FFCP PHASE1:Hg19::chr13:28494109..28494122,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3651 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6107 | |||
|TSSclassifier=strong | |||
|UniProt=P52945 | |||
|association_with_transcript=-34bp_to_ENST00000381033_5end | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_2_at_PDX1_5end | |||
|id=chr13:28494109..28494122,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002178;6.58e-14;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,8.02e-14,3 | |||
|ontology_enrichment_development_v019=UBERON:0006242;4.67e-11;1 | |||
|ontology_enrichment_disease=DOID:3119!1.53e-19!14;DOID:305!1.17e-14!106;DOID:0050687!2.49e-11!143;DOID:162!9.21e-11!235;DOID:14566!2.29e-10!239;DOID:299!3.31e-10!25;DOID:3493!1.87e-08!2;DOID:4929!4.31e-08!2 | |||
|ontology_enrichment_disease_v019=DOID:3119;1.60e-11;14!DOID:0060060;1.69e-11;1!DOID:0060061;1.69e-11;1!DOID:8691;1.69e-11;1!DOID:299;1.09e-09;25 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,1.60e-11,1;DOID:0060061,1.60e-11,1;DOID:8691,1.60e-11,1;DOID:3119,1.77e-11,14;DOID:299,1.07e-09,25 | |||
|ontology_enrichment_uberon=UBERON:0005409!2.23e-19!35;UBERON:0000160!2.53e-16!27;UBERON:0002108!1.32e-14!14;UBERON:0002294!1.63e-12!7;UBERON:0001173!1.63e-12!7;UBERON:0004912!1.63e-12!7;UBERON:0001007!5.80e-10!155;UBERON:0001555!5.80e-10!155;UBERON:0007026!5.80e-10!155;UBERON:0004921!7.38e-10!129;UBERON:0004185!7.38e-10!129;UBERON:0002114!1.22e-09!12;UBERON:0002075!3.75e-09!18;UBERON:0004119!1.24e-08!169;UBERON:0000925!1.24e-08!169;UBERON:0006595!1.24e-08!169;UBERON:0002394!2.63e-08!4;UBERON:0003928!2.63e-08!4;UBERON:0003350!4.66e-07!5;UBERON:0000077!5.90e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;2.43e-20;22!UBERON:0002108;1.77e-18;4!UBERON:0000160;9.62e-14;17!UBERON:0004921;2.93e-11;33!UBERON:0002331;6.68e-10;10!UBERON:0000945;1.04e-08;5!UBERON:0010039;1.04e-08;5!UBERON:0000178;9.34e-07;15!UBERON:0000179;9.34e-07;15!UBERON:0000463;9.34e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,1.77e-18,4;UBERON:0005409,6.79e-18,25;UBERON:0000160,9.49e-14,17;UBERON:0002331,6.68e-10,10;UBERON:0000358,6.68e-10,10;UBERON:0000307,6.68e-10,10;UBERON:0000091,6.68e-10,10;UBERON:0000087,6.68e-10,10;UBERON:0007010,6.68e-10,10;UBERON:0007806,6.68e-10,10;UBERON:0008780,6.68e-10,10;UBERON:0005728,6.68e-10,10;UBERON:0000178,9.34e-07,15;UBERON:0000179,9.34e-07,15;UBERON:0000463,9.34e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49712432326576,0,0.242721043499027,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,17.1314268540908,0,2.70786572014353,0,0.179736702294654,0.358042349351218,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0,0,0.344743373241465,0,0.347249989866585,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.05888191277855,0,3.89213283814692,0,22.5356057797273,23.2300205219425,14.3058070822474,0,0,0,0,0,0,0,12.0990716048664,0,0,0.901940516486955,0.207376382794494,0,0.330991955875499,0.313932918407225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391102765469606,0,1.28071796843612,0,1.29681375438695,0.229073192331831,4.46146994441108,0,0.248505071130865,0,0,0.104602846312333,0,0,0,0,0,0,9.20105739977601,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.59939500103664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0,0,4.68908406739856,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223710863595585,1.07965256976767,0.487671699929078,0,0,0,0,0,0,0.237840181555137,0.22589216407792,0,0,1.31196068783506,3.0598338470554,0.470317296361523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0.407016343054873,0,0,1.43720323370539,0,0,0,0,0,0 | |||
|short_description=p2@PDX1 | |||
}} |
Revision as of 17:05, 11 January 2014
Short description: | p2@PDX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PDX1_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | -34bp_to_ENST00000381033_5end |
EntrezGene: | PDX1 |
HGNC: | 6107 |
UniProt: | P52945 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 8.02e-14 | 3 |
Ontology term | p-value | n |
---|---|---|
small intestine | 1.77e-18 | 4 |
gastrointestinal system | 6.79e-18 | 25 |
intestine | 9.49e-14 | 17 |
umbilical cord | 6.68e-10 | 10 |
blastocyst | 6.68e-10 | 10 |
blastula | 6.68e-10 | 10 |
bilaminar disc | 6.68e-10 | 10 |
inner cell mass | 6.68e-10 | 10 |
cleaving embryo | 6.68e-10 | 10 |
connecting stalk | 6.68e-10 | 10 |
inner cell mass derived epiblast | 6.68e-10 | 10 |
extraembryonic mesoderm | 6.68e-10 | 10 |
blood | 9.34e-07 | 15 |
haemolymphatic fluid | 9.34e-07 | 15 |
organism substance | 9.34e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 1.60e-11 | 1 |
cutaneous T cell lymphoma | 1.60e-11 | 1 |
mycosis fungoides | 1.60e-11 | 1 |
gastrointestinal system cancer | 1.77e-11 | 14 |
adenocarcinoma | 1.07e-09 | 25 |