FFCP PHASE1:Hg19::chr1:209825932..209825936,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=3914 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6490 | |||
|TSSclassifier=weak | |||
|UniProt=Q13751 | |||
|association_with_transcript=-112bp_to_NM_000228,uc001hhh.2,uc009xcp.1,uc010psl.1_5end | |||
|coexpression_cluster_id=C226 | |||
|description=CAGE_peak_10_at_LAMB3_5end | |||
|id=chr1:209825932..209825936,- | |||
|ontology_enrichment_celltype=CL:0002076!5.11e-35!43;CL:0002368!2.31e-32!13;CL:0000066!5.31e-27!254;CL:0000223!5.97e-24!59;CL:0002202!2.60e-19!9;CL:0002632!2.60e-19!9;CL:0002159!2.83e-17!13;CL:0002328!4.03e-12!3;CL:0000068!7.77e-12!3;CL:0000069!7.77e-12!3;CL:0000307!7.77e-12!3;CL:0000377!7.77e-12!3;CL:0002621!8.36e-12!3;CL:0002251!9.23e-12!21;CL:0002166!9.31e-12!3;CL:0002077!4.05e-11!33;CL:0000220!6.54e-11!246;CL:0002321!9.38e-11!248;CL:0000244!5.49e-09!4;CL:0000731!5.49e-09!4;CL:0000575!1.39e-08!2;CL:0000063!9.59e-08!578 | |||
|ontology_enrichment_celltype_v019=CL:0002368;6.28e-37;13!CL:0002159;4.89e-34;14!CL:0002328;2.11e-30;3!CL:0000575;7.01e-21;2!CL:0002076;3.45e-18;42!CL:0002202;3.90e-18;9!CL:0002632;3.90e-18;9!CL:0002166;2.95e-14;3!CL:0002621;2.95e-14;3!CL:0002077;4.36e-12;34!CL:0000362;1.50e-10;9!CL:0000312;6.43e-09;5!CL:0000240;1.42e-07;6!CL:0000311;1.42e-07;6!CL:0000079;1.42e-07;6!CL:0000237;1.42e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,7.66e-37,13;CL:0002159,5.87e-34,14;CL:0002328,2.24e-30,3;CL:0002076,2.51e-22,42;CL:0000575,1.05e-20,2;CL:0002202,4.10e-18,9;CL:0002632,4.10e-18,9;CL:0000223,8.66e-16,58;CL:0002166,2.59e-14,3;CL:0002621,4.42e-14,3;CL:0002077,1.25e-13,34;CL:0000066,3.85e-13,253;CL:0000362,1.58e-10,9;CL:0002321,3.39e-10,250;CL:0000312,5.72e-09,5;CL:0000240,1.29e-07,6;CL:0000311,1.29e-07,6;CL:0000079,1.29e-07,6;CL:0000237,1.29e-07,6;CL:0000036,1.29e-07,6;CL:0000357,1.29e-07,6;CL:0000114,1.29e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000223;4.12e-08;58!CL:0000357;1.42e-07;6!CL:0000114;1.42e-07;6 | |||
|ontology_enrichment_disease=DOID:1749!1.27e-10!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!2.22e-12!169;UBERON:0000925!2.22e-12!169;UBERON:0006595!2.22e-12!169;UBERON:0004815!4.03e-12!3;UBERON:0002031!4.03e-12!3;UBERON:0007196!4.97e-12!14;UBERON:0001558!4.97e-12!14;UBERON:0001949!8.36e-12!3;UBERON:0001004!9.36e-12!72;UBERON:0000065!4.40e-10!53;UBERON:0005911!1.16e-09!82;UBERON:0005153!2.15e-09!37;UBERON:0002185!3.47e-09!4;UBERON:0005157!5.36e-09!51;UBERON:0001708!6.44e-09!4;UBERON:0001704!6.44e-09!4;UBERON:0004807!8.65e-09!28;UBERON:0005178!1.21e-08!34;UBERON:0002224!1.21e-08!34;UBERON:0005181!2.43e-08!35;UBERON:0000365!2.92e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;2.11e-30;3!UBERON:0002031;2.11e-30;3!UBERON:0002185;1.61e-18;5!UBERON:0001949;2.95e-14;3!UBERON:0000485;2.10e-13;7!UBERON:0004807;3.14e-11;22!UBERON:0007196;5.61e-11;15!UBERON:0001558;5.61e-11;15!UBERON:0001708;6.31e-11;4!UBERON:0000964;6.31e-11;4!UBERON:0010409;6.31e-11;4!UBERON:0008895;6.31e-11;4!UBERON:0011159;6.43e-09;5!UBERON:0000065;1.87e-08;44!UBERON:0000486;4.85e-08;12!UBERON:0010371;1.16e-07;31!UBERON:0005911;3.46e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,2.24e-30,3;UBERON:0002031,2.24e-30,3;UBERON:0002185,1.66e-18,5;UBERON:0001949,4.42e-14,3;UBERON:0001708,5.72e-11,4;UBERON:0008895,5.72e-11,4;UBERON:0007196,5.78e-11,15;UBERON:0001558,5.78e-11,15;UBERON:0000964,7.72e-11,4;UBERON:0010409,7.72e-11,4;UBERON:0004348,7.72e-11,4;UBERON:0005427,7.72e-11,4;UBERON:0000485,1.53e-10,9;UBERON:0005157,8.82e-10,47;UBERON:0001004,1.08e-09,74;UBERON:0011159,5.95e-09,5;UBERON:0004807,9.53e-09,28;UBERON:0003102,1.28e