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MCL coexpression mm9:91: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000014!1.60e-62!5;UBERON:0001003!1.60e-62!5;UBERON:0002097!1.60e-62!5;UBERON:0002199!1.60e-62!5;UBERON:0007029!1.60e-62!5;UBERON:0007376!1.60e-62!5;UBERON:0002416!1.60e-62!5;UBERON:0007383!1.60e-62!5;UBERON:0003102!1.17e-20!22
|tfbs_overrepresentation_for_novel_motifs=0.00970048,0.00229827,0.0160488,0.271627,1.38644,0.6299,0.154067,1.10058,0.0544288,0.000582135,0.0464691,0.787946,0.142455,0.0345178,1.59643,0,0.0141229,1.09025,0.0264663,0.216342,3.81655,0.154322,0.0341636,0.287258,0.080341,0.0138905,0.282359,0.143352,0.00965126,0.231446,0.0274385,0.302204,0.178621,0.0665657,0.000457353,0.0607952,0.00410224,0.133413,0.38261,0.00175236,1.55968,0.0100661,0.166597,1.17248,0.00185349,0.00525151,0.0345025,0.00363524,1.14143,0.291199,0.0583841,0.0607193,0.391729,0.250562,1.43403,0.0374098,3.45414,0.122146,0.0398154,0.0365683,0.0270975,0.0662838,0.485394,0.145512,0.0422352,0.187966,0.84478,0.362232,0.267909,0.25737,0.000176011,0.220951,2.16797e-07,0.631714,7.38424e-05,0.0343219,0.0439717,0.199086,0.472675,1.87515,0.226254,0.0754022,0.671119,0.0203752,0.05075,2.53136e-14,0.0282101,0.232277,0.392789,0.490815,0.175529,0.0522133,0.5838,0.551936,0.000170808,0.704649,0.415928,0.324898,0.100848,0.218012,0.516925,0.127303,0.0655496,0.157327,0.313841,0.000279633,0.0200966,0.268387,0.0463456,0.00259228,0.160344,0.234924,1.13,0.0494502,0.17954,0.269949,1.60651e-06,0.281503,0.0672174,0.621822,0.642345,0.451626,0.217499,0.354816,0.21169,0.256186,1.4703,0.0325266,0.42601,0.10941,0.473032,0.0882241,0.778063,0.526345,0.19209,1.67292,1.4783,0.694052,0.164082,0.815522,0.464667,1.38,0.395076,0.317336,0.0553136,0.131111,0.219655,0.779032,0.118587,0.00301156,0.000133836,4.75076e-13,0.916072,0.0713149,0.103608,0.34154,2.31716,0.708092,0.703717,0.0112672,0.169342,0.18863,0.105056,0.156025,0.771735,1.58902,0.214672,0.780443,4.63358e-07
|tfbs_overrepresentation_jaspar=MA0003.1;0,MA0004.1;0.0201013,MA0006.1;0.000387989,MA0007.1;0.14486,MA0009.1;0.963816,MA0014.1;1.1031e-11,MA0017.1;0.257499,MA0019.1;0.252936,MA0024.1;0.27793,MA0025.1;0.383317,MA0027.1;1.29143,MA0028.1;1.70477e-05,MA0029.1;1.10674,MA0030.1;0.257512,MA0031.1;0.212696,MA0038.1;0.548432,MA0040.1;0.645791,MA0041.1;0.0648389,MA0042.1;0.346381,MA0043.1;0.23219,MA0046.1;0.703389,MA0048.1;0.0021016,MA0050.1;0.3837,MA0051.1;0.817447,MA0052.1;0.665401,MA0055.1;0.0216799,MA0056.1;0,MA0057.1;0.000203154,MA0058.1;0.0226899,MA0059.1;0.0575344,MA0060.1;0.00953295,MA0061.1;0.789105,MA0063.1;0,MA0066.1;0.100423,MA0067.1;0.178812,MA0068.1;0.00482638,MA0069.1;0.666231,MA0070.1;1.00113,MA0071.1;0.381104,MA0072.1;0.622324,MA0073.1;0,MA0074.1;0.027465,MA0076.1;5.92654e-05,MA0077.1;0.313025,MA0078.1;0.156973,MA0081.1;0.462032,MA0083.1;0.499894,MA0084.1;0.403642,MA0087.1;0.42527,MA0088.1;4.82587e-06,MA0089.1;0,MA0090.1;0.977945,MA0091.1;0.830862,MA0092.1;0.192423,MA0093.1;0.00677108,MA0095.1;0