Personal tools

UBERON:0005423: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=developing anatomical structure
|name=developing anatomical structure
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 17:53, 12 September 2014

Name:developing anatomical structure
Namespace:FANTOM
Xrefs:
links:

AEO:0000125
EHDAA2:0003125
FBbt:00007006

MIAA:0000019
Synonyms: "developing structure" RELATED []
"developmental structure" RELATED []
"developmental tissue" RELATED [MIAA:0000019]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000465(material anatomical entity)



Children

is a:UBERON:0000164 (primitive urogenital sinus),UBERON:0001048 (primordium),UBERON:0002050 (embryonic structure),UBERON:0002120 (pronephros),UBERON:0002329 (somite),UBERON:0003057 (chordal neural plate),UBERON:0003059 (presomitic mesoderm),UBERON:0003061 (blood island),UBERON:0003063 (prechordal plate),UBERON:0003064 (intermediate mesoderm),UBERON:0003068 (axial mesoderm),UBERON:0003076 (posterior neural tube),UBERON:0003080 (anterior neural tube),UBERON:0004139 (cardiogenic plate),UBERON:0004871 (somatic layer of lateral plate mesoderm),UBERON:0004872 (splanchnic layer of lateral plate mesoderm),UBERON:0004874 (somatopleure),UBERON:0004875 (nephrogenic cord),UBERON:0004876 (urogenital ridge),UBERON:0004880 (chordamesoderm),UBERON:0005061 (neural groove),UBERON:0005095 (kidney rudiment),UBERON:0005294 (genital ridge),UBERON:0005754 (rostral part of nephrogenic cord),UBERON:0005868 (maxillary prominence),UBERON:0005870 (olfactory pit),UBERON:0005876 (undifferentiated genital tubercle),UBERON:0005882 (neural tube alar plate),UBERON:0006238 (future brain),UBERON:0006241 (future spinal cord),UBERON:0006268 (notochordal process),UBERON:0006283 (future cardiac ventricle),UBERON:0006598 (presumptive structure),UBERON:0006777 (tectal plate),UBERON:0006965 (vascular cord),UBERON:0007238 (1st arch maxillary component),UBERON:0007645 (future meninx),UBERON:0007687 (kidney field),UBERON:0008425 (mammary ridge),UBERON:0008836 (liver bud),UBERON:0009123 (otic cup),UBERON:0009143 (esophageal region),UBERON:0009145 (pharyngeal region of foregut),UBERON:0010056 (future tongue),UBERON:0010092 (future metencephalon),UBERON:0010096 (future myelencephalon),UBERON:0010226 (future cardiac ventricle),UBERON:0010227 (future cardiac atrium),UBERON:0010312 (immature eye),UBERON:0012314 (embryonic facial prominence)... further results

