FFCP PHASE1:Hg19::chr11:394263..394275,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11187 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9025 | |||
|TSSclassifier=strong | |||
|UniProt=E9PK71 | |||
|association_with_transcript=20bp_to_ENST00000531857,ENST00000533069_5end | |||
|coexpression_cluster_id=C511 | |||
|description=CAGE_peak_5_at_PKP3_5end | |||
|id=chr11:394263..394275,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.56e-37!254;CL:0002076!9.71e-25!43;CL:0000223!5.77e-22!59;CL:0002251!3.34e-14!21;CL:0002368!1.96e-09!13;CL:0002159!1.96e-08!13;CL:0000082!1.98e-08!19 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.33e-16;42!CL:0002251;2.41e-14;20!CL:0002327;1.50e-13;4!CL:0002621;1.11e-10;3!CL:0002328;1.79e-10;3!CL:0002159;2.57e-08;14!CL:0000575;8.56e-08;2!CL:0000349;1.25e-07;19!CL:0002536;4.23e-07;2!CL:0000622;7.32e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.80e-22,253;CL:0002076,2.35e-20,42;CL:0000223,2.80e-15,58;CL:0002251,2.13e-14,20;CL:0002327,1.96e-13,4;CL:0002621,6.49e-11,3;CL:0002328,1.22e-10,3;CL:0002159,2.22e-08,14;CL:0000575,6.34e-08,2;CL:0000349,1.29e-07,19;CL:0002536,5.46e-07,2;CL:0000622,6.79e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000223;1.00e-08;58!UBERON:0008947;3.15e-07;29 | |||
|ontology_enrichment_disease=DOID:305!2.82e-36!106;DOID:0050687!3.13e-28!143;DOID:162!1.71e-15!235;DOID:14566!1.21e-14!239;DOID:1749!7.10e-13!14;DOID:299!1.06e-09!25 | |||
|ontology_enrichment_disease_v019=DOID:5093;9.99e-08;4!DOID:1612;9.99e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.90e-09,106;DOID:5093,1.72e-07,4;DOID:1612,1.72e-07,4;DOID:0050687,8.03e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.37e-30!169;UBERON:0000925!6.37e-30!169;UBERON:0006595!6.37e-30!169;UBERON:0001004!2.23e-25!72;UBERON:0001007!3.81e-23!155;UBERON:0001555!3.81e-23!155;UBERON:0007026!3.81e-23!155;UBERON:0004921!3.44e-20!129;UBERON:0004185!3.44e-20!129;UBERON:0000077!1.24e-19!130;UBERON:0000065!1.91e-19!53;UBERON:0000072!7.06e-18!46;UBERON:0001041!4.75e-16!98;UBERON:0008947!1.52e-15!38;UBERON:0003258!1.52e-15!38;UBERON:0001737!4.28e-11!9;UBERON:0000166!6.48e-11!21;UBERON:0001557!1.62e-10!19;UBERON:0005153!2.07e-10!37;UBERON:0000161!3.32e-10!35;UBERON:0005157!6.18e-10!51;UBERON:0004807!1.01e-09!28;UBERON:0005911!1.19e-09!82;UBERON:0005631!3.02e-09!14;UBERON:0000158!3.02e-09!14;UBERON:0004802!1.98e-08!19;UBERON:0000115!1.98e-08!19;UBERON:0005178!2.40e-08!34;UBERON:0002224!2.40e-08!34;UBERON:0000063!4.01e-08!97;UBERON:0000165!5.83e-08!28;UBERON:0000930!5.83e-08!28;UBERON:0005181!6.00e-08!35;UBERON:0000064!2.36e-07!219;UBERON:0000344!2.67e-07!12;UBERON:0001044!4.62e-07!6;UBERON:0003293!4.62e-07!6;UBERON:0003294!4.62e-07!6;UBERON:0010047!4.62e-07!6;UBERON:0000167!4.62e-07!6;UBERON:0000915!4.70e-07!52;UBERON:0002048!8.96e-07!22;UBERON:0000117!8.96e-07!22;UBERON:0000171!8.96e-07!22;UBERON:0000170!8.96e-07!22;UBERON:0005597!8.96e-07!22;UBERON:0000118!8.96e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.61e-21;9!UBERON:0001557;6.61e-21;9!UBERON:0001911;1.50e-13;4!UBERON:0003929;2.12e-11;7!UBERON:0000485;2.94e-11;7!UBERON:0001949;1.11e-10;3!UBERON:0004815;1.79e-10;3!UBERON:0002031;1.79e-10;3!UBERON:0000072;1.94e-10;37!UBERON:0000065;2.47e-10;44!UBERON:0003350;6.21e-10;8!UBERON:0000161;9.85e-10;19!UBERON:0000166;9.85e-10;19!UBERON:0001004;1.07e-09;65!UBERON:0005631;6.48e-08;10!UBERON:0000158;6.48e-08;10!UBERON:0000165;9.29e-08;28!UBERON:0000305;1.06e-07;7!UBERON:0005911;6.58e-07;36!UBERON:0000344;7.22e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.91e-21,9;UBERON:0001004,4.42e-17,74;UBERON:0004119,1.43e-14,160;UBERON:0000925,1.43e-14,160;UBERON:0006595,1.43e-14,160;UBERON:0001911,1.96e-13,4;UBERON:0005333,1.96e-13,4;UBERON:0008425,1.96e-13,4;UBERON:0005311,1.96e-13,4;UBERON:0001007,4.12e-12,145;UBERON:0001555,4.12e-12,145;UBERON:0007026,4.12e-12,145;UBERON:0001557,9.80e-12,19;UBERON:0008947,3.09e-11,38;UBERON:0003258,3.09e-11,38;UBERON:0001949,6.49e-11,3;UBERON:0005631,1.04e-10,14;UBERON:0000158,1.04e-10,14;UBERON:0004815,1.22e-10,3;UBERON:0002031,1.22e-10,3;UBERON:0000166,2.12e-10,22;UBERON:0000072,4.68e-10,47;UBERON:0003350,5.19e-10,8;UBERON:0000065,8.41e-10,54;UBERON:0004921,2.27e-09,118;UBERON:0000485,1.01e-08,9;UBERON:0001041,1.15e-08,87;UBERON:0000161,1.50e-08,36;UBERON:0000305,1.20e-07,7;UBERON:0005157,1.67e-07,47;UBERON:0000165,1.73e-07,29;UBERON:0000930,1.73e-07,29;UBERON:0005153,6.69e-07,37;UBERON:0000344,7.20e-07,20 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,2.09340350391728,1.09220686065086,1.58260186937072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.27479102031034,1.8072355126695,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91436230634034,2.59549109949101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61656431285521,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.86521706326594,1.90922284413584,2.58124135850103,0.121973706129595,0.132529768321485,0.232387885739037,0,0,0,0,0,0,0,0,1.0647612003586,2.19160097101532,1.44606617930089,1.98529150918309,1.74303555273925,1.18635309555548,1.75280700608214,0.98110732562673,1.53898862778556,0,0,0,0,0,0,0,0,1.22988438543114,0,2.41450627898976,4.49607013030478,0.904760751704678,0.277765335475589,0,0,0,0,0,0,0,0,2.37061319387782,0.858486162094873,0,0,0,2.81201501960331,0.503946384596579,0.708875486211932,1.34337784054272,3.48760726216754,3.06706143332169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.57818928615649,0,2.41912234663744,0,0.153461973288062,0,0,0,0,0,0,0.177561725313127,0,0,0,1.20859449591622,1.60405176242628,0.920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,3.25030123018261,0,0.096670718292122,0.154048617114644,0,0,0,0,0,0,0.991709492165869,0.960950336825531,2.80747967488085,0.809262246844399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,1.34060455107157,0,0.564862804660675,0.86101074534246,0,1.7737206141467,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.146508179271894,0,0,0,4.7748896947538,0.890894042497916,2.45728561679386,0,0,0,0.16480387422676,0.211125408127993,0,0,0,0,0,0,0.449341755736634,0,0,0,0,0,0,0,0,1.04171104434093,1.31189999994294,0,7.16898724198648,0.254253650292766,4.49136595359079,0.344743373241465,0,0,0,0,0,0,0,0,0.32681539055697,2.09135616417905,0.615602068030377,0,1.84451123510448,0.269272933229316,3.15077378573823,0.957003479195758,0.0915975934018623,1.5991043280559,0,0,0,0.676786981851542,0.392125068635479,0.503464760927528,0.75901493089674,0,0,0.326465616318295,1.41353071433941,0,1.99052386215701,0.176915129006678,0.611030144933625,0,0,0,0,0,0,0,0.978323094660449,0.728341138602278,0.394584402849391,0,0,0,0,0,0,0,0.313932918407225,0,0.853828638089378,0,0.173559738335131,0.881931576729399,1.21882889212564,0.34945333648406,0,0.387025325156341,0.584714536689484,0.739039113478883,2.42472541221049,0,0,0,0,0,2.93327074102205,0.0801588202515337,0.213452994739353,0.599428828746391,0.288180834308212,0,0,0,0,0.707082103850386,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0,0,0,0,0.0787831823072236,0.329663433524666,0.337017719270924,0,0,0,0,0,0.137539436597234,0.415440338029185,0,1.5476039091159,0,3.35434687599266,0,0,0.105600336519406,0.179287339332845,0.575745591958336,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,4.46838880439127,0,0.5013797880454,0,0,0,0,0,0,0,0,0,0,0.499921631848426,0,0,0,0,0.28984205722165,