FFCP PHASE1:Hg19::chr9:124088949..124088972,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2934|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4620|TSSclassifier=S|UniProt=Q5T0H7|association_with_transcript=-37bp_to_ENST00000373805_5end|coexpression_cluster_id=C106|description=CAGE_peak_11_at_GSN_5end|id=chr9:124088949..124088972,+|ontology_enrichment_celltype=CL:0002334!2.45e-08!12;CL:0000136!2.79e-08!15|ontology_enrichment_celltype_v019=CL:0002541;1.30e-11;3!CL:0002144;1.30e-11;3|ontology_enrichment_celltype_v019_2=CL:0002541,9.68e-12,3;CL:0002144,9.68e-12,3|ontology_enrichment_development_v019=UBERON:0008947;2.22e-20;29|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!7.73e-18!115;UBERON:0001737!5.36e-12!9;UBERON:0000477!1.59e-08!286;UBERON:0003124!3.68e-08!7;UBERON:0001557!1.07e-07!19;UBERON:0004457!1.15e-07!12;UBERON:0000042!1.15e-07!12;UBERON:0004923!2.15e-07!57;UBERON:0003688!6.00e-07!6;UBERON:0002358!6.00e-07!6;UBERON:0003684!6.00e-07!6;UBERON:0001178!6.00e-07!6;UBERON:0000468!6.34e-07!659;UBERON:0005631!6.58e-07!14;UBERON:0000158!6.58e-07!14|ontology_enrichment_uberon_v019=UBERON:0001737;6.32e-36;9!UBERON:0001557;6.32e-36;9!UBERON:0010523;1.30e-11;3!UBERON:0001915;1.30e-11;3!UBERON:0003124;1.30e-11;3!UBERON:0000920;1.30e-11;3!UBERON:0001982;1.30e-11;3!UBERON:0000065;2.73e-11;44!UBERON:0004457;4.29e-10;9!UBERON:0000042;4.29e-10;9!UBERON:0000072;6.63e-10;37!UBERON:0005631;6.97e-09;10!UBERON:0000158;6.97e-09;10!UBERON:0005406;1.42e-08;2!UBERON:0003127;2.15e-08;2|ontology_enrichment_uberon_v019_2=UBERON:0001737,6.39e-36,9;UBERON:0001557,1.33e-23,19;UBERON:0008947,7.52e-15,38;UBERON:0003258,7.52e-15,38;UBERON:0003124,1.80e-13,7;UBERON:0000065,6.39e-13,54;UBERON:0005631,4.22e-12,14;UBERON:0000158,4.22e-12,14;UBERON:0010523,9.68e-12,3;UBERON:0001915,9.68e-12,3;UBERON:0000920,9.68e-12,3;UBERON:0001982,9.68e-12,3;UBERON:0000072,1.91e-11,47;UBERON:0001041,2.72e-10,87;UBERON:0005406,1.18e-08,2;UBERON:0003127,1.54e-08,2;UBERON:0001004,1.70e-08,74;UBERON:0004923,8.94e-08,66;UBERON:0004457,2.01e-07,12;UBERON:0000042,2.01e-07,12|phase1_expression=0.363356758541113,0.642301571672949,1.26858963686374,1.0007329835313,0.893922188854576,5.23403114460221,0,0,0.522371256399677,0,0,0.873765488520689,1.05506791291381,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,1.00267582127178,0.289693037921647,0,0.486634870302636,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0.79504962946682,0,0,0,0,0.275118041940067,0,0.258416759169329,0.35576626268671,0.33472061276467,1.20848795132744,1.52054421143703,2.68468263302986,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0.872188104285069,0.496971951695318,2.27934920996244,0.132409180813219,0,1.06400514659507,1.12135520028461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0.300091096084402,0,0,0.18611685633159,0,0.194874010322397,0,0,0.323292113637624,0,0,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,17.2727928058172,13.31819051617,9.3994301654558,17.0955657735211,10.8939722046203,7.1181185733329,15.5056004384189,15.305274279777,9.61867892365976,0,0,0,0,0,4.91413608338813,1.77236972004421,0,0,0,0,0,0,0,0,0,0,0,0,5.34155856715973,5.09284063834272,6.27838702374174,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,3.32870879020994,0.30239029332968,1.98486246255021,0.153461973288062,1.12264037773229,1.15325234330131,0.511707249066704,0.804269605718038,1.48418066444991,0.154209693802656,0,0.164254312027618,0.519254429183621,0.232420756919918,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0,0,0,0,2.57602529119306,0,0.082509499920588,0,0,0,0,0.154048617114644,0.15350367472613,0,0.107420244868274,0.580066775656914,0.0852266274161009,0,0,0,0.255225424989168,0,0,0.31481234683064,0.6970372701606,0.616067160352178,0,0,0.18532421910392,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,2.74439925886963,3.95153871551882,0,0,0,0,0,2.16530741786592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,1.18785872333055,0,0,0,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.394573622547734,0,0,0.969332746095218,0.185536196323703,0,0,0,0.724999575434793,0,0,0.236387681767936,0,0,0,0.885741385813839,0.241192877250816,0,0.110579259931225,0,0.438770794307945,5.99161549354446,0.278847488557207,0,0,0,0,0,1.27600463892768,1.4655614944298,2.66517388009317,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2934 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4620 | |||
