FFCP PHASE1:Hg19::chr19:38042335..38042352,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=163255 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25331 | |||
|TSSclassifier=strong | |||
|UniProt=Q8NDQ6 | |||
|association_with_transcript=27bp_to_NM_152606,uc002ogo.2,uc002ogp.2,uc002ogq.2_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_4_at_ZNF540_5end | |||
|id=chr19:38042335..38042352,+ | |||
|ontology_enrichment_celltype=CL:0000784!2.93e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000039;7.45e-13;7!CL:0000586;7.45e-13;7!CL:0000222;1.05e-10;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,5.85e-13,7;CL:0000586,5.85e-13,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.52e-24;10!UBERON:0005564;4.52e-24;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;4.15e-07;22!DOID:2994;4.15e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.49e-07,22;DOID:2994,3.49e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000369!2.06e-08!4;UBERON:0002435!2.06e-08!4;UBERON:0000204!2.06e-08!4;UBERON:0010082!2.06e-08!4;UBERON:0000073!3.23e-08!94;UBERON:0001016!3.23e-08!94;UBERON:0002780!6.95e-08!41;UBERON:0001890!6.95e-08!41;UBERON:0006240!6.95e-08!41;UBERON:0003080!1.30e-07!42;UBERON:0000473!3.25e-07!8;UBERON:0005743!4.02e-07!86;UBERON:0005383!4.24e-07!3;UBERON:0005382!4.24e-07!3;UBERON:0001017!4.90e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;4.37e-30;8!UBERON:0003135;6.99e-22;11!UBERON:0000991;2.02e-11;21!UBERON:0003101;6.78e-11;22!UBERON:0000079;6.78e-11;22!UBERON:0001874;1.05e-10;1!UBERON:0000922;5.91e-10;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.05e-30,8;UBERON:0003135,5.40e-22,11;UBERON:0000991,1.77e-11,21;UBERON:0009196,1.77e-11,21;UBERON:0009117,1.77e-11,21;UBERON:0005564,1.77e-11,21;UBERON:0004176,5.98e-11,22;UBERON:0003101,5.98e-11,22;UBERON:0000079,5.98e-11,22;UBERON:0001874,1.33e-10,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0.587200878669695,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17447437874188,1.91136614062614,0,0.560508562981536,0,0,0,0.411202997999018,0,0,0,0,0,0.294605907474837,0.221533894583621,0,0,0,0,0,0,0.296573126324121,0.535081656179426,0,0,0.383220493601921,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,3.20898734969396,0,0,0,0,0,1.19245312152671,0.571994910780128,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0.496971951695318,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0.149448680551801,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0.30648779579902,0.150238058906597,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.651616610620649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03664057770386,0.576479813667846,0.88369703398466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,1.30139853857622,0.773288812777695,0.167516265334349,0.637938751653163,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0.192190067365106,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,3.99227596002388,0,0,0,0,0,0,0,0.291604613383254,0,0.885741385813839,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,3.0607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0.449947783103001,0,0.121499113316049,0,0,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0.0620964029413835,0,0,0,0,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,0.770479321629213,0,0,0,0,0.734210113519403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,1.79052119825112,0.323474434190045,0,0.54604819096007,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0,0,1.51243017733031,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0.0675375846183947,0,0,0.0634158101939068,2.18789923607288,0,0,0,0,2.14280734351315,0.336283722218824,0,0.227662191351298,0,0,0,0,0,0,0,0,1.25692471932802,0,0,0,0,0.0714765441766563,0,0.23248285073625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0,2.18175345170189,0,0,0,0.432626562123789,0,0,0.380095503034311,1.52983244612973,1.60330443159336,6.61643276650883,0,4.6225005913126,11.7904217268719,0,0,0,0.23806443146374,0,0.186224142887574,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@ZNF540 | |||
}} |
Revision as of 23:03, 20 January 2014
Short description: | p4@ZNF540 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_4_at_ZNF540_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 27bp_to_NM_152606, uc002ogo.2, uc002ogp.2, uc002ogq.2_5end |
EntrezGene: | ZNF540 |
HGNC: | 25331 |
UniProt: | Q8NDQ6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 5.85e-13 | 7 |
germ cell | 5.85e-13 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 3.05e-30 | 8 |
male reproductive organ | 5.40e-22 | 11 |
gonad | 1.77e-11 | 21 |
indifferent external genitalia | 1.77e-11 | 21 |
indifferent gonad | 1.77e-11 | 21 |
gonad primordium | 1.77e-11 | 21 |
external genitalia | 5.98e-11 | 22 |
male organism | 5.98e-11 | 22 |
male reproductive system | 5.98e-11 | 22 |
putamen | 1.33e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.49e-07 | 22 |
germ cell cancer | 3.49e-07 | 22 |