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005423 (developing anatomical structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.1e-30FFCP PHASE2:Hg19::chr20:23618584..23618603,-#_c8bc2328cea6f92a808153cad4bdea42p1@CST3
1.1e-30FFCP PHASE1:Hg19::chr20:23618584..23618603,-#_c8bc2328cea6f92a808153cad4bdea42p1@CST3
3.37e-28FFCP PHASE2:Hg19::chr13:45010939..45011033,-#_1c30faa73c72469e4c6cf418a034cc31p1@TSC22D1
3.37e-28FFCP PHASE1:Hg19::chr13:45010939..45011033,-#_1c30faa73c72469e4c6cf418a034cc31p1@TSC22D1
1.12e-27FFCP PHASE2:Hg19::chr11:1330834..1330875,-#_18be812aabfbba630f69b4517b502d8bp1@TOLLIP
1.12e-27FFCP PHASE1:Hg19::chr11:1330834..1330875,-#_18be812aabfbba630f69b4517b502d8bp1@TOLLIP
1.6e-27FFCP PHASE1:Hg19::chr13:77460532..77460548,-#_14847853eac97e796fdc0e354ddf5624p1@KCTD12
1.6e-27FFCP PHASE2:Hg19::chr13:77460532..77460548,-#_14847853eac97e796fdc0e354ddf5624p1@KCTD12
1.77e-27FFCP PHASE2:Hg19::chr7:111846435..111846471,-#_5723495597319d3128d95a76d4e52068p1@DOCK4
1.77e-27FFCP PHASE1:Hg19::chr7:111846435..111846471,-#_5723495597319d3128d95a76d4e52068p1@DOCK4
1.61e-26FFCP PHASE2:Hg19::chr16:4852616..4852679,-#_497c521e585a9f5385b429de9abf6707p1@ROGDI
1.61e-26FFCP PHASE1:Hg19::chr16:4852616..4852679,-#_497c521e585a9f5385b429de9abf6707p1@ROGDI
1.15e-25FFCP PHASE2:Hg19::chr16:2563989..2564006,+#_9e8a6c2ad21dcfd984d3b9fa0080da1dp2@ATP6V0C
1.15e-25FFCP PHASE1:Hg19::chr16:2563989..2564006,+#_9e8a6c2ad21dcfd984d3b9fa0080da1dp2@ATP6V0C
1.84e-25FFCP PHASE1:Hg19::chr8:30670289..30670354,-#_7bd934cf20edc3a2178171a8db885a9bp1@PPP2CB
1.84e-25FFCP PHASE2:Hg19::chr8:30670289..30670354,-#_7bd934cf20edc3a2178171a8db885a9bp1@PPP2CB
5.96e-25FFCP PHASE2:Hg19::chr12:112204714..112204781,+#_79ee2b6745fda0b4768f2b0f08f5ef4fp1@ALDH2
5.96e-25FFCP PHASE1:Hg19::chr12:112204714..112204781,+#_79ee2b6745fda0b4768f2b0f08f5ef4fp1@ALDH2
1.02e-24FFCP PHASE2:Hg19::chr7:2671611..2671658,+#_e591332221d4cf615d18c2eba8812e16p2@TTYH3
1.02e-24FFCP PHASE1:Hg19::chr7:2671611..2671658,+#_e591332221d4cf615d18c2eba8812e16p2@TTYH3
1.19e-24FFCP PHASE1:Hg19::chr19:44100155..44100211,-#_cd18600acb98a0d4cc51335d9c25c87dp1@IRGQ
1.19e-24FFCP PHASE2:Hg19::chr19:44100155..44100211,-#_cd18600acb98a0d4cc51335d9c25c87dp1@IRGQ
1.25e-24FFCP PHASE2:Hg19::chr15:90456156..90456198,-#_1fb3b07b1258ebebac4ea9b3d5aa0429p1@C15orf38
1.25e-24FFCP PHASE1:Hg19::chr15:90456156..90456198,-#_1fb3b07b1258ebebac4ea9b3d5aa0429p1@C15orf38
1.67e-24FFCP PHASE1:Hg19::chr10:30025922..30025958,-#_7e64711c76fcccd5f6f33d0dc1c0ba07p3@SVIL
1.67e-24FFCP PHASE2:Hg19::chr10:30025922..30025958,-#_7e64711c76fcccd5f6f33d0dc1c0ba07p3@SVIL
1.94e-24FFCP PHASE2:Hg19::chr20:35974484..35974529,+#_b47c7f9fd7678a19f7e8faf2d3074c6fp2@SRC
1.94e-24FFCP PHASE1:Hg19::chr20:35974484..35974529,+#_b47c7f9fd7678a19f7e8faf2d3074c6fp2@SRC
2.39e-24FFCP PHASE1:Hg19::chr13:77460594..77460613,-#_13af15191a25b9942ec94fa913bb7238p3@KCTD12
2.39e-24FFCP PHASE2:Hg19::chr13:77460594..77460613,-#_13af15191a25b9942ec94fa913bb7238p3@KCTD12
2.82e-24FFCP PHASE1:Hg19::chr4:85887789..85887862,-#_e701a1541096f6ee49a77442bb5f471bp1@WDFY3
2.82e-24FFCP PHASE2:Hg19::chr4:85887789..85887862,-#_e701a1541096f6ee49a77442bb5f471bp1@WDFY3
3.49e-24FFCP PHASE2:Hg19::chr2:230135937..230136016,-#_14e91b0d75c9c05874c2be65c6e739acp1@PID1