|TSSclassifier=S | |||
|UniProt=Q5T0H7 | |||
|association_with_transcript=-37bp_to_ENST00000373805_5end | |||
|coexpression_cluster_id=C106 | |||
|description=CAGE_peak_11_at_GSN_5end | |||
|id=chr9:124088949..124088972,+ | |||
|ontology_enrichment_celltype=CL:0002334!2.45e-08!12;CL:0000136!2.79e-08!15 | |||
|ontology_enrichment_celltype_v019=CL:0002541;1.30e-11;3!CL:0002144;1.30e-11;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,9.68e-12,3;CL:0002144,9.68e-12,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.22e-20;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.73e-18!115;UBERON:0001737!5.36e-12!9;UBERON:0000477!1.59e-08!286;UBERON:0003124!3.68e-08!7;UBERON:0001557!1.07e-07!19;UBERON:0004457!1.15e-07!12;UBERON:0000042!1.15e-07!12;UBERON:0004923!2.15e-07!57;UBERON:0003688!6.00e-07!6;UBERON:0002358!6.00e-07!6;UBERON:0003684!6.00e-07!6;UBERON:0001178!6.00e-07!6;UBERON:0000468!6.34e-07!659;UBERON:0005631!6.58e-07!14;UBERON:0000158!6.58e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.32e-36;9!UBERON:0001557;6.32e-36;9!UBERON:0010523;1.30e-11;3!UBERON:0001915;1.30e-11;3!UBERON:0003124;1.30e-11;3!UBERON:0000920;1.30e-11;3!UBERON:0001982;1.30e-11;3!UBERON:0000065;2.73e-11;44!UBERON:0004457;4.29e-10;9!UBERON:0000042;4.29e-10;9!UBERON:0000072;6.63e-10;37!UBERON:0005631;6.97e-09;10!UBERON:0000158;6.97e-09;10!UBERON:0005406;1.42e-08;2!UBERON:0003127;2.15e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,6.39e-36,9;UBERON:0001557,1.33e-23,19;UBERON:0008947,7.52e-15,38;UBERON:0003258,7.52e-15,38;UBERON:0003124,1.80e-13,7;UBERON:0000065,6.39e-13,54;UBERON:0005631,4.22e-12,14;UBERON:0000158,4.22e-12,14;UBERON:0010523,9.68e-12,3;UBERON:0001915,9.68e-12,3;UBERON:0000920,9.68e-12,3;UBERON:0001982,9.68e-12,3;UBERON:0000072,1.91e-11,47;UBERON:0001041,2.72e-10,87;UBERON:0005406,1.18e-08,2;UBERON:0003127,1.54e-08,2;UBERON:0001004,1.70e-08,74;UBERON:0004923,8.94e-08,66;UBERON:0004457,2.01e-07,12;UBERON:0000042,2.01e-07,12 | |||
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| |||
|short_description=p11@GSN | |||
}} |
Revision as of 07:17, 14 September 2013
Short description: | p11@GSN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_GSN_5end |
Coexpression cluster: | C106_Hep2_epitheloid_placenta_cervical_rectal_anaplastic_glassy |
Association with transcript: | -37bp_to_ENST00000373805_5end |
EntrezGene: | GSN |
HGNC: | 4620 |
UniProt: | Q5T0H7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 9.68e-12 | 3 |
capillary endothelial cell | 9.68e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 6.39e-36 | 9 |
upper respiratory tract | 1.33e-23 | 19 |
respiratory primordium | 7.52e-15 | 38 |
endoderm of foregut | 7.52e-15 | 38 |
chorion | 1.80e-13 | 7 |
respiratory tract | 6.39e-13 | 54 |
extraembryonic membrane | 4.22e-12 | 14 |
membranous layer | 4.22e-12 | 14 |
microcirculatory vessel | 9.68e-12 | 3 |
endothelium of capillary | 9.68e-12 | 3 |
egg chorion | 9.68e-12 | 3 |
capillary | 9.68e-12 | 3 |
segment of respiratory tract | 1.91e-11 | 47 |
foregut | 2.72e-10 | 87 |
perirenal fat | 1.18e-08 | 2 |
open tracheal system trachea | 1.54e-08 | 2 |
respiratory system | 1.70e-08 | 74 |
organ component layer | 8.94e-08 | 66 |
cavity lining | 2.01e-07 | 12 |
serous membrane | 2.01e-07 | 12 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.