UBERON:0001231: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0001231
|name=nephron tubule
|namespace=
|def="An epithelial tube that is part of the nephron, the functional part of the kidney." [GO:0072078, Wikiped...") |
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:0004210;;UBERON:FMA_15627-ZFA_0001287 | ||
|comment=note that in ISBN10:0073040584 "Vertebrates, Kardong", the uriniferous tubule contains the nephron, so we have a separate class, rather than using a synonym, as in MA | |comment=note that in ISBN10:0073040584 "Vertebrates, Kardong", the uriniferous tubule contains the nephron, so we have a separate class, rather than using a synonym, as in MA | ||
|created_by= | |created_by= | ||
| | |def="An epithelial tube that is part of the nephron, the functional part of the kidney." [GO:0072078, Wikipedia:Renal_tubule] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0003918 | |develops_from=UBERON:0003918 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001231 | |||
|is_a=UBERON:0004211 ;;UBERON:0009773 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=nephron tubule | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001285 | |part_of=UBERON:0001285 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |||
|subset=uberon_slim;;vertebrate_core | |||
|synonym="kidney tubule" EXACT [GAID:433];;"renal tubule" BROAD [];;"tubulus renalis" EXACT [];;"uriniferous tubule" RELATED [MA:0000377] | |||
|union_of= | |||
|xref=BTO:0000343;;EFO:0003666;;EMAPA:27782;;EV:0100387;;FMA:15627;;GAID:433;;MA:0000377;;MESH:A.05.810.453.736.560;;ncithesaurus:Renal_Tubule;;SCTID:361332007;;TAO:0001287;;ZFA:0001287 | |||
}} | }} | ||
Latest revision as of 17:16, 12 September 2014
| Name: | nephron tubule | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "An epithelial tube that is part of the nephron, the functional part of the kidney." [GO:0072078, Wikipedia:Renal_tubule] | |
| Xrefs: |
| |
| Synonyms: |
"kidney tubule" EXACT [GAID:433] "renal tubule" BROAD [] "tubulus renalis" EXACT [] "uriniferous tubule" RELATED [MA:0000377] | |
| Comments: | note that in ISBN10:0073040584 "Vertebrates, Kardong", the uriniferous tubule contains the nephron, so we have a separate class, rather than using a synonym, as in MA | |
| Alt_id: |
UBERON:0004210 UBERON:FMA_15627-ZFA_0001287 | |
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004211(nephron epithelium),UBERON:0009773(renal tubule) |
|---|---|
| develops_from: | UBERON:0003918(kidney mesenchyme) |
| part_of: | UBERON:0001285(nephron) |
Children
| is a: | UBERON:0004198 (comma-shaped body),UBERON:0007685 (region of nephron tubule) |
|---|---|
| part of: | UBERON:0004134 (proximal tubule),UBERON:0004810 (nephron tubule epithelium),UBERON:0007685 (region of nephron tubule),CL:1000494 (nephron tubule epithelial cell),CL:1000507 (kidney tubule cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11517-119H5 (Renal Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11596-120H3 (Renal Cortical Epithelial Cells, donor2)
- 11597-120H4 (Renal Epithelial Cells, donor2)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
- 11677-122H3
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001231 (nephron tubule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
