UBERON:0009663: Difference between revisions

Latest revision as of 18:06, 12 September 2014

Name:

telencephalic nucleus

Namespace:

FANTOM

Xrefs:

links:

TAO:0002178

ZFA:0001660

Ontology association Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies. link to ontology dataset data

Parents

is_a:	UBERON:0002308(nucleus of brain),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:	UBERON:0001893(telencephalon)

Children

is a:	UBERON:0001873 (caudate nucleus),UBERON:0001874 (putamen),UBERON:0001875 (globus pallidus),UBERON:0001882 (nucleus accumbens)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

10037-101F1 (nucleus accumbens, adult, pool1)
10152-102I8 (putamen, adult, donor10252)
10158-103A5 (substantia nigra, adult, donor10252)
10161-103A8 (globus pallidus, adult, donor10252)
10164-103B2 (caudate nucleus, adult, donor10252)
10175-103C4 (globus pallidus - adult, donor10196)
10176-103C5 (putamen, adult, donor10196)
10177-103C6 (caudate nucleus - adult, donor10196)
10178-103C7 (substantia nigra - adult, donor10196)
10354-105E3 (caudate nucleus, newborn, donor10223)

... further results Mouse (Mus musculus)

10037-101F1 (nucleus accumbens, adult, pool1)
10152-102I8 (putamen, adult, donor10252)
10158-103A5 (substantia nigra, adult, donor10252)
10161-103A8 (globus pallidus, adult, donor10252)
10164-103B2 (caudate nucleus, adult, donor10252)
10175-103C4 (globus pallidus - adult, donor10196)
10176-103C5 (putamen, adult, donor10196)
10177-103C6 (caudate nucleus - adult, donor10196)
10178-103C7 (substantia nigra - adult, donor10196)
10354-105E3 (caudate nucleus, newborn, donor10223)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009663 (telencephalic nucleus), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
1.16e-143	FFCP PHASE1:Hg19::chr2:7112752..7112770,+	p@chr2:7112752..7112770, +
1.16e-143	FFCP PHASE2:Hg19::chr2:7112752..7112770,+	p@chr2:7112752..7112770, +
1.48e-143	FFCP PHASE2:Hg19::chr22:27727810..27727817,+	p3@ENST00000413244
1.48e-143	FFCP PHASE1:Hg19::chr22:27727810..27727817,+	p3@ENST00000413244
6.94e-140	FFCP PHASE1:Hg19::chr2:3853961..3853984,+	p@chr2:3853961..3853984, +
6.94e-140	FFCP PHASE2:Hg19::chr2:3853961..3853984,+	p@chr2:3853961..3853984, +
6.94e-140	FFCP PHASE2:Hg19::chr17:19390211..19390223,+	p@chr17:19390211..19390223, +
6.94e-140	FFCP PHASE1:Hg19::chr15:35546024..35546035,-	p@chr15:35546024..35546035, -
6.94e-140	FFCP PHASE1:Hg19::chr17:19390211..19390223,+	p@chr17:19390211..19390223, +
6.94e-140	FFCP PHASE2:Hg19::chr15:35546024..35546035,-	p@chr15:35546024..35546035, -
4.37e-126	FFCP PHASE2:Hg19::chr11:18765839..18765846,-	p10@PTPN5
4.37e-126	FFCP PHASE1:Hg19::chr11:18765839..18765846,-	p10@PTPN5
7.13e-117	FFCP PHASE1:Hg19::chr10:97261901..97261919,-	p@chr10:97261901..97261919, -
7.13e-117	FFCP PHASE2:Hg19::chr10:97261901..97261919,-	p@chr10:97261901..97261919, -
7.13e-117	FFCP PHASE2:Hg19::chr11:26497871..26497889,+	p@chr11:26497871..26497889, +
7.13e-117	FFCP PHASE1:Hg19::chr11:26497871..26497889,+	p@chr11:26497871..26497889, +
9.06e-117	FFCP PHASE1:Hg19::chr1:242372439..242372456,+	p1@ENST00000421878
9.06e-117	FFCP PHASE1:Hg19::chr19:1236637..1236645,-	p@chr19:1236637..1236645, -
9.06e-117	FFCP PHASE1:Hg19::chr11:26495467..26495474,+	p8@ANO3
9.06e-117	FFCP PHASE2:Hg19::chr19:1236637..1236645,-	p@chr19:1236637..1236645, -
