FFCP PHASE1:Hg19::chr21:47421929..47421942,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1291 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2211 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=-460bp_to_ENST00000486023,uc002zhw.1_5end | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_19_at_COL6A1_5end | |||
|id=chr21:47421929..47421942,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.39e-34!180;CL:0000057!9.10e-27!75;CL:0002620!1.41e-12!23;CL:0000048!2.59e-12!430;CL:0000680!9.38e-12!57;CL:0000056!9.38e-12!57;CL:0000355!9.38e-12!57;CL:0000183!1.22e-11!59;CL:0000723!1.65e-11!436;CL:0000034!8.61e-11!444;CL:0000187!9.71e-11!54;CL:0000393!3.69e-09!60;CL:0000211!3.69e-09!60;CL:0002570!2.13e-08!8;CL:0000499!6.63e-08!27;CL:0000192!2.82e-07!42;CL:0000514!2.82e-07!42;CL:0002320!7.35e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0002570;1.34e-21;8!CL:0000499;2.02e-12;28!CL:0000135;6.49e-10;3!CL:0000388;6.49e-10;3!CL:0002521;1.04e-09;3!CL:0000632;2.53e-09;3!CL:0000134;9.60e-09;55!CL:0000327;1.82e-08;15!CL:0000723;4.03e-08;61!CL:0000048;5.74e-08;58!CL:0000138;7.82e-08;6!CL:0002575;2.10e-07;2!CL:0000034;4.61e-07;69!CL:0002320;5.29e-07;188!CL:0002549;6.89e-07;2!CL:0002583;6.89e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002570,4.38e-22,8;CL:0000057,2.90e-16,76;CL:0002320,8.72e-14,361;CL:0000499,2.65e-12,28;CL:0000048,2.89e-12,427;CL:0000723,6.73e-12,433;CL:0000034,2.00e-11,441;CL:0000134,2.05e-10,354;CL:0000135,5.57e-10,3;CL:0000388,5.57e-10,3;CL:0002521,9.52e-10,3;CL:0000632,4.17e-09,3;CL:0000219,1.96e-08,386;CL:0000327,3.23e-08,15;CL:0000058,1.35e-07,6;CL:0000138,1.35e-07,6;CL:0002575,1.70e-07,2;CL:0002583,3.66e-07,2;CL:0002549,3.77e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.04e-16!83;UBERON:0002329!1.04e-16!83;UBERON:0003077!1.04e-16!83;UBERON:0003059!1.04e-16!83;UBERON:0007282!1.04e-16!83;UBERON:0009618!1.04e-16!83;UBERON:0007285!1.04e-16!83;UBERON:0004290!3.04e-14!70;UBERON:0003102!3.25e-12!95;UBERON:0000486!6.57e-12!82;UBERON:0001134!1.29e-11!61;UBERON:0002036!1.29e-11!61;UBERON:0003082!1.29e-11!61;UBERON:0005256!2.60e-11!143;UBERON:0002385!7.92e-11!63;UBERON:0001015!7.92e-11!63;UBERON:0000383!7.92e-11!63;UBERON:0001013!1.06e-10!14;UBERON:0002199!1.48e-10!45;UBERON:0002416!1.48e-10!45;UBERON:0000475!1.36e-09!365;UBERON:0002097!2.14e-07!40;UBERON:0002384!5.04e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.01e-22;14!UBERON:0002072;6.46e-15;5!UBERON:0007846;6.49e-10;3!UBERON:0000043;6.49e-10;3!UBERON:0007845;6.49e-10;3!UBERON:0002190;1.04e-09;3!UBERON:0002384;9.19e-08;198!UBERON:0005629;6.89e-07;2!UBERON:0005358;6.89e-07;2!UBERON:0001886;6.89e-07;2!UBERON:0004086;6.89e-07;2!UBERON:0005282;6.89e-07;2!UBERON:0005281;6.89e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001013,3.95e-23,14;UBERON:0002072,3.17e-15,5;UBERON:0002384,8.09e-14,371;UBERON:0007846,5.57e-10,3;UBERON:0000043,5.57e-10,3;UBERON:0007845,5.57e-10,3;UBERON:0002190,9.52e-10,3;UBERON:0005629,3.77e-07,2;UBERON:0005358,3.77e-07,2;UBERON:0001886,3.77e-07,2;UBERON:0004086,3.77e-07,2;UBERON:0005282,3.77e-07,2;UBERON:0005281,3.77e-07,2;UBERON:0003102,4.91e-07,99;UBERON:0002199,6.78e-07,46;UBERON:0002416,6.78e-07,46 | |||
|phase1_expression=0.54503513781167,0.642301571672949,0.281908808191942,0,0.446961094427288,0.872338524100369,2.53299878168311,2.52687949370732,1.30592814099919,0,0,0,0,0.990130823680373,1.65698687863958,2.6893005858071,1.20538905604795,0,0,0.369363174230364,0.816002764977012,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,2.1686349143074,1.00267582127178,1.15877215168659,0,1.45990461090791,0,0.221729397462564,0.087834785693126,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.506522046658319,0.529636723252875,4.30254931123221,0,0.560677600142307,0,0,0.311211035399766,0.404132016209064,0.163461903113459,1.81628913173918,2.30470369792,0.234321431833797,1.5608003841516,0.570471821544449,2.09228152772521,0.469737994575059,0.161872944368132,0.561803226808994,0.61246251376468,0.737005903870608,1.75653827998801,1.18800285728205,1.7308685049499,0,5.03032699271367,0.168336113954066,0.500474079487857,0.277064115484183,0.438977620880838,1.22595118319608,0.751190294532984,0,0.89694817844431,2.34913127700424,0.423863802319124,0.900273288253207,0.515262646192195,0.772921620136887,0.18611685633159,0.675105328965065,0.0974370051611986,0.757301322732344,0.552299391853796,2.90962902273861,2.13005755509969,0.503760491138201,0.67824236924195,0,0,0,0,0.132529768321485,0,0,0,0,0,4.5026865673502,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,2.057870056657,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0.651616610620649,4.15973914111831,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.448524