,MA0098.1;0,MA0100.1;0.0237765,MA0101.1;0.546621,MA0103.1;0.406677,MA0105.1;0.0139461,MA0106.1;0.492213,MA0107.1;0.504303,MA0108.2;10.0098,MA0109.1;0,MA0111.1;0.136587,MA0113.1;0.251635,MA0114.1;0.102403,MA0115.1;0.06616,MA0116.1;0.0214933,MA0117.1;0.204228,MA0119.1;0.00517796,MA0122.1;0.222867,MA0124.1;1.43536,MA0125.1;1.20614,MA0130.1;0,MA0131.1;0.00797884,MA0132.1;0,MA0133.1;0,MA0135.1;0.568267,MA0136.1;0.00985499,MA0139.1;0.000486025,MA0140.1;0.54438,MA0141.1;0.50337,MA0142.1;0.630044,MA0143.1;0.15209,MA0144.1;0.0700231,MA0145.1;0.000181055,MA0146.1;9.90277e-06,MA0147.1;0.00344125,MA0148.1;0.117141,MA0149.1;0.000293036,MA0062.2;1.62395e-07,MA0035.2;1.03032,MA0039.2;2.18242e-12,MA0138.2;0.920145,MA0002.2;1.44626,MA0137.2;0.256041,MA0104.2;0.00106386,MA0047.2;0.110178,MA0112.2;0.00492797,MA0065.2;0.000821024,MA0150.1;0.0804206,MA0151.1;0,MA0152.1;0.775704,MA0153.1;0.286845,MA0154.1;0.0290827,MA0155.1;0.000119572,MA0156.1;0.00485841,MA0157.1;0.321685,MA0158.1;0,MA0159.1;0.0221337,MA0160.1;0.325359,MA0161.1;0,MA0162.1;1.68714e-12,MA0163.1;6.25849e-14,MA0164.1;0.462697,MA0080.2;0.00351461,MA0018.2;0.0388413,MA0099.2;1.57831,MA0079.2;0,MA0102.2;0.445208,MA0258.1;0.116382,MA0259.1;0.00085548,MA0442.1;0
}}

Latest revision as of 14:40, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:17416380..17416384,-p@chr10:17416380..17416384
-
Mm9::chr10:22368809..22368815,+p5@Slc2a12
Mm9::chr10:43868747..43868756,-p@chr10:43868747..43868756
-
Mm9::chr10:66991117..66991146,+p@chr10:66991117..66991146
+
Mm9::chr10:77230095..77230103,-p@chr10:77230095..77230103
-
Mm9::chr10:83434100..83434119,+p@chr10:83434100..83434119
+
Mm9::chr10:85564906..85564911,-p@chr10:85564906..85564911
-
Mm9::chr10:8747023..8747053,-p@chr10:8747023..8747053
-
Mm9::chr11:100067771..100067789,+p@chr11:100067771..100067789
+
Mm9::chr11:100068064..100068071,+p@chr11:100068064..100068071
+
Mm9::chr11:20781490..20781511,-p@chr11:20781490..20781511
-
Mm9::chr11:36246294..36246305,-p@chr11:36246294..36246305
-
Mm9::chr11:36246333..36246342,-p@chr11:36246333..36246342
-
Mm9::chr11:36246361..36246377,-p@chr11:36246361..36246377
-
Mm9::chr11:36246385..36246397,-p@chr11:36246385..36246397
-
Mm9::chr11:36246457..36246489,-p@chr11:36246457..36246489
-
Mm9::chr11:46034902..46034911,-p@chr11:46034902..46034911
-
Mm9::chr11:67430652..67430669,+p@chr11:67430652..67430669
+
Mm9::chr11:70136022..70136039,-p1@Alox12e
Mm9::chr11:98487658..98487663,+p1@Gsdma3
Mm9::chr11:99394776..99394782,+p@chr11:99394776..99394782
+
Mm9::chr11:99505295..99505313,-p@chr11:99505295..99505313
-
Mm9::chr11:99601435..99601439,-p1@ENSMUST00000105065
Mm9::chr11:99625467..99625471,-p1@ENSMUST00000105060
Mm9::chr12:105290936..105290965,+p@chr12:105290936..105290965
+
Mm9::chr12:105391268..105391276,-p@chr12:105391268..105391276
-
Mm9::chr12:80594620..80594625,-p@chr12:80594620..80594625
-
Mm9::chr13:113381448..113381495,-p@chr13:113381448..113381495
-
Mm9::chr13:33658111..33658121,-p@chr13:33658111..33658121
-
