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{{CL
{{CL
|id=CL:0000594
|alt_id=
|name=skeletal muscle satellite cell
|namespace=cell
|def="An elongated, spindle-shaped, quiescent myoblast that are located between the basal lamina and the plasmalemma of the muscle fibres. They are thought to play a role in muscle repair and regeneration." [GOC:tfm, MESH:A.11.635.500.700]
|xref=
|is_a=CL:0000035;;CL:0000188;;CL:0000680
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An elongated, spindle-shaped, quiescent myoblast that are located between the basal lamina and the plasmalemma of the muscle fibres. They are thought to play a role in muscle repair and regeneration." [GOC:tfm, MESH:A.11.635.500.700]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000594
|is_a=CL:0000188 ;;CL:0000680
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=skeletal muscle satellite cell
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001134
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:35, 12 September 2014

Name:skeletal muscle satellite cell
Namespace:FANTOM
Definition:"An elongated, spindle-shaped, quiescent myoblast that are located between the basal lamina and the plasmalemma of the muscle fibres. They are thought to play a role in muscle repair and regeneration." [GOC:tfm, MESH:A.11.635.500.700]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000188(cell of skeletal muscle),CL:0000680(muscle precursor cell)
part_of:UBERON:0001134(skeletal muscle tissue)



Children


derives from:FF:0000165 (human skeletal muscle satellite cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000594 (skeletal muscle satellite cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.35e-66FFCP PHASE1:Hg19::chr4:100126754..100126770,+#_17508f51b4b54bbddb82fdfd7b64646ap@chr4:100126754..100126770, +
3.35e-66FFCP PHASE2:Hg19::chr4:100126754..100126770,+#_17508f51b4b54bbddb82fdfd7b64646ap@chr4:100126754..100126770, +
9.99e-60FFCP PHASE1:Hg19::chr7:81337867..81337871,+#_01f9aa278954b7309d1cb3c68199f737p@chr7:81337867..81337871, +
9.99e-60FFCP PHASE2:Hg19::chr7:81337867..81337871,+#_01f9aa278954b7309d1cb3c68199f737p@chr7:81337867..81337871, +
7.24e-55FFCP PHASE2:Hg19::chr2:208104461..208104478,+#_68b9abfc07bb4bd9af906ba253cb3a37p3@ENST00000430494
7.24e-55FFCP PHASE1:Hg19::chr2:208104461..208104478,+#_68b9abfc07bb4bd9af906ba253cb3a37p3@ENST00000430494
1.51e-54FFCP PHASE1:Hg19::chr13:94958055..94958072,+#_5b747d63915ea14c362a1f6db9ed5a26p@chr13:94958055..94958072, +
1.51e-54FFCP PHASE2:Hg19::chr13:94958055..94958072,+#_5b747d63915ea14c362a1f6db9ed5a26p@chr13:94958055..94958072, +
2.17e-54FFCP PHASE2:Hg19::chr13:94958004..94958025,+#_ee18511c5f58c90eb1b5ca893f4febbbp@chr13:94958004..94958025, +
2.17e-54FFCP PHASE1:Hg19::chr13:94958004..94958025,+#_ee18511c5f58c90eb1b5ca893f4febbbp@chr13:94958004..94958025, +
2.23e-50FFCP PHASE2:Hg19::chr2:208104497..208104512,+#_3592541d8ee4c7787eed53200a045ed3p2@ENST00000430494
2.23e-50FFCP PHASE1:Hg19::chr2:208104497..208104512,+#_3592541d8ee4c7787eed53200a045ed3p2@ENST00000430494
1.65e-46FFCP PHASE1:Hg19::chr2:208175027..208175053,-#_86891087f8b16ccfc6b2b2504e5eddf9p@chr2:208175027..208175053, -