9.06e-117	FFCP PHASE2:Hg19::chr11:26495467..26495474,+	p8@ANO3
9.06e-117	FFCP PHASE2:Hg19::chr1:242372439..242372456,+	p1@ENST00000421878
9.06e-117	FFCP PHASE2:Hg19::chr22:24828830..24828842,+	p14@ADORA2A
9.06e-117	FFCP PHASE1:Hg19::chr22:24828830..24828842,+	p14@ADORA2A
9.29e-115	FFCP PHASE2:Hg19::chr11:67174819..67174825,-	p14@PPP1CA
9.29e-115	FFCP PHASE1:Hg19::chr11:67174819..67174825,-	p14@PPP1CA
1.7e-112	FFCP PHASE1:Hg19::chr17:19390234..19390251,+	p@chr17:19390234..19390251, +
1.7e-112	FFCP PHASE2:Hg19::chr17:19390234..19390251,+	p@chr17:19390234..19390251, +
2.06e-112	FFCP PHASE2:Hg19::chr3:35722978..35722999,+	p28@ARPP21
2.06e-112	FFCP PHASE1:Hg19::chr3:35722978..35722999,+	p28@ARPP21
2.5e-112	FFCP PHASE1:Hg19::chr11:26495447..26495461,+	p5@ANO3
2.5e-112	FFCP PHASE2:Hg19::chr11:26495447..26495461,+	p5@ANO3
2.5e-112	FFCP PHASE1:Hg19::chr10:73313437..73313451,-	p@chr10:73313437..73313451, -
2.5e-112	FFCP PHASE2:Hg19::chr10:73313437..73313451,-	p@chr10:73313437..73313451, -
3.03e-112	FFCP PHASE1:Hg19::chr3:16851273..16851310,+	p@chr3:16851273..16851310, +
3.03e-112	FFCP PHASE2:Hg19::chr3:16851273..16851310,+	p@chr3:16851273..16851310, +
3.15e-112	FFCP PHASE1:Hg19::chr7:29846088..29846091,+	p20@WIPF3
3.15e-112	FFCP PHASE1:Hg19::chr7:22382758..22382765,-	p@chr7:22382758..22382765, -
3.15e-112	FFCP PHASE1:Hg19::chr1:31352916..31352926,-	p@chr1:31352916..31352926, -
3.15e-112	FFCP PHASE2:Hg19::chr18:47967428..47967437,-	p@chr18:47967428..47967437, -
3.15e-112	FFCP PHASE2:Hg19::chr12:6031299..6031315,-	p@chr12:6031299..6031315, -
3.15e-112	FFCP PHASE1:Hg19::chr14:78638610..78638621,+	p@chr14:78638610..78638621, +
3.15e-112	FFCP PHASE2:Hg19::chr13:112726433..112726446,+	p@chr13:112726433..112726446, +
3.15e-112	FFCP PHASE2:Hg19::chr8:25281776..25281779,-	p1@GNRH1
3.15e-112	FFCP PHASE1:Hg19::chr13:112726433..112726446,+	p@chr13:112726433..112726446, +
3.15e-112	FFCP PHASE2:Hg19::chr14:78638610..78638621,+	p@chr14:78638610..78638621, +
3.15e-112	FFCP PHASE1:Hg19::chr18:47967428..47967437,-	p@chr18:47967428..47967437, -
3.15e-112	FFCP PHASE2:Hg19::chr7:22382758..22382765,-	p@chr7:22382758..22382765, -
3.15e-112	FFCP PHASE2:Hg19::chr2:152828264..152828299,-	p@chr2:152828264..152828299, -
3.15e-112	FFCP PHASE1:Hg19::chr2:152828264..152828299,-	p@chr2:152828264..152828299, -
3.15e-112	FFCP PHASE1:Hg19::chr8:19799565..19799589,-	p@chr8:19799565..19799589, -
3.15e-112	FFCP PHASE1:Hg19::chr12:6031299..6031315,-	p@chr12:6031299..6031315, -
3.15e-112	FFCP PHASE2:Hg19::chr1:31352916..31352926,-	p@chr1:31352916..31352926, -
3.15e-112	FFCP PHASE1:Hg19::chr15:35546154..35546174,-	p@chr15:35546154..35546174, -
3.15e-112	FFCP PHASE1:Hg19::chr8:25281776..25281779,-	p1@GNRH1
3.15e-112	FFCP PHASE2:Hg19::chr15:35546154..35546174,-	p@chr15:35546154..35546174, -
3.15e-112	FFCP PHASE2:Hg19::chr8:19799565..19799589,-	p@chr8:19799565..19799589, -
3.15e-112	FFCP PHASE2:Hg19::chr7:29846088..29846091,+	p20@WIPF3
3.67e-112	FFCP PHASE1:Hg19::chr7:67899920..67899958,-	p@chr7:67899920..67899958, -
3.67e-112	FFCP PHASE2:Hg19::chr7:67899920..67899958,-	p@chr7:67899920..67899958, -
1.8e-101	FFCP PHASE2:Hg19::chr6:166076645..166076657,-	p@chr6:166076645..166076657, -
1.8e-101	FFCP PHASE1:Hg19::chr6:166076645..166076657,-	p@chr6:166076645..166076657, -
2.15e-101	FFCP PHASE1:Hg19::chr22:27727719..27727726,+	p2@ENST00000413244
2.15e-101	FFCP PHASE1:Hg19::chr11:18765589..18765610,-	p6@PTPN5
2.15e-101	FFCP PHASE2:Hg19::chr22:27727719..27727726,+	p2@ENST00000413244
2.15e-101	FFCP PHASE2:Hg19::chr11:18765589..18765610,-	p6@PTPN5
7.2e-101	FFCP PHASE2:Hg19::chr21:43917191..43917207,-	p@chr21:43917191..43917207, -
7.2e-101	FFCP PHASE1:Hg19::chr21:43917191..43917207,-	p@chr21:43917191..43917207, -
1.61e-100	FFCP PHASE2:Hg19::chr13:98995904..98995913,+	p@chr13:98995904..98995913, +
1.61e-100	FFCP PHASE2:Hg19::chr6:80472250..80472261,+	p@chr6:80472250..80472261, +
1.61e-100	FFCP PHASE1:Hg19::chr6:80472250..80472261,+	p@chr6:80472250..80472261, +
1.61e-100	FFCP PHASE1:Hg19::chr13:98995904..98995913,+	p@chr13:98995904..98995913, +
2.42e-100	FFCP PHASE1:Hg19::chr1:101003738..101003747,+	p9@GPR88
2.42e-100	FFCP PHASE1:Hg19::chr11:80886203..80886231,+	p@chr11:80886203..80886231, +
2.42e-100	FFCP PHASE2:Hg19::chr1:101003738..101003747,+	p9@GPR88
2.42e-100	FFCP PHASE2:Hg19::chr11:80886203..80886231,+	p@chr11:80886203..80886231, +
2.97e-100	FFCP PHASE2:Hg19::chr20:9495125..9495132,+	p17@LAMP5
2.97e-100	FFCP PHASE1:Hg19::chr20:9495125..9495132,+	p17@LAMP5
2.97e-100	FFCP PHASE1:Hg19::chr5:79866189..79866202,+	p@chr5:79866189..79866202, +
2.97e-100	FFCP PHASE2:Hg19::chr5:79866189..79866202,+	p@chr5:79866189..79866202, +
1.9e-92	FFCP PHASE2:Hg19::chr12:122181551..122181562,+	p@chr12:122181551..122181562, +
1.9e-92	FFCP PHASE1:Hg19::chr12:122181551..122181562,+	p@chr12:122181551..122181562, +
2.6e-92	FFCP PHASE1:Hg19::chr11:120690389..120690422,+	p@chr11:120690389..120690422, +
2.6e-92	FFCP PHASE2:Hg19::chr11:120690389..120690422,+	p@chr11:120690389..120690422, +
3.52e-90	FFCP PHASE1:Hg19::chr10:97261874..97261887,-	p@chr10:97261874..97261887, -
3.52e-90	FFCP PHASE2:Hg19::chr2:127783377..127783391,+	p2@BC051739
3.52e-90	FFCP PHASE2:Hg19::chr12:11652913..11652927,+	p@chr12:11652913..11652927, +
3.52e-90	FFCP PHASE2:Hg19::chr10:97261874..97261887,-	p@chr10:97261874..97261887, -
3.52e-90	FFCP PHASE1:Hg19::chr12:11652913..11652927,+	p@chr12:11652913..11652927, +
3.52e-90	FFCP PHASE1:Hg19::chr3:57807798..57807809,+	p@chr3:57807798..57807809, +
3.52e-90	FFCP PHASE2:Hg19::chr3:57807798..57807809,+	p@chr3:57807798..57807809, +
3.52e-90	FFCP PHASE1:Hg19::chr20:9496091..9496106,+	p@chr20:9496091..9496106, +
3.52e-90	FFCP PHASE2:Hg19::chr20:9496091..9496106,+	p@chr20:9496091..9496106, +
3.52e-90	FFCP PHASE1:Hg19::chr2:127783377..127783391,+	p2@BC051739
4.43e-90	FFCP PHASE2:Hg19::chr11:130011708..130011717,+	p18@APLP2
4.43e-90	FFCP PHASE1:Hg19::chr11:130011708..130011717,+	p18@APLP2
4.43e-90	FFCP PHASE2:Hg19::chr6:145132414..145132428,+	p@chr6:145132414..145132428, +
4.43e-90	FFCP PHASE1:Hg19::chr6:145132414..145132428,+	p@chr6:145132414..145132428, +
5.58e-90	FFCP PHASE1:Hg19::chr3:156008856..156008863,+	p23@KCNAB1
5.58e-90	FFCP PHASE2:Hg19::chr3:156008856..156008863,+	p23@KCNAB1

Showing 1 to 100 of 100 entries

@@ Line 13: / Line 13: @@
 |located_in=
 |name=telencephalic nucleus
-|namespace=
+|namespace=FANTOM
 |obo_creation_date=
 |part_of=UBERON:0001893

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Latest revision as of 18:06, 12 September 2014

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