Mm9::chr13:38241316..38241321,+p@chr13:38241316..38241321
+
Mm9::chr13:38241355..38241361,+p@chr13:38241355..38241361
+
Mm9::chr13:47369862..47369869,-p@chr13:47369862..47369869
-
Mm9::chr13:56710594..56710618,+p5@Tgfbi
Mm9::chr14:23454827..23454832,-p@chr14:23454827..23454832
-
Mm9::chr14:34904993..34905000,+p@chr14:34904993..34905000
+
Mm9::chr15:101537858..101537876,-p@chr15:101537858..101537876
-
Mm9::chr15:101540079..101540094,-p@chr15:101540079..101540094
-
Mm9::chr15:101564845..101564850,-p@chr15:101564845..101564850
-
Mm9::chr15:101700126..101700143,-p1@Krt77
Mm9::chr15:101700233..101700241,-p2@Krt77
Mm9::chr15:35243028..35243069,+p@chr15:35243028..35243069
+
Mm9::chr15:79498971..79498976,+p@chr15:79498971..79498976
+
Mm9::chr16:24012830..24012836,+p@chr16:24012830..24012836
+
Mm9::chr16:24013460..24013467,-p@chr16:24013460..24013467
-
Mm9::chr16:24013485..24013495,-p@chr16:24013485..24013495
-
Mm9::chr16:30283252..30283257,-p2@Lrrc15
Mm9::chr16:89092340..89092350,+p@chr16:89092340..89092350
+
Mm9::chr16:89122776..89122779,-p@chr16:89122776..89122779
-
Mm9::chr16:89129446..89129450,+p@chr16:89129446..89129450
+
Mm9::chr16:89133101..89133103,+p@chr16:89133101..89133103
+
Mm9::chr16:89169678..89169682,+p1@Gm19364
Mm9::chr16:89174977..89174981,+p1@ENSMUST00000089097
Mm9::chr16:89183504..89183508,+p@chr16:89183504..89183508
+
Mm9::chr16:89206103..89206107,+p1@Gm2692
p1@Gm6379
p1@Krtap20-2
p1@Krtap6-3
p1@LOC100045008
p1@LOC100048551
Mm9::chr16:89211720..89211726,+p@chr16:89211720..89211726
+
Mm9::chr16:89216174..89216177,+p@chr16:89216174..89216177
+
Mm9::chr16:89227071..89227076,+p@chr16:89227071..89227076
+
Mm9::chr16:89251242..89251248,+p@chr16:89251242..89251248
+
Mm9::chr16:89274696..89274702,+p@chr16:89274696..89274702
+
Mm9::chr16:89288572..89288579,+p@chr16:89288572..89288579
+
Mm9::chr16:89307171..89307182,+p@chr16:89307171..89307182
+
Mm9::chr17:14011569..14011589,+p8@Mllt4
Mm9::chr17:14011908..14011919,+p13@Mllt4
Mm9::chr17:14011923..14011933,+p14@Mllt4
Mm9::chr17:29235674..29235685,+p@chr17:29235674..29235685
+
Mm9::chr17:35211430..35211442,-p2@Ly6g6d
Mm9::chr17:37126473..37126481,-p1@H2-M5
Mm9::chr17:62954305..62954307,-p@chr17:62954305..62954307
-
Mm9::chr17:63231450..63231522,-p@chr17:63231450..63231522
-
Mm9::chr17:63231775..63231809,-p@chr17:63231775..63231809
-
Mm9::chr17:7838160..7838168,+p@chr17:7838160..7838168
+
Mm9::chr19:10954879..10954901,-p3@Tmem109
Mm9::chr19:25375076..25375082,+p@chr19:25375076..25375082
+
Mm9::chr19:47766436..47766469,-p2@Col17a1
Mm9::chr19:47766497..47766517,-p1@Col17a1
Mm9::chr19:47766518..47766523,-p6@Col17a1
Mm9::chr19:47766532..47766543,-p5@Col17a1
Mm9::chr19:9080194..9080198,+p@chr19:9080194..9080198
+
Mm9::chr19:9176962..9176969,+p@chr19:9176962..9176969
+
Mm9::chr19:9177003..9177024,+p@chr19:9177003..9177024
+
Mm9::chr1:134968330..134968350,-p@chr1:134968330..134968350
-
Mm9::chr1:182312482..182312494,+p@chr1:182312482..182312494
+
Mm9::chr1:191609138..191609151,+p@chr1:191609138..191609151