3.49e-24FFCP PHASE1:Hg19::chr2:230135937..230136016,-#_14e91b0d75c9c05874c2be65c6e739acp1@PID1
7.59e-24FFCP PHASE2:Hg19::chr17:41856305..41856363,-#_4af168a759a9960ca5c7e12b67f90d78p1@DUSP3
7.59e-24FFCP PHASE1:Hg19::chr17:41856305..41856363,-#_4af168a759a9960ca5c7e12b67f90d78p1@DUSP3
7.64e-24FFCP PHASE2:Hg19::chr11:65082349..65082378,+#_d062585ef3f0b07d2a179b39206dc8acp1@CDC42EP2
7.64e-24FFCP PHASE1:Hg19::chr11:65082349..65082378,+#_d062585ef3f0b07d2a179b39206dc8acp1@CDC42EP2
1.05e-23FFCP PHASE1:Hg19::chr17:73851380..73851427,-#_a38606940e10fe8d0d4aa76ecae9d75cp1@WBP2
1.05e-23FFCP PHASE2:Hg19::chr17:73851380..73851427,-#_a38606940e10fe8d0d4aa76ecae9d75cp1@WBP2
1.35e-23FFCP PHASE2:Hg19::chr19:40871734..40871809,+#_93d4600301b224933a844d621e7c9897p1@PLD3
1.35e-23FFCP PHASE1:Hg19::chr19:40871734..40871809,+#_93d4600301b224933a844d621e7c9897p1@PLD3
1.78e-23FFCP PHASE1:Hg19::chr17:1466030..1466129,-#_c99501c4fcf87e5cee001b7bde4963aap1@PITPNA
1.78e-23FFCP PHASE2:Hg19::chr17:1466030..1466129,-#_c99501c4fcf87e5cee001b7bde4963aap1@PITPNA
1.96e-23FFCP PHASE1:Hg19::chr2:127864839..127864888,-#_33d543cdd2e88c5aa12d5a3efd4a3020p2@BIN1
1.96e-23FFCP PHASE2:Hg19::chr2:127864839..127864888,-#_33d543cdd2e88c5aa12d5a3efd4a3020p2@BIN1
2.04e-23FFCP PHASE1:Hg19::chr19:6720653..6720670,-#_1144f210c983beb439edc552317f85f0p1@C3
2.04e-23FFCP PHASE2:Hg19::chr19:6720653..6720670,-#_1144f210c983beb439edc552317f85f0p1@C3
2.36e-23FFCP PHASE2:Hg19::chr2:24272576..24272619,+#_7d567ea717eb79380d591c096c060123p1@FKBP1B
2.36e-23FFCP PHASE1:Hg19::chr2:24272576..24272619,+#_7d567ea717eb79380d591c096c060123p1@FKBP1B
2.94e-23FFCP PHASE2:Hg19::chr2:127864608..127864688,-#_c592f60ae3b65cd0889055826159e898p1@BIN1
2.94e-23FFCP PHASE1:Hg19::chr2:127864608..127864688,-#_c592f60ae3b65cd0889055826159e898p1@BIN1
3.65e-23FFCP PHASE1:Hg19::chr8:28559004..28559039,+#_95083cdf582bb799f6156f66a3d444f7p1@EXTL3
3.65e-23FFCP PHASE2:Hg19::chr8:28559004..28559039,+#_95083cdf582bb799f6156f66a3d444f7p1@EXTL3
1.26e-22FFCP PHASE2:Hg19::chr17:7492684..7492778,-#_b770b91d79216c945ff95549e00f7ee7p2@SOX15
1.26e-22FFCP PHASE1:Hg19::chr17:7492684..7492778,-#_b770b91d79216c945ff95549e00f7ee7p2@SOX15
3.29e-22FFCP PHASE1:Hg19::chr2:153191678..153191697,+#_aea37ecfb76bc2d3f413ad65b70c8b6dp1@FMNL2
3.29e-22FFCP PHASE2:Hg19::chr2:153191678..153191697,+#_aea37ecfb76bc2d3f413ad65b70c8b6dp1@FMNL2
3.95e-22FFCP PHASE1:Hg19::chr4:24914581..24914691,-#_d14bc020330401d1246937480e066f27p1@CCDC149
3.95e-22FFCP PHASE2:Hg19::chr4:24914581..24914691,-#_d14bc020330401d1246937480e066f27p1@CCDC149
4.99e-22FFCP PHASE1:Hg19::chr9:34989685..34989748,+#_f41ee4733083109705246af75c88bda7p1@DNAJB5
4.99e-22FFCP PHASE2:Hg19::chr9:34989685..34989748,+#_f41ee4733083109705246af75c88bda7p1@DNAJB5
8.51e-22FFCP PHASE2:Hg19::chr10:125853048..125853095,-#_712acdccb9a259badd6a3f77bd4dfda1p2@CHST15
8.51e-22FFCP PHASE1:Hg19::chr10:125853048..125853095,-#_712acdccb9a259badd6a3f77bd4dfda1p2@CHST15
9.21e-22FFCP PHASE2:Hg19::chr12:52345448..52345532,+#_14e16ca39cc7722e96d7bc28751fb614p1@ACVR1B
9.21e-22FFCP PHASE1:Hg19::chr12:52345448..52345532,+#_14e16ca39cc7722e96d7bc28751fb614p1@ACVR1B
9.91e-22FFCP PHASE1:Hg19::chr10:118764649..118764683,-#_f06076c7150ce783b1db3a758dbf9403p2@KIAA1598
