UBERON:0009663: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0009663
|name=telencephalic nucleus
|namