DOID:3119: Difference between revisions
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{{DOID | {{DOID | ||
| | |alt_id=DOID:4945;;DOID:8377 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="An organ system cancer located_in gastrointestinal tract that is manifested in organs of the gastrointestinal system." [url:http://en.wikipedia.org/wiki/Human_gastrointestinal_tract] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=DOID:3119 | |||
|is_a=DOID:0050686 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=gastrointestinal system cancer | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | |property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | ||
| | |subset= | ||
| | |synonym="digestive system cancer" EXACT [];;"gastrointestinal tract cancer" EXACT [NCI2004_11_17:C4890];;"GI tumor" EXACT [NCI2004_11_17:C3052] | ||
|union_of= | |||
|xref=ICD9CM:239.0;;MSH:D004067;;SNOMEDCT_2010_1_31:126768004;;SNOMEDCT_2010_1_31:128348002;;SNOMEDCT_2010_1_31:128415001;;SNOMEDCT_2010_1_31:189527000;;SNOMEDCT_2010_1_31:276806006;;SNOMEDCT_2010_1_31:367543008;;SNOMEDCT_2010_1_31:428905002;;SNOMEDCT_2010_1_31:93811007;;UMLS_CUI:C0012243;;UMLS_CUI:C0017185;;UMLS_CUI:C0685938 | |||
}} | }} |
Latest revision as of 16:50, 12 September 2014
Name: | gastrointestinal system cancer | |
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Namespace: | FANTOM | |
Definition: | "An organ system cancer located_in gastrointestinal tract that is manifested in organs of the gastrointestinal system." [url:http://en.wikipedia.org/wiki/Human_gastrointestinal_tract] | |
Xrefs: |
| |
Synonyms: |
"digestive system cancer" EXACT [] "gastrointestinal tract cancer" EXACT [NCI2004_11_17:C4890] "GI tumor" EXACT [NCI2004_11_17:C3052] | |
Alt_id: |
DOID:4945 DOID:8377 |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | DOID:0050686(organ system cancer) |
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Children
is a: | DOID:0060119 (pharynx cancer),FF:0100797 (colonic cancer cell line),DOID:10155 (intestinal cancer),FF:10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB),DOID:10534 (stomach cancer),FF:10628-108H7 (),DOID:3571 (liver cancer),DOID:8618 (oral cavity cancer) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10436-106E4 (signet ring carcinoma cell line:Kato III)
- 10459-106G9
- 10469-106I1 (rectal cancer cell line:TT1TKB)
- 10473-106I5
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10516-107E3
- 10520-107E7
... further results Mouse (Mus musculus)
- 10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10436-106E4 (signet ring carcinoma cell line:Kato III)
- 10459-106G9
- 10469-106I1 (rectal cancer cell line:TT1TKB)
- 10473-106I5
- 10511-107D7
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10516-107E3
- 10520-107E7
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3119 (gastrointestinal system cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data