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{{UBERON
{{UBERON
|id=UBERON:0000349
|alt_id=UBERON:BTO_0000928-FMA_242000
|name=limbic system
|namespace=
|def="A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. [BirnLex]. including the hippocampus, amygdala, anterior thalamic nuclei, and limbic cortex, which support a variety of functions including emotion, behavior, long term memory, and olfaction [Wikipedia]." [BIRNLEX:Limbic_system, Wikipedia:Limbic_system]
|xref=BTO:0000928;;FMA:242000;;GAID:615;;http://upload.wikimedia.org/wikipedia/commons/5/5c/Brain_limbicsystem.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Brain_limbicsystem.jpg/200px-Brain_limbicsystem.jpg;;MESH:A.08.186.211.577;;ncithesaurus:Limbic_System;;OpenCyc:Mx4rwAeba5wpEbGdrcN5Y29ycA;;SCTID:361342009
|is_a=UBERON:0000467;;UBERON:0004121
|synonym=
|comment=obsoletion recommended. The current part_of children were chosen as the intersection of what is stated in wikipedia and in the FMA. NIF: We are including Limbic System because it is still used by neuroscientists and others, but as a data annotation term, it is very poor because it is not a clearly defined entity.
|comment=obsoletion recommended. The current part_of children were chosen as the intersection of what is stated in wikipedia and in the FMA. NIF: We are including Limbic System because it is still used by neuroscientists and others, but as a data annotation term, it is very poor because it is not a clearly defined entity.
|alt_id=UBERON:BTO_0000928-FMA_242000
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. [BirnLex]. including the hippocampus, amygdala, anterior thalamic nuclei, and limbic cortex, which support a variety of functions including emotion, behavior, long term memory, and olfaction [Wikipedia]." [BIRNLEX:Limbic_system, Wikipedia:Limbic_system]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000349
|is_a=UBERON:0000477 ;;UBERON:0004121
|is_obsolete=
|located_in=
|located_in=
|name=limbic system
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001890
|part_of=UBERON:0001890
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0000928;;FMA:242000;;GAID:615;;http://upload.wikimedia.org/wikipedia/commons/5/5c/Brain_limbicsystem.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Brain_limbicsystem.jpg/200px-Brain_limbicsystem.jpg;;MESH:A.08.186.211.577;;ncithesaurus:Limbic_System;;OpenCyc:Mx4rwAeba5wpEbGdrcN5Y29ycA;;SCTID:361342009
}}
}}

Latest revision as of 17:08, 12 September 2014

Name:limbic system
Namespace:FANTOM
Definition:"A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. [BirnLex]. including the hippocampus, amygdala, anterior thalamic nuclei, and limbic cortex, which support a variety of functions including emotion, behavior, long term memory, and olfaction [Wikipedia]." [BIRNLEX:Limbic_system, Wikipedia:Limbic_system]
Xrefs:
links:

BTO:0000928
FMA:242000
GAID:615
[1]
[2]
MESH:A.08.186.211.577
ncithesaurus:Limbic_System
OpenCyc:Mx4rwAeba5wpEbGdrcN5Y29ycA

SCTID:361342009
Comments:obsoletion recommended. The current part_of children were chosen as the intersection of what is stated in wikipedia and in the FMA. NIF: We are including Limbic System because it is still used by neuroscientists and others, but as a data annotation term, it is very poor because it is not a clearly defined entity.
Alt_id: UBERON:BTO_0000928-FMA_242000

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0001890(forebrain)



Children

part of:UBERON:0001876 (amygdala),UBERON:0001882 (nucleus accumbens),UBERON:0001954 (Ammon's horn)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000349 (limbic system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data