Personal tools

UBERON:0002370: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002370
|alt_id=UBERON:FMA_9607-MA_0000142-MIAA_0000080-XAO_0000163-ZFA_0001078
|name=thymus
|anatomical_img_id=FMA:9607
|namespace=
|def="Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [NLM:thymus, Wikipedia:Thymus]
|xref=AAO:0010548;;BTO:0001374;;EFO:0000860;;EHDAA2:0002017;;EHDAA:9119;;EMAPA:18768;;EV:0100138;;FMA:9607;;GAID:464;;http://upload.wikimedia.org/wikipedia/commons/c/cf/Illu_thymus.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Illu_thymus.jpg/200px-Illu_thymus.jpg;;MA:0000142;;MAT:0000080;;MESH:A.06.407.850;;MIAA:0000080;;ncithesaurus:Thymus_Gland;;OpenCyc:Mx4rvpIympwpEbGdrcN5Y29ycA;;SCTID:118507000;;TAO:0001078;;VHOG:0000253;;XAO:0000163;;ZFA:0001078
|is_a=UBERON:0000077;;UBERON:0002368;;UBERON:0004177;;UBERON:0005057;;UBERON:0005058
|synonym="thymus gland" EXACT []
|comment=check - a subtype of gland? not in GO. NCIT has thymus and thymus gland. EHDAA2 has ductless gland
|comment=check - a subtype of gland? not in GO. NCIT has thymus and thymus gland. EHDAA2 has ductless gland
|alt_id=UBERON:FMA_9607-MA_0000142-MIAA_0000080-XAO_0000163-ZFA_0001078
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [NLM:thymus, Wikipedia:Thymus]
|subset=major_organ;;organ_slim;;uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0005562
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002370
|is_a=UBERON:0000077 ;;UBERON:0002368 ;;UBERON:0004177 ;;UBERON:0005057 ;;UBERON:0005058
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=thymus
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000949;;UBERON:0002390;;UBERON:0002405;;UBERON:0009113
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure which originates as several paired thickenings on the dorsal side of the pharyngeal pouches and secretes thymosin.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure which originates as several paired thickenings on the dorsal side of the pharyngeal pouches and secretes thymosin.[AAO]" xsd:string
|is_obsolete=
|subset=major_organ;;organ_slim;;uberon_slim;;vertebrate_core
|preceded_by=
|synonym="thymus gland" EXACT []
|union_of=
|xref=AAO:0010548;;BTO:0001374;;EFO:0000860;;EHDAA2:0002017;;EHDAA:9119;;EMAPA:18768;;EV:0100138;;FMA:9607;;GAID:464;;http://upload.wikimedia.org/wikipedia/commons/c/cf/Illu_thymus.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Illu_thymus.jpg/200px-Illu_thymus.jpg;;MA:0000142;;MAT:0000080;;MESH:A.06.407.850;;MIAA:0000080;;ncithesaurus:Thymus_Gland;;OpenCyc:Mx4rvpIympwpEbGdrcN5Y29ycA;;SCTID:118507000;;TAO:0001078;;VHOG:0000253;;XAO:0000163;;ZFA:0001078
}}
}}

Latest revision as of 17:30, 12 September 2014

Name:thymus
Namespace:FANTOM
Definition:"Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [NLM:thymus, Wikipedia:Thymus]
Xrefs:
links:

AAO:0010548
BTO:0001374
EFO:0000860
EHDAA2:0002017
EHDAA:9119
EMAPA:18768
EV:0100138
FMA:9607
GAID:464
[1]
[2]
MA:0000142
MAT:0000080
MESH:A.06.407.850
MIAA:0000080
ncithesaurus:Thymus_Gland
OpenCyc:Mx4rvpIympwpEbGdrcN5Y29ycA
SCTID:118507000
TAO:0001078
VHOG:0000253
XAO:0000163

ZFA:0001078
Synonyms: "thymus gland" EXACT []
Comments:check - a subtype of gland? not in GO. NCIT has thymus and thymus gland. EHDAA2 has ductless gland
Alt_id: UBERON:FMA_9607-MA_0000142-MIAA_0000080-XAO_0000163-ZFA_0001078
Subset: major_organ
organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0002368(endocrine gland),UBERON:0004177(hemopoietic organ),UBERON:0005057(immune organ),UBERON:0005058(hemolymphoid system gland)
develops_from:UBERON:0005562(thymus primordium)
part_of:UBERON:0000949(endocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0009113(thymic region)



Children

derives from:FF:0010027 (thymus - adult human sample),FF:0010043 (human thymus - fetal sample),FF:0011280 (mouse thymus- neonate N02 sample),FF:0011304 (mouse thymus- neonate N03 sample),FF:0011329 (mouse thymus- adult sample),FF:0011336 (mouse thymus- embryo E14 sample),FF:0011346 (mouse thymus- embryo E15 sample),FF:0011355 (mouse thymus- embryo E16 sample),FF:0011366 (mouse thymus- embryo E17 sample),FF:0011401 (mouse thymus- neonate N06 sample),FF:0011407 (mouse thymus- neonate N07 sample),FF:0011413 (mouse thymus- neonate N10 sample),FF:0011426 (mouse thymus- neonate N20 sample),FF:0011496 (mouse thymus- neonate N25 sample),FF:0011497 (mouse thymus- neonate N30 sample),FF:0011516 (mouse thymus- embryo E18 sample),FF:0101455 (thymic carcinoma cell sample)
part of:CL:0000809 (double-positive, alpha-beta thymocyte),CL:0000810 (CD4-positive, alpha-beta thymocyte),CL:0000893 (thymocyte),CL:0000894 (DN1 thymic pro-T cell),CL:0002293 (epithelial cell of thymus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002370 (thymus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which originates as several paired thickenings on the dorsal side of the pharyngeal pouches and secretes thymosin.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.