9.91e-22FFCP PHASE2:Hg19::chr10:118764649..118764683,-#_f06076c7150ce783b1db3a758dbf9403p2@KIAA1598
1.35e-21FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_74315ad8c5df39eebdc4c5e1093b8fa3p1@NFIB
1.35e-21FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_74315ad8c5df39eebdc4c5e1093b8fa3p1@NFIB
1.36e-21FFCP PHASE1:Hg19::chr4:159094160..159094185,-#_b70359ebe41fcdfbf565fcc28d6cf40dp2@FAM198B
1.36e-21FFCP PHASE2:Hg19::chr4:159094160..159094185,-#_b70359ebe41fcdfbf565fcc28d6cf40dp2@FAM198B
1.86e-21FFCP PHASE1:Hg19::chr9:14314131..14314147,-#_882890e2f71af13dbcf1afaa1704171bp2@NFIB
1.86e-21FFCP PHASE2:Hg19::chr9:14314131..14314147,-#_882890e2f71af13dbcf1afaa1704171bp2@NFIB
1.98e-21FFCP PHASE1:Hg19::chr16:2563941..2563983,+#_22e5cc8bc7fb79ee1a6aa4c7bb0ec04fp1@ATP6V0C
1.98e-21FFCP PHASE2:Hg19::chr16:2563941..2563983,+#_22e5cc8bc7fb79ee1a6aa4c7bb0ec04fp1@ATP6V0C
2.43e-21FFCP PHASE1:Hg19::chr1:249132556..249132573,+#_a38bb88dd224dfcd2f9f05bc62208836p3@ZNF672
2.43e-21FFCP PHASE2:Hg19::chr1:249132556..249132573,+#_a38bb88dd224dfcd2f9f05bc62208836p3@ZNF672
3.46e-21FFCP PHASE1:Hg19::chr6:47277634..47277651,-#_a334885461d90371daab96462e45b480p1@TNFRSF21
3.46e-21FFCP PHASE2:Hg19::chr6:47277634..47277651,-#_a334885461d90371daab96462e45b480p1@TNFRSF21
4.11e-21FFCP PHASE1:Hg19::chr1:10270620..10270637,+#_c23f85651e5574320f7da329d36e6cccp1@KIF1B
4.11e-21FFCP PHASE2:Hg19::chr1:10270620..10270637,+#_c23f85651e5574320f7da329d36e6cccp1@KIF1B
4.93e-21FFCP PHASE1:Hg19::chr1:20812134..20812149,-#_99b9e921d801f87132a6db7a3f852bb3p3@CAMK2N1
4.93e-21FFCP PHASE2:Hg19::chr1:20812134..20812149,-#_99b9e921d801f87132a6db7a3f852bb3p3@CAMK2N1
6.89e-21FFCP PHASE2:Hg19::chr16:89787269..89787359,-#_3a141f5d8d8bd48581ec9b938d9322c2p1@C16orf7
6.89e-21FFCP PHASE1:Hg19::chr16:89787269..89787359,-#_3a141f5d8d8bd48581ec9b938d9322c2p1@C16orf7
1.27e-20FFCP PHASE1:Hg19::chr13:77460635..77460654,-#_a8534a3152b6202a14bca26583eb557bp2@KCTD12
1.27e-20FFCP PHASE2:Hg19::chr13:77460635..77460654,-#_a8534a3152b6202a14bca26583eb557bp2@KCTD12
1.56e-20FFCP PHASE1:Hg19::chr19:14228541..14228582,-#_2d93977d9006bfea4b2beba9b3ba3aeep1@PRKACA
1.56e-20FFCP PHASE2:Hg19::chr19:14228541..14228582,-#_2d93977d9006bfea4b2beba9b3ba3aeep1@PRKACA
1.68e-20FFCP PHASE1:Hg19::chr1:20812315..20812327,-#_a9e47211a8951f4dff2eeaa1b370dec8p4@CAMK2N1
1.68e-20FFCP PHASE2:Hg19::chr1:20812315..20812327,-#_a9e47211a8951f4dff2eeaa1b370dec8p4@CAMK2N1
1.93e-20FFCP PHASE1:Hg19::chr1:23037323..23037338,+#_a6279bb357a1b41911f957ee4276502dp1@EPHB2
1.93e-20FFCP PHASE2:Hg19::chr1:23037323..23037338,+#_a6279bb357a1b41911f957ee4276502dp1@EPHB2
1.95e-20FFCP PHASE1:Hg19::chr1:183774240..183774270,+#_8aefa6b95b3767eccec44ce7b3d96d38p1@RGL1
1.95e-20FFCP PHASE2:Hg19::chr1:183774240..183774270,+#_8aefa6b95b3767eccec44ce7b3d96d38p1@RGL1
1.97e-20FFCP PHASE2:Hg19::chr17:7531121..7531198,-#_182be4a55efe8df95d67b8cc498af432p1@SAT2
1.97e-20FFCP PHASE1:Hg19::chr17:7531121..7531198,-#_182be4a55efe8df95d67b8cc498af432p1@SAT2
2.48e-20FFCP PHASE1:Hg19::chr3:9811595..9811666,-#_9c26f69d2dd986d0fddc10e9fbb8fa91p1@CAMK1
2.48e-20FFCP PHASE2:Hg19::chr3:9811595..9811666,-#_9c26f69d2dd986d0fddc10e9fbb8fa91p1@CAMK1

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005423&oldid=3277779"