Personal tools

UBERON:0001690: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0001690
|alt_id=UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
|name=ear
|anatomical_img_id=FMA:52780
|namespace=
|def="Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
|xref=AAO:0011014;;BTO:0000368;;EFO:0000826;;EHDAA2:0000423;;EHDAA:502;;EMAPA:16193;;EV:0100353;;FMA:52780;;GAID:62;;galen:Ear;;http://upload.wikimedia.org/wikipedia/commons/b/b8/Ear.jpg;;MA:0000236;;MAT:0000138;;MESH:A.01.456.313;;MIAA:0000138;;ncithesaurus:Ear;;NIF_GrossAnatomy:birnlex_1062;;OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA;;OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA;;SCTID:1910005;;VHOG:0000330;;XAO:0000189
|is_a=UBERON:0000020;;UBERON:0010314
|synonym="auditory apparatus" RELATED [];;"auris" RELATED [BTO:0000368]
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
|subset=organ_slim;;uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001690
|is_a=UBERON:0000020 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=ear
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000033;;UBERON:0002105
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=organ_slim;;uberon_slim
|preceded_by=
|synonym="auditory apparatus" RELATED [];;"auris" RELATED [BTO:0000368]
|union_of=
|xref=AAO:0011014;;BTO:0000368;;EFO:0000826;;EHDAA2:0000423;;EHDAA:502;;EMAPA:16193;;EV:0100353;;FMA:52780;;GAID:62;;galen:Ear;;http://upload.wikimedia.org/wikipedia/commons/b/b8/Ear.jpg;;MA:0000236;;MAT:0000138;;MESH:A.01.456.313;;MIAA:0000138;;ncithesaurus:Ear;;NIF_GrossAnatomy:birnlex_1062;;OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA;;OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA;;SCTID:1910005;;VHOG:0000330;;XAO:0000189
}}
}}

Latest revision as of 17:19, 12 September 2014

Name:ear
Namespace:FANTOM
Definition:"Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
Xrefs:
links:

AAO:0011014
BTO:0000368
EFO:0000826
EHDAA2:0000423
EHDAA:502
EMAPA:16193
EV:0100353
FMA:52780
GAID:62
galen:Ear
[1]
MA:0000236
MAT:0000138
MESH:A.01.456.313
MIAA:0000138
ncithesaurus:Ear
NIF_GrossAnatomy:birnlex_1062
OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA
OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA
SCTID:1910005
VHOG:0000330

XAO:0000189
Synonyms: "auditory apparatus" RELATED []
"auris" RELATED [BTO:0000368]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0000033(head),UBERON:0002105(vestibulo-auditory system)



Children

part of:UBERON:0001846 (internal ear),UBERON:0003069 (otic placode),UBERON:0015807 (ear epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001690 (ear), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_1d13cb136fd2abf98a4e0d45469142ffp2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_1d13cb136fd2abf98a4e0d45469142ffp5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_1d13cb136fd2abf98a4e0d45469142ffp4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_1d13cb136fd2abf98a4e0d45469142ffp18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_1d13cb136fd2abf98a4e0d45469142ffp13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_1d13cb136fd2abf98a4e0d45469142ffp9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_1d13cb136fd2abf98a4e0d45469142ffp12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_1d13cb136fd2abf98a4e0d45469142ffp6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_1d13cb136fd2abf98a4e0d45469142ffp@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_1d13cb136fd2abf98a4e0d45469142ffp6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Strc
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_1d13cb136fd2abf98a4e0d45469142ffp2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:182528388..182528403, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641779..65641790,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:43699188..43699216, +
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_1d13cb136fd2abf98a4e0d45469142ffp9@Otof
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr10:108316802..108316807, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr4:130461150..130461185, +
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_1d13cb136fd2abf98a4e0d45469142ffp4@BC030867
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:65641779..65641790, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001690&oldid=3277264"