337381443,0,0.4400297149257,0.387815147273333,14.3062578340753,1.690605505112,0.797814349754612,1.04007436911366,0,1.41849132023278,0,1.57275793023962,4.88359444852299,0,1.30294473717494,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0,1.14861935834114,0,0.289562613335158,0.410952645100767,0.358121926479791,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,1.10422342547226,2.00068208423871,0,0.623912584592421,1.24900292158013,0.315404830067869,0.702848489956279,0.902838299183157,0,1.03473071292505,0.664225598535437,0.368738337083406,1.99832313276591,2.74121620447837,3.77457766191941,0,0,0,0,0,0.30239029332968,0.744323423456331,0.153461973288062,1.12264037773229,0.512556597022804,0,0.965123526861645,0,2.46735510084249,1.77561725313127,0.492762936082855,0,1.51073491997947,0,0,0,0.459257792658427,0.728364672026868,2.09799063935079,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0.082509499920588,0,0,0,1.45006077438183,0.154048617114644,0.460511024178389,0.413509717453592,0.859361958946189,0.725083469571143,0.852266274161009,1.15741646340759,0,0,0,0,0,3.46293581513704,0,0.616067160352178,0.532306030317022,0,1.29726953372744,0,0,0.632758849437452,0.38126038784765,0.255897791311334,0.855877976067841,0.636406495851874,0,0.359744915166629,0.823611089208164,0.824686816419805,0,0,0.421258456238981,0.48763373908959,0.974853958525138,0,0.9554993798559,1.1312434556297,3.39024349860728,0,0,0.438450885253763,0.578775534266688,0.655894752046633,0.202910376962704,0,1.12678241012897,0.143411352204052,0,0.35667105148125,0.354761064070598,0.633322905892992,0.658589785919804,0.75894634753143,0.699869440489966,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0.23874448473769,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,1.55519793830904,0,0,0,0.197286811273867,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.230850775511391,0.227884111694002,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0.242780379534093,0.789168805698781,0,0,0.31593289814244,0,0.103688191397247,0,0,0.313932918407225,0,0.284609546029793,0,0,0,0,0.698906672968121,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0,0.799238438328521,0,0,0,0,0,0.471388069233591,0.135904206073614,0.104602846312333,0,0.288950589901519,0,0,0,0,0,0.279282401272254,0,0,0,0.858452096273142,0,0.268733889946905,1.08089965062721,0,0,0,0,0,0,0,0,0.321506296930038,0,0,0,0,0,0,0,0.262272940674991,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0.113312091520126,0.146552233678082,0,0,0,0,0,0,0.628817220398664,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0.124980407962107,0,0,0.705797459094515,0,0,1.34329322598187,1.63599316893057,1.66441758450784,1.51522404220071,1.0062716070103,0.889811221596536,0.228840068396924,0.907385542579434,0.310874401165561,0.147855149989634,0.477890301491107,0.899606224327209,0.465788870628778,0.414706207840855,0.797525143673985,1.5652351854352,0.300515217994437,0,0.406870733204662,0.363697318405119,0.322231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| |||
|short_description=p19@COL6A1 | |||
}} |
Revision as of 14:20, 21 January 2014
Short description: | p19@COL6A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_COL6A1_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -460bp_to_ENST00000486023, uc002zhw.1_5end |
EntrezGene: | COL6A1 |
HGNC: | 2211 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of adipose | 4.38e-22 | 8 |
fibroblast | 2.90e-16 | 76 |
connective tissue cell | 8.72e-14 | 361 |
stromal cell | 2.65e-12 | 28 |
multi fate stem cell | 2.89e-12 | 427 |
somatic stem cell | 6.73e-12 | 433 |
stem cell | 2.00e-11 | 441 |
mesenchymal cell | 2.05e-10 | 354 |
fibrocyte | 5.57e-10 | 3 |
tendon cell | 5.57e-10 | 3 |
subcutaneous fat cell | 9.52e-10 | 3 |
hepatic stellate cell | 4.17e-09 | 3 |
motile cell | 1.96e-08 | 386 |
extracellular matrix secreting cell | 3.23e-08 | 15 |
chondroblast | 1.35e-07 | 6 |
chondrocyte | 1.35e-07 | 6 |
central nervous system pericyte | 1.70e-07 | 2 |
subcutaneous preadipocyte | 3.66e-07 | 2 |
fibroblast of choroid plexus | 3.77e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
adipose tissue | 3.95e-23 | 14 |
hypodermis | 3.17e-15 | 5 |
connective tissue | 8.09e-14 | 371 |
dense regular connective tissue | 5.57e-10 | 3 |
tendon | 5.57e-10 | 3 |
regular connective tissue | 5.57e-10 | 3 |
subcutaneous adipose tissue | 9.52e-10 | 3 |
vascular plexus | 3.77e-07 | 2 |
ventricle of nervous system | 3.77e-07 | 2 |
choroid plexus | 3.77e-07 | 2 |
brain ventricle | 3.77e-07 | 2 |
ventricular system of brain | 3.77e-07 | 2 |
ventricular system of central nervous system | 3.77e-07 | 2 |
surface structure | 4.91e-07 | 99 |
integument | 6.78e-07 | 46 |
integumental system | 6.78e-07 | 46 |