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{{DOID
{{DOID
|id=DOID:3119
|alt_id=DOID:4945;;DOID:8377
|name=gastrointestinal system cancer
|namespace=
|def="An organ system cancer located_in gastrointestinal tract that is manifested in organs of the gastrointestinal system." [url:http\://en.wikipedia.org/wiki/Human_gastrointestinal_tract]
|xref=
|is_a=DOID:0050686
|synonym="digestive system cancer" EXACT [];;"gastrointestinal tract cancer" EXACT [NCI2004_11_17:C4890];;"GI tumor" EXACT [NCI2004_11_17:C3052]
|comment=
|comment=
|alt_id=DOID:8377
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An organ system cancer located_in gastrointestinal tract that is manifested in organs of the gastrointestinal system." [url:http://en.wikipedia.org/wiki/Human_gastrointestinal_tract]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
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|has_quality=
|id=DOID:3119
|is_a=DOID:0050686
|is_obsolete=
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|located_in=
|name=gastrointestinal system cancer
|namespace=FANTOM
|obo_creation_date=
|part_of=
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|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|subset=
|synonym="digestive system cancer" EXACT [];;"gastrointestinal tract cancer" EXACT [NCI2004_11_17:C4890];;"GI tumor" EXACT [NCI2004_11_17:C3052]
|union_of=
|xref=ICD9CM:239.0;;MSH:D004067;;SNOMEDCT_2010_1_31:126768004;;SNOMEDCT_2010_1_31:128348002;;SNOMEDCT_2010_1_31:128415001;;SNOMEDCT_2010_1_31:189527000;;SNOMEDCT_2010_1_31:276806006;;SNOMEDCT_2010_1_31:367543008;;SNOMEDCT_2010_1_31:428905002;;SNOMEDCT_2010_1_31:93811007;;UMLS_CUI:C0012243;;UMLS_CUI:C0017185;;UMLS_CUI:C0685938
}}
}}

Latest revision as of 16:50, 12 September 2014

Name:gastrointestinal system cancer
Namespace:FANTOM
Definition:"An organ system cancer located_in gastrointestinal tract that is manifested in organs of the gastrointestinal system." [url:http://en.wikipedia.org/wiki/Human_gastrointestinal_tract]
Xrefs:
links:

ICD9CM:239.0
MSH:D004067
SNOMEDCT_2010_1_31:126768004
SNOMEDCT_2010_1_31:128348002
SNOMEDCT_2010_1_31:128415001
SNOMEDCT_2010_1_31:189527000
SNOMEDCT_2010_1_31:276806006
SNOMEDCT_2010_1_31:367543008
SNOMEDCT_2010_1_31:428905002
SNOMEDCT_2010_1_31:93811007
UMLS_CUI:C0012243
UMLS_CUI:C0017185

UMLS_CUI:C0685938
Synonyms: "digestive system cancer" EXACT []
"gastrointestinal tract cancer" EXACT [NCI2004_11_17:C4890]
"GI tumor" EXACT [NCI2004_11_17:C3052]
Alt_id: DOID:4945
DOID:8377

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:DOID:0050686(organ system cancer)



Children


is a:DOID:0060119 (pharynx cancer),FF:0100797 (colonic cancer cell line),DOID:10155 (intestinal cancer),FF:10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB),DOID:10534 (stomach cancer),FF:10628-108H7 (),DOID:3571 (liver cancer),DOID:8618 (oral cavity cancer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3119 (gastrointestinal system cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data