-08,99;UBERON:0000065,2.22e-08,54;UBERON:0010188,1.34e-07,6;UBERON:0002539,1.34e-07,6;UBERON:0008816,1.34e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,1.8072355126695,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82147644146271,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15956511897978,0.818238361772504,1.72082757233402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,1.86575485194663,0,1.3068766413512,0.555530670951178,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87467667973554,1.17587489739202,0.425325291727159,0.358234090811393,0,1.91691339582606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20557117333613,0.828728900423067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,1.66215201785745,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,0.661139661443912,1.72971060628596,1.65896526242959,1.4162089319777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865999014529609,0.670302275535787,2.17781969722645,0,0.86101074534246,0,0.886860307073351,1.83778720165568,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0.614321404198464,0,0,0,0,0,0,0,0,0,0,0,0.359473404589307,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548167698587004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0.279759015438889,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0,0,0.231051332300676,0,0,0,0,0,0,0,0,0.591424344868181,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0.401206833445841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p10@LAMB3 | |||
}} |
Revision as of 23:58, 10 January 2014
Short description: | p10@LAMB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_LAMB3_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | -112bp_to_NM_000228, uc001hhh.2, uc009xcp.1, uc010psl.1_5end |
EntrezGene: | LAMB3 |
HGNC: | 6490 |
UniProt: | Q13751 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 7.66e-37 | 13 |
general ecto-epithelial cell | 5.87e-34 | 14 |
bronchial epithelial cell | 2.24e-30 | 3 |
endo-epithelial cell | 2.51e-22 | 42 |
corneal epithelial cell | 1.05e-20 | 2 |
epithelial cell of tracheobronchial tree | 4.10e-18 | 9 |
epithelial cell of lower respiratory tract | 4.10e-18 | 9 |
endodermal cell | 8.66e-16 | 58 |
epithelial cell of Malassez | 2.59e-14 | 3 |
gingival epithelial cell | 4.42e-14 | 3 |
ecto-epithelial cell | 1.25e-13 | 34 |
epithelial cell | 3.85e-13 | 253 |
epidermal cell | 1.58e-10 | 9 |
embryonic cell | 3.39e-10 | 250 |
keratinocyte | 5.72e-09 | 5 |
stratified squamous epithelial cell | 1.29e-07 | 6 |
keratin accumulating cell | 1.29e-07 | 6 |
stratified epithelial cell | 1.29e-07 | 6 |
keratinizing barrier epithelial cell | 1.29e-07 | 6 |
epithelial fate stem cell | 1.29e-07 | 6 |
stratified epithelial stem cell | 1.29e-07 | 6 |
surface ectodermal cell | 1.29e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 2.24e-30 | 3 |
epithelium of bronchus | 2.24e-30 | 3 |
bronchus | 1.66e-18 | 5 |
gingival epithelium | 4.42e-14 | 3 |
jaw skeleton | 5.72e-11 | 4 |
splanchnocranium | 5.72e-11 | 4 |
tracheobronchial tree | 5.78e-11 | 15 |
lower respiratory tract | 5.78e-11 | 15 |
cornea | 7.72e-11 | 4 |
eye surface | 7.72e-11 | 4 |
optic eminence | 7.72e-11 | 4 |
corneal primordium | 7.72e-11 | 4 |
simple columnar epithelium | 1.53e-10 | 9 |
epithelial fold | 8.82e-10 | 47 |
respiratory system | 1.08e-09 | 74 |
primary subdivision of cranial skeletal system | 5.95e-09 | 5 |
respiratory system epithelium | 9.53e-09 | 28 |
surface structure | 1.28e-08 | 99 |
respiratory tract | 2.22e-08 | 54 |
protuberance | 1.34e-07 | 6 |
pharyngeal arch | 1.34e-07 | 6 |
embryonic head | 1.34e-07 | 6 |