FFCP PHASE1:Hg19::chr9:96698887..96698909,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C202 | |||
|description=CAGE_peak_at_chr9:96698887..96698909,+ | |||
|id=chr9:96698887..96698909,+ | |||
|ontology_enrichment_celltype=CL:0002322!2.05e-48!5;CL:0002623!1.65e-46!3;CL:0000622!3.04e-28!5;CL:0000154!1.15e-23!6;CL:0000946!1.65e-16!1;CL:0000786!1.65e-16!1;CL:0000980!1.65e-16!1;CL:0000150!5.16e-16!9;CL:0000148!2.23e-14!10;CL:0000541!2.23e-14!10;CL:0000147!1.90e-10!14;CL:0000785!6.42e-09!2;CL:0000955!6.42e-09!2;CL:0000818!6.42e-09!2;CL:0000954!6.42e-09!2;CL:0000816!6.42e-09!2;CL:0000082!6.94e-08!19;CL:0000710!1.77e-07!20;CL:0000151!2.67e-07!35;CL:0002251!3.42e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.93e-48;5!CL:0002623;1.78e-46;3!CL:0000622;3.19e-28;5!CL:0000154;1.20e-23;6!CL:0000946;1.65e-16;1!CL:0000786;1.65e-16;1!CL:0002321;1.85e-16;15!CL:0000150;5.29e-16;9!CL:0000148;2.13e-14;10!CL:0000147;1.84e-10;14!CL:0000082;7.03e-08;19!CL:0002251;1.60e-07;20!CL:0000710;1.73e-07;20!CL:0000151;3.80e-07;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.05e-48,5;CL:0002623,1.65e-46,3;CL:0000622,3.04e-28,5;CL:0000154,1.15e-23,6;CL:0000946,1.65e-16,1;CL:0000786,1.65e-16,1;CL:0000980,1.65e-16,1;CL:0000150,5.16e-16,9;CL:0000148,2.23e-14,10;CL:0000541,2.23e-14,10;CL:0000147,1.90e-10,14;CL:0000785,6.42e-09,2;CL:0000955,6.42e-09,2;CL:0000818,6.42e-09,2;CL:0000954,6.42e-09,2;CL:0000816,6.42e-09,2;CL:0000082,6.94e-08,19;CL:0002251,1.59e-07,20;CL:0000710,1.77e-07,20;CL:0000151,4.21e-07,36 | |||
|ontology_enrichment_development_v019=CL:0000954;6.42e-09;2 | |||
|ontology_enrichment_disease=DOID:5409!3.32e-16!4;DOID:3905!5.43e-16!9;DOID:1324!7.67e-10!15;DOID:1325!1.13e-09!7;DOID:3904!1.13e-09!7;DOID:0050615!2.91e-09!16 | |||
|ontology_enrichment_disease_v019=DOID:5409;3.45e-16;4!DOID:3905;5.57e-16;9!DOID:1324;7.79e-10;15!DOID:1325;1.16e-09;7!DOID:3904;1.16e-09;7!DOID:0050615;2.96e-09;16 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,3.32e-16,4;DOID:3905,5.43e-16,9;DOID:1324,7.67e-10,15;DOID:1325,1.13e-09,7;DOID:3904,1.13e-09,7;DOID:0050615,2.91e-09,16 | |||
|ontology_enrichment_uberon=UBERON:0001044!1.15e-23!6;UBERON:0003293!1.15e-23!6;UBERON:0003294!1.15e-23!6;UBERON:0010047!1.15e-23!6;UBERON:0000167!1.15e-23!6;UBERON:0003408!1.77e-14!10;UBERON:0000078!2.64e-08!18;UBERON:0004802!6.94e-08!19;UBERON:0000115!6.94e-08!19;UBERON:0001004!1.90e-07!72;UBERON:0000166!3.42e-07!21;UBERON:0002048!7.03e-07!22;UBERON:0000117!7.03e-07!22;UBERON:0000171!7.03e-07!22;UBERON:0000170!7.03e-07!22;UBERON:0005597!7.03e-07!22;UBERON:0000118!7.03e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0001044;1.20e-23;6!UBERON:0003293;1.20e-23;6!UBERON:0003294;1.20e-23;6!UBERON:0010047;1.20e-23;6!UBERON:0003408;1.20e-23;6!UBERON:0000167;1.20e-23;6!UBERON:0001041;1.64e-10;14!UBERON:0000161;6.86e-08;19!UBERON:0000166;6.86e-08;19!UBERON:0004802;7.03e-08;19!UBERON:0000115;7.03e-08;19!UBERON:0002048;7.10e-07;22!UBERON:0004807;7.10e-07;22!UBERON:0000117;7.10e-07;22!UBERON:0000171;7.10e-07;22!UBERON:0000170;7.10e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001044,1.15e-23,6;UBERON:0003293,1.15e-23,6;UBERON:0003294,1.15e-23,6;UBERON:0010047,1.15e-23,6;UBERON:0000167,1.15e-23,6;UBERON:0003408,1.77e-14,10;UBERON:0004802,6.94e-08,19;UBERON:0000115,6.94e-08,19;UBERON:0001004,3.08e-07,74;UBERON:0000166,6.89e-07,22;UBERON:0002048,7.03e-07,22;UBERON:0000117,7.03e-07,22;UBERON:0000171,7.03e-07,22;UBERON:0000170,7.03e-07,22;UBERON:0005597,7.03e-07,22;UBERON:0000118,7.03e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.7830287926443,3.5783037446801,5.22872742912833,15.5491582523056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.4163934093245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.9688249359238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.0605520657535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.91012292979702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,22.7937780579341,2.7314956335032,101.615170286671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.3839747967437,0,5.38708532052603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr9:96698887..96698909,+ | |||
}} |
Revision as of 02:15, 23 January 2014
Short description: | p@chr9:96698887..96698909, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:96698887..96698909, + |
Coexpression cluster: | C202_salivary_skin_penis_tongue_uterus_cervical_immature |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.05e-48 | 5 |
acinar cell of salivary gland | 1.65e-46 | 3 |
acinar cell | 3.04e-28 | 5 |
protein secreting cell | 1.15e-23 | 6 |
antibody secreting cell | 1.65e-16 | 1 |
plasma cell | 1.65e-16 | 1 |
plasmablast | 1.65e-16 | 1 |
glandular epithelial cell | 5.16e-16 | 9 |
melanocyte | 2.23e-14 | 10 |
melanoblast | 2.23e-14 | 10 |
pigment cell | 1.90e-10 | 14 |
mature B cell | 6.42e-09 | 2 |
pre-B-II cell | 6.42e-09 | 2 |
transitional stage B cell | 6.42e-09 | 2 |
small pre-B-II cell | 6.42e-09 | 2 |
immature B cell | 6.42e-09 | 2 |
epithelial cell of lung | 6.94e-08 | 19 |
epithelial cell of alimentary canal | 1.59e-07 | 20 |
neurecto-epithelial cell | 1.77e-07 | 20 |
secretory cell | 4.21e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
saliva-secreting gland | 1.15e-23 | 6 |
gland of oral region | 1.15e-23 | 6 |
gland of foregut | 1.15e-23 | 6 |
oral gland | 1.15e-23 | 6 |
oral cavity | 1.15e-23 | 6 |
gland of gut | 1.77e-14 | 10 |
respiratory tract epithelium | 6.94e-08 | 19 |
lung epithelium | 6.94e-08 | 19 |
respiratory system | 3.08e-07 | 74 |
oral opening | 6.89e-07 | 22 |
lung | 7.03e-07 | 22 |
respiratory tube | 7.03e-07 | 22 |
respiration organ | 7.03e-07 | 22 |
pair of lungs | 7.03e-07 | 22 |
lung primordium | 7.03e-07 | 22 |
lung bud | 7.03e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 3.32e-16 | 4 |
lung carcinoma | 5.43e-16 | 9 |
lung cancer | 7.67e-10 | 15 |
bronchus cancer | 1.13e-09 | 7 |
bronchogenic carcinoma | 1.13e-09 | 7 |
respiratory system cancer | 2.91e-09 | 16 |