+
Mm9::chr1:34227957..34227994,+p@chr1:34227957..34227994
+
Mm9::chr1:59600983..59600997,+p@chr1:59600983..59600997
+
Mm9::chr1:59601035..59601089,+p@chr1:59601035..59601089
+
Mm9::chr2:129303859..129303891,-p@chr2:129303859..129303891
-
Mm9::chr2:152582732..152582741,+p@chr2:152582732..152582741
+
Mm9::chr2:20261028..20261030,-p@chr2:20261028..20261030
-
Mm9::chr2:33192422..33192429,-p@chr2:33192422..33192429
-
Mm9::chr2:73971558..73971583,+p@chr2:73971558..73971583
+
Mm9::chr2:79479351..79479364,+p8@Ssfa2
Mm9::chr3:92992504..92992522,+p@chr3:92992504..92992522
+
Mm9::chr3:93246329..93246336,+p@chr3:93246329..93246336
+
Mm9::chr3:93247815..93247825,+p@chr3:93247815..93247825
+
Mm9::chr3:93248356..93248364,+p@chr3:93248356..93248364
+
Mm9::chr3:94935357..94935362,+p@chr3:94935357..94935362
+
Mm9::chr4:111645637..111645677,+p3@Skint7
Mm9::chr4:111745281..111745290,+p3@Skint4
Mm9::chr4:111904871..111904879,+p4@Skint3
Mm9::chr4:111957406..111957418,+p@chr4:111957406..111957418
+
Mm9::chr4:112933933..112933936,-p@chr4:112933933..112933936
-
Mm9::chr4:113672092..113672102,-p2@Skint5
Mm9::chr4:113672105..113672116,-p1@Skint5
Mm9::chr4:113672125..113672136,-p3@Skint5
Mm9::chr4:113836025..113836039,+p3@Skint11
Mm9::chr4:113836042..113836053,+p2@Skint11
Mm9::chr4:113836063..113836075,+p1@Skint11
Mm9::chr4:56070658..56070666,+p@chr4:56070658..56070666
+
Mm9::chr5:118872009..118872014,-p@chr5:118872009..118872014
-
Mm9::chr5:52583423..52583444,-p@chr5:52583423..52583444
-
Mm9::chr5:68157953..68157957,-p@chr5:68157953..68157957
-
Mm9::chr5:98129817..98129834,+p@chr5:98129817..98129834
+
Mm9::chr6:140346639..140346660,-p@chr6:140346639..140346660
-
Mm9::chr6:97335192..97335197,+p@chr6:97335192..97335197
+
Mm9::chr6:97778233..97778243,+p@chr6:97778233..97778243
+
Mm9::chr7:133956181..133956200,+p4@Fam57b
Mm9::chr7:137768128..137768136,+p@chr7:137768128..137768136
+
Mm9::chr7:137768139..137768154,+p@chr7:137768139..137768154
+
Mm9::chr7:18761819..18761824,+p1@Igfl3
Mm9::chr7:18830734..18830751,+p2@Mill1
Mm9::chr7:20044584..20044602,-p@chr7:20044584..20044602
-
Mm9::chr7:20169703..20169713,-p@chr7:20169703..20169713
-
Mm9::chr7:27905825..27905859,+p@chr7:27905825..27905859
+
Mm9::chr7:52810285..52810292,+p9@Hsd17b14
Mm9::chr7:55913443..55913483,-p@chr7:55913443..55913483
-
Mm9::chr7:55947129..55947144,-p@chr7:55947129..55947144
-
Mm9::chr7:55947146..55947151,-p@chr7:55947146..55947151
-
Mm9::chr7:55947155..55947177,-p@chr7:55947155..55947177
-
Mm9::chr7:55947194..55947199,-p@chr7:55947194..55947199
-
Mm9::chr8:19225474..19225482,+p1@Defb6
Mm9::chr8:64079078..64079080,+p@chr8:64079078..64079080
+
Mm9::chr8:70682388..70682415,-p@chr8:70682388..70682415
-
Mm9::chr8:88732929..88732933,+p@chr8:88732929..88732933
+
Mm9::chr8:98013921..98013958,-p@chr8:98013921..98013958
-
Mm9::chr9:71432394..71432398,+p@chr9:71432394..71432398
+
Mm9::chr9:75025479..75025499,+p@chr9:75025479..75025499
+
Mm9::chr9:83736739..83736750,+p@chr9:83736739..83736750