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0.643324774124777,0,0,0.231522474323834,0,0,0,0,0.176689145945881,0.964570191354574,0,0,0,0.303859956177382,0,0,0,0,0,0.983091635014877,0.633936370075881,0,0,0,0.567515953566836,0,0.839277046316667,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17777262201231,0.235939446695481,1.46742878817343,0.115525666150338,0,0,0,0,0,0,2.3571602503328,0.327543835020193,0,0,0,0,0,0,1.09651553371436,0.496211178389294,0,0.638812138197976,0,0,0,0,0.975726071789027,0,0,0,0,0.118193840883968,0,0.235479278551542,0,0.280272163313789,0.913158720509496,0,0,0,0,0,0,0,0.414432328326074,2.7314956335032,3.45629830907046,0.430227358820278,0,0,0,1.14553434272025,0,0,0.559277158988962,0.196300467230486,0.487671699929078,0,0,0,0.971421986118279,0.467878926924211,0.198950775161368,0,0.33883824611688,0,0.905777061400041,0.463044948647668,0.218559560503957,0.940634592723046,0,0.235676547101626,0,0,0,0,0,0,0,0.71421575442263,0.352894871715692,0.320965466756673,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0.109265571963696,0,1.01988829741982,0,0.459474497674225,0,0,0,0,0,0.213233981900981,0.23806443146374,0,0.0620747142958579,0,0,0.202117188958219,1.95945073107265,0.342233301085281,0.404112318087525,0.78894425931944,0.665320713092027,0.244209805832924,0.213454691755431,0,0,0,0,0.813792356631477,0,0,0 | |||
|short_description=p5@PKP3 | |||
}} |
Revision as of 05:47, 11 January 2014
Short description: | p5@PKP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PKP3_5end |
Coexpression cluster: | C511_Placental_Alveolar_Bronchial_amniotic_Gingival_Corneal_Mammary |
Association with transcript: | 20bp_to_ENST00000531857, ENST00000533069_5end |
EntrezGene: | PKP3 |
HGNC: | 9025 |
UniProt: | E9PK71 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.80e-22 | 253 |
endo-epithelial cell | 2.35e-20 | 42 |
endodermal cell | 2.80e-15 | 58 |
epithelial cell of alimentary canal | 2.13e-14 | 20 |
mammary gland epithelial cell | 1.96e-13 | 4 |
gingival epithelial cell | 6.49e-11 | 3 |
bronchial epithelial cell | 1.22e-10 | 3 |
general ecto-epithelial cell | 2.22e-08 | 14 |
corneal epithelial cell | 6.34e-08 | 2 |
extraembryonic cell | 1.29e-07 | 19 |
amniotic epithelial cell | 5.46e-07 | 2 |
acinar cell | 6.79e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
larynx | 5.91e-21 | 9 |
respiratory system | 4.42e-17 | 74 |
endoderm-derived structure | 1.43e-14 | 160 |
endoderm | 1.43e-14 | 160 |
presumptive endoderm | 1.43e-14 | 160 |
mammary gland | 1.96e-13 | 4 |
mammary bud | 1.96e-13 | 4 |
mammary ridge | 1.96e-13 | 4 |
mammary placode | 1.96e-13 | 4 |
digestive system | 4.12e-12 | 145 |
digestive tract | 4.12e-12 | 145 |
primitive gut | 4.12e-12 | 145 |
upper respiratory tract | 9.80e-12 | 19 |
respiratory primordium | 3.09e-11 | 38 |
endoderm of foregut | 3.09e-11 | 38 |
gingival epithelium | 6.49e-11 | 3 |
extraembryonic membrane | 1.04e-10 | 14 |
membranous layer | 1.04e-10 | 14 |
lower respiratory tract epithelium | 1.22e-10 | 3 |
epithelium of bronchus | 1.22e-10 | 3 |
oral opening | 2.12e-10 | 22 |
segment of respiratory tract | 4.68e-10 | 47 |
epithelium of mucosa | 5.19e-10 | 8 |
respiratory tract | 8.41e-10 | 54 |
subdivision of digestive tract | 2.27e-09 | 118 |
simple columnar epithelium | 1.01e-08 | 9 |
foregut | 1.15e-08 | 87 |
orifice | 1.50e-08 | 36 |
amnion | 1.20e-07 | 7 |
epithelial fold | 1.67e-07 | 47 |
mouth | 1.73e-07 | 29 |
stomodeum | 1.73e-07 | 29 |
epithelial bud | 6.69e-07 | 37 |
mucosa | 7.20e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.90e-09 | 106 |
thoracic cancer | 1.72e-07 | 4 |
breast cancer | 1.72e-07 | 4 |
cell type cancer | 8.03e-07 | 143 |