1.65e-46FFCP PHASE2:Hg19::chr2:208175027..208175053,-#_86891087f8b16ccfc6b2b2504e5eddf9p@chr2:208175027..208175053, -
3.19e-38FFCP PHASE1:Hg19::chr11:85090268..85090294,-#_2cbc7604ecccae9456cc7eab406a677ap@chr11:85090268..85090294, -
3.19e-38FFCP PHASE2:Hg19::chr11:85090268..85090294,-#_2cbc7604ecccae9456cc7eab406a677ap@chr11:85090268..85090294, -
4.27e-34FFCP PHASE2:Hg19::chr13:43382596..43382621,-#_0c274a0b07c2a2fcbaca7cc1a5dfc7d2p@chr13:43382596..43382621, -
4.27e-34FFCP PHASE2:Hg19::chr8:87774996..87775001,+#_0c274a0b07c2a2fcbaca7cc1a5dfc7d2p@chr8:87774996..87775001, +
4.27e-34FFCP PHASE1:Hg19::chr13:43382596..43382621,-#_0c274a0b07c2a2fcbaca7cc1a5dfc7d2p@chr13:43382596..43382621, -
4.27e-34FFCP PHASE1:Hg19::chr8:87774996..87775001,+#_0c274a0b07c2a2fcbaca7cc1a5dfc7d2p@chr8:87774996..87775001, +
5.31e-27FFCP PHASE2:Hg19::chr1:14219676..14219688,+#_084c3d78d003cc6b51902ab7e3378a0dp@chr1:14219676..14219688, +
5.31e-27FFCP PHASE1:Hg19::chr1:14219676..14219688,+#_084c3d78d003cc6b51902ab7e3378a0dp@chr1:14219676..14219688, +
1.34e-25FFCP PHASE2:Hg19::chr8:25902668..25902680,-#_726e64c5c7ca444d693d3f7ad5e0d9fep3@EBF2
1.34e-25FFCP PHASE1:Hg19::chr8:25902668..25902680,-#_726e64c5c7ca444d693d3f7ad5e0d9fep3@EBF2
6.54e-25FFCP PHASE2:Hg19::chr1:78401534..78401545,+#_6c9fa0dc65f305648e65488f9ad7a8edp@chr1:78401534..78401545, +
6.54e-25FFCP PHASE1:Hg19::chr1:78401534..78401545,+#_6c9fa0dc65f305648e65488f9ad7a8edp@chr1:78401534..78401545, +
2.35e-23FFCP PHASE2:Hg19::chr1:78695343..78695353,+#_361163e32201c1088d0506cc6e0aa43dp2@ENST00000413519
2.35e-23FFCP PHASE1:Hg19::chr1:78695343..78695353,+#_361163e32201c1088d0506cc6e0aa43dp2@ENST00000413519
3.27e-23FFCP PHASE2:Hg19::chr9:98577619..98577666,+#_8c4216a57585989f6fc873abf38c2c96p@chr9:98577619..98577666, +
3.27e-23FFCP PHASE1:Hg19::chr9:98577619..98577666,+#_8c4216a57585989f6fc873abf38c2c96p@chr9:98577619..98577666, +
5.15e-23FFCP PHASE1:Hg19::chr2:189387474..189387512,+#_92dbb479088debe5a8d9c89d00455bd8p11@GULP1
5.15e-23FFCP PHASE2:Hg19::chr2:189387474..189387512,+#_92dbb479088debe5a8d9c89d00455bd8p11@GULP1
7.42e-22FFCP PHASE2:Hg19::chr7:81400148..81400151,+#_bcf4940bfb921d8c24c2e5cedbef9e41p@chr7:81400148..81400151, +
7.42e-22FFCP PHASE1:Hg19::chr7:81400148..81400151,+#_bcf4940bfb921d8c24c2e5cedbef9e41p@chr7:81400148..81400151, +
1.96e-21FFCP PHASE2:Hg19::chr7:81319697..81319713,+#_3b7d1a0a2bbcf0992e000a39f5c7bfbep@chr7:81319697..81319713, +
1.96e-21FFCP PHASE1:Hg19::chr7:81319697..81319713,+#_3b7d1a0a2bbcf0992e000a39f5c7bfbep@chr7:81319697..81319713, +
2.17e-21FFCP PHASE1:Hg19::chr13:94958134..94958164,+#_888111c315f96ceffae8ca7e5053496dp@chr13:94958134..94958164, +
2.17e-21FFCP PHASE2:Hg19::chr13:94958134..94958164,+#_888111c315f96ceffae8ca7e5053496dp@chr13:94958134..94958164, +
2.4e-21FFCP PHASE2:Hg19::chr7:81319656..81319686,+#_87421108aa5b0a120cd9ad564e85a0d6p@chr7:81319656..81319686, +
2.4e-21FFCP PHASE1:Hg19::chr7:81319656..81319686,+#_87421108aa5b0a120cd9ad564e85a0d6p@chr7:81319656..81319686, +
4.94e-20FFCP PHASE2:Hg19::chr3:24547235..24547267,-#_28f58484f44a1e9ff343bdfc48a88f32p@chr3:24547235..24547267, -
4.94e-20FFCP PHASE1:Hg19::chr3:24547235..24547267,-#_28f58484f44a1e9ff343bdfc48a88f32p@chr3:24547235..24547267, -
