!1.63e-10!436;CL:0000034!5.36e-10!444;CL:0000003!8.97e-09!722;CL:0002009!1.70e-08!65;CL:0000063!1.87e-08!578;CL:0000557!2.51e-08!71;CL:0000222!3.03e-08!119;CL:0002194!5.28e-08!63;CL:0000576!5.28e-08!63;CL:0000040!5.28e-08!63;CL:0000559!5.28e-08!63;CL:0000057!1.11e-07!75;CL:0000680!3.92e-07!57;CL:0000056!3.92e-07!57;CL:0000355!3.92e-07!57;CL:0000766!4.17e-07!76;CL:0000183!7.10e-07!59;CL:0000839!9.51e-07!70 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,7.43e-10,427;CL:0002009,8.38e-10,61;CL:0000723,8.68e-10,433;CL:0000557,2.96e-09,67;CL:0000034,3.44e-09,441;CL:0002194,4.23e-09,59;CL:0000576,4.23e-09,59;CL:0000040,4.23e-09,59;CL:0000559,4.23e-09,59;CL:0000766,7.77e-09,72;CL:0000839,1.06e-07,66;CL:0000134,3.89e-07,354;CL:0002320,5.23e-07,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!1.73e-18!448;UBERON:0004120!1.73e-18!448;UBERON:0006603!1.73e-18!448;UBERON:0002204!4.22e-12!167;UBERON:0003081!2.43e-09!216;UBERON:0000490!1.73e-08!138;UBERON:0002371!4.12e-08!80;UBERON:0002405!4.70e-08!115;UBERON:0000468!1.13e-07!659;UBERON:0000480!2.81e-07!626;UBERON:0000467!3.07e-07!625;UBERON:0003914!4.55e-07!118 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,4.59e-13,315;UBERON:0004120,4.59e-13,315;UBERON:0006603,4.59e-13,315;UBERON:0003081,3.73e-10,203;UBERON:0002371,8.13e-09,76;UBERON:0002204,3.81e-08,167;UBERON:0001474,2.48e-07,82;UBERON:0002384,4.82e-07,371 | |||
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| |||
|short_description=p4@UBP1 | |||
}} |
Revision as of 23:53, 12 September 2013
Short description: | p4@UBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_UBP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 156bp_to_ENST00000283629, NM_001128160, NM_014517, uc003cfq.3, uc003cfr.3_5end |
EntrezGene: | UBP1 |
HGNC: | 12507 |
UniProt: | Q9NZI7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 7.43e-10 | 427 |
macrophage dendritic cell progenitor | 8.38e-10 | 61 |
somatic stem cell | 8.68e-10 | 433 |
granulocyte monocyte progenitor cell | 2.96e-09 | 67 |
stem cell | 3.44e-09 | 441 |
monopoietic cell | 4.23e-09 | 59 |
monocyte | 4.23e-09 | 59 |
monoblast | 4.23e-09 | 59 |
promonocyte | 4.23e-09 | 59 |
myeloid leukocyte | 7.77e-09 | 72 |
myeloid lineage restricted progenitor cell | 1.06e-07 | 66 |
mesenchymal cell | 3.89e-07 | 354 |
connective tissue cell | 5.23e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 4.59e-13 | 315 |
mesoderm-derived structure | 4.59e-13 | 315 |
presumptive mesoderm | 4.59e-13 | 315 |
lateral plate mesoderm | 3.73e-10 | 203 |
bone marrow | 8.13e-09 | 76 |
musculoskeletal system | 3.81e-08 | 167 |
bone element | 2.48e-07 | 82 |
connective tissue | 4.82e-07 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.