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005882intermediate filament0.0498626448881202
GO:0045111intermediate filament cytoskeleton0.0498626448881202
GO:0043071positive regulation of non-apoptotic programmed cell death0.0498626448881202
GO:0043070regulation of non-apoptotic programmed cell death0.0498626448881202
GO:0048733sebaceous gland development0.0498626448881202
GO:0001949sebaceous gland cell differentiation0.0498626448881202
GO:0016244non-apoptotic programmed cell death0.0498626448881202



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
zone of skin1.60e-625
skin epidermis1.60e-625
skin of body1.60e-625
integument1.60e-625
surface1.60e-625
outer epithelium1.60e-625
integumental system1.60e-625
enveloping layer of ectoderm1.60e-625
surface structure1.17e-2022


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10
MA0004.10.0201013
MA0006.10.000387989
MA0007.10.14486
MA0009.10.963816
MA0014.11.1031e-11
MA0017.10.257499
MA0019.10.252936
MA0024.10.27793
MA0025.10.383317
MA0027.11.29143
MA0028.11.70477e-05
MA0029.11.10674
MA0030.10.257512
MA0031.10.212696
MA0038.10.548432
MA0040.10.645791
MA0041.10.0648389
MA0042.10.346381
MA0043.10.23219
MA0046.10.703389
MA0048.10.0021016
MA0050.10.3837
MA0051.10.817447
MA0052.10.665401
MA0055.10.0216799
MA0056.10
MA0057.10.000203154
MA0058.10.0226899
MA0059.10.0575344
MA0060.10.00953295
MA0061.10.789105
MA0063.10
MA0066.10.100423
MA0067.10.178812
MA0068.10.00482638
MA0069.10.666231
MA0070.11.00113
MA0071.10.381104
MA0072.10.622324
MA0073.10
MA0074.10.027465
MA0076.15.92654e-05
MA0077.10.313025
MA0078.10.156973
MA0081.10.462032
MA0083.10.499894
MA0084.10.403642
MA0087.10.42527
MA0088.14.82587e-06
MA0089.10
MA0090.10.977945
MA0091.10.830862
MA0092.10.192423
MA0093.10.00677108
MA0095.10
MA0098.10
MA0100.10.0237765
MA0101.10.546621
MA0103.10.406677
MA0105.10.0139461
MA0106.10.492213
MA0107.10.504303
MA0108.210.0098
MA0109.10
MA0111.10.136587
MA0113.10.251635
MA0114.10.102403
MA0115.10.06616
MA0116.10.0214933
MA0117.10.204228
MA0119.10.00517796
MA0122.10.222867
MA0124.11.43536
MA0125.11.20614
MA0130.10
MA0131.10.00797884
MA0132.10
MA0133.10
MA0135.10.568267
MA0136.10.00985499
MA0139.10.000486025
MA0140.10.54438
MA0141.10.50337
MA0142.10.630044
MA0143.10.15209
MA0144.10.0700231
MA0145.10.000181055
MA0146.19.90277e-06
MA0147.10.00344125
MA0148.10.117141
MA0149.10.000293036
MA0062.21.62395e-07
MA0035.21.03032
MA0039.22.18242e-12
MA0138.20.920145
MA0002.21.44626
MA0137.20.256041
MA0104.20.00106386
MA0047.20.110178
MA0112.20.00492797
MA0065.20.000821024
MA0150.10.0804206
MA0151.10
MA0152.10.775704
MA0153.10.286845
MA0154.10.0290827
MA0155.10.000119572
MA0156.10.00485841
MA0157.10.321685
MA0158.10
MA0159.10.0221337
MA0160.10.325359
MA0161.10
MA0162.11.68714e-12
MA0163.16.25849e-14
MA0164.10.462697
MA0080.20.00351461
MA0018.20.0388413
MA0099.21.57831
MA0079.20
MA0102.20.445208
MA0258.10.116382
MA0259.10.00085548
MA0442.10
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