2.27e-19FFCP PHASE2:Hg19::chr6:52001069..52001073,+#_f0c0b2697d096aa9b1f3b9d79bfe5161p@chr6:52001069..52001073, +
2.27e-19FFCP PHASE1:Hg19::chr6:52001069..52001073,+#_f0c0b2697d096aa9b1f3b9d79bfe5161p@chr6:52001069..52001073, +
2.76e-18FFCP PHASE2:Hg19::chr7:15713220..15713223,-#_a917f2ed68233f411714a93800fc82eap@chr7:15713220..15713223, -
2.76e-18FFCP PHASE1:Hg19::chr7:15713220..15713223,-#_a917f2ed68233f411714a93800fc82eap@chr7:15713220..15713223, -
8.4e-18FFCP PHASE2:Hg19::chr2:145161707..145161728,-#_20030551f2aec37333b179c52d58ccfep@chr2:145161707..145161728, -
8.4e-18FFCP PHASE1:Hg19::chr2:145161707..145161728,-#_20030551f2aec37333b179c52d58ccfep@chr2:145161707..145161728, -
1.12e-17FFCP PHASE1:Hg19::chr1:65366744..65366755,-#_552290f25e9583ce3ea1010015bf1b34p@chr1:65366744..65366755, -
1.12e-17FFCP PHASE2:Hg19::chr1:65366744..65366755,-#_552290f25e9583ce3ea1010015bf1b34p@chr1:65366744..65366755, -
1.28e-17FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_4b7c62964ccf1c1fce4ad2142b0af084p@chr2:241897363..241897398, +
1.28e-17FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_4b7c62964ccf1c1fce4ad2142b0af084p@chr2:241897363..241897398, +
1.39e-17FFCP PHASE2:Hg19::chr2:233404395..233404408,+#_80586c9b6b2e81e1466c86dd1fc6df1cp2@CHRNG
1.39e-17FFCP PHASE1:Hg19::chr2:233404395..233404408,+#_80586c9b6b2e81e1466c86dd1fc6df1cp2@CHRNG
1.05e-16FFCP PHASE1:Hg19::chr1:183247759..183247772,-#_f164040e256024d1d756b24544484fa0p4@NMNAT2
1.05e-16FFCP PHASE2:Hg19::chr1:183247759..183247772,-#_f164040e256024d1d756b24544484fa0p4@NMNAT2
1.53e-16FFCP PHASE2:Hg19::chr2:208104573..208104589,+#_a018782ab157523957f9e74e37d6fcabp1@ENST00000430494
1.53e-16FFCP PHASE1:Hg19::chr2:208104573..208104589,+#_a018782ab157523957f9e74e37d6fcabp1@ENST00000430494
1.74e-16FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_a0416ce09d9f88dc336c6fc474d64ac9p@chr9:16138889..16138902, -
1.74e-16FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_a0416ce09d9f88dc336c6fc474d64ac9p@chr9:16138889..16138902, -
4.3e-16FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_757b91fa4af03ac05b4de8f358c90d6bp1@ENST00000413519
4.3e-16FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_757b91fa4af03ac05b4de8f358c90d6bp1@ENST00000413519
6.26e-16FFCP PHASE2:Hg19::chr5:53776469..53776484,+#_8f4a3d1aedfb62e623cfe89c09c7fd76p@chr5:53776469..53776484, +
6.26e-16FFCP PHASE1:Hg19::chr5:53776469..53776484,+#_8f4a3d1aedfb62e623cfe89c09c7fd76p@chr5:53776469..53776484, +
1.01e-15FFCP PHASE1:Hg19::chr12:88813132..88813143,-#_9e744602328de66f6983f581534c6a54p@chr12:88813132..88813143, -
1.01e-15FFCP PHASE2:Hg19::chr12:88813132..88813143,-#_9e744602328de66f6983f581534c6a54p@chr12:88813132..88813143, -
2.55e-15FFCP PHASE1:Hg19::chr9:16871214..16871260,-#_a43e1e586093599be701665f7ca0d7cep11@BNC2
2.55e-15FFCP PHASE2:Hg19::chr9:16871214..16871260,-#_a43e1e586093599be701665f7ca0d7cep11@BNC2
3.22e-15FFCP PHASE1:Hg19::chr12:54359771..54359813,+#_2102dd065701d94df2dd46c6171309e6p@chr12:54359771..54359813, +
3.22e-15FFCP PHASE2:Hg19::chr12:54359771..54359813,+#_2102dd065701d94df2dd46c6171309e6p@chr12:54359771..54359813, +
3.69e-15FFCP PHASE2:Hg19::chr17:10560619..10560631,-#_729db635c74d1da8aeb9b3243f66bd62p1@MYH3
3.69e-15FFCP PHASE1:Hg19::chr17:10560619..10560631,-#_729db635c74d1da8aeb9b3243f66bd62p1@MYH3
1.22e-14FFCP PHASE2:Hg19::chr2:102635753..102635766,+#_bdb4f8d488f24dadabf7dff041288267p@chr2:102635753..102635766, +
1.22e-14FFCP PHASE1:Hg19::chr2:102635753..102635766,+#_bdb4f8d488f24dadabf7dff041288267p@chr2:102635753..102635766, +
1.4e-14FFCP PHASE2:Hg19::chr9:16614953..16614957,-#_dabc18fa4e8a85ad572368d0a2ee5b87p@chr9:16614953..16614957, -
1.4e-14FFCP PHASE2:Hg19::chr13:36766022..36766034,-#_dabc18fa4e8a85ad572368d0a2ee5b87p@chr13:36766022..36766034, -
1.4e-14FFCP PHASE1:Hg19::chr9:16614953..16614957,-#_dabc18fa4e8a85ad572368d0a2ee5b87p@chr9:16614953..16614957, -
1.4e-14FFCP PHASE1:Hg19::chr13:36766022..36766034,-#_dabc18fa4e8a85ad572368d0a2ee5b87p@chr13:36766022..36766034, -
3.17e-14FFCP PHASE2:Hg19::chr3:154797315..154797322,+#_10925274be209ad4329d9d4e82b0c691p24@MME
3.17e-14FFCP PHASE1:Hg19::chr3:154797315..154797322,+#_10925274be209ad4329d9d4e82b0c691p24@MME
3.87e-14FFCP PHASE2:Hg19::chr21:30503294..30503312,+#_474bc0e2b630652cb86e77fcb376e329p10@C21orf7
3.87e-14FFCP PHASE1:Hg19::chr21:30503294..30503312,+#_474bc0e2b630652cb86e77fcb376e329p10@C21orf7
6.96e-14FFCP PHASE2:Hg19::chr9:136390071..136390087,-#_e22859e510fe4c9f839172bd6ae8f9b6p1@TMEM8C
6.96e-14FFCP PHASE1:Hg19::chr9:136390071..136390087,-#_e22859e510fe4c9f839172bd6ae8f9b6p1@TMEM8C
3.16e-13FFCP PHASE1:Hg19::chr13:25591521..25591529,+#_acbc6d4ca000a7928db57648f20deab9p@chr13:25591521..25591529, +
3.16e-13FFCP PHASE2:Hg19::chr13:25591521..25591529,+#_acbc6d4ca000a7928db57648f20deab9p@chr13:25591521..25591529, +
4.61e-13FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_ce97986d92b33dfe648a90c7d200b112p1@MGC27382
4.61e-13FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_ce97986d92b33dfe648a90c7d200b112p1@MGC27382
5.81e-13FFCP PHASE2:Hg19::chr1:201398985..201399000,-#_4640b0608d78c59b2bfa1a55a8062b30p2@TNNI1
5.81e-13FFCP PHASE1:Hg19::chr1:201398985..201399000,-#_4640b0608d78c59b2bfa1a55a8062b30p2@TNNI1
6.81e-13FFCP PHASE2:Hg19::chr9:16689157..16689162,-#_b981d7df2713ff58420da4dc0fa7b6dap@chr9:16689157..16689162, -
6.81e-13FFCP PHASE1:Hg19::chr9:16689157..16689162,-#_b981d7df2713ff58420da4dc0fa7b6dap@chr9:16689157..16689162, -
1.69e-12FFCP PHASE2:Hg19::chr2:216235008..216235020,-#_bfde5574b4aa2f63987e4186a8b2f197p70@FN1
1.69e-12FFCP PHASE1:Hg19::chr2:216235008..216235020,-#_bfde5574b4aa2f63987e4186a8b2f197p70@FN1
2.07e-12FFCP PHASE2:Hg19::chr9:23769271..23769295,-#_1f86c97312a4e4e2fde6db31eb5b9b3fp@chr9:23769271..23769295, -
2.07e-12FFCP PHASE1:Hg19::chr9:23769271..23769295,-#_1f86c97312a4e4e2fde6db31eb5b9b3fp@chr9:23769271..23769295, -
2.31e-12FFCP PHASE2:Hg19::chr7:107720432..107720443,+#_acabff2aac97de34f063033df5bd6d59p@chr7:107720432..107720443, +
2.31e-12FFCP PHASE1:Hg19::chr7:107720432..107720443,+#_acabff2aac97de34f063033df5bd6d59p@chr7:107720432..107720443, +
2.59e-12FFCP PHASE2:Hg19::chr16:70732811..70732824,-#_943899716a2db9cbf468775f299e17f7p@chr16:70732811..70732824, -
2.59e-12FFCP PHASE1:Hg19::chr16:70732811..70732824,-#_943899716a2db9cbf468775f299e17f7p@chr16:70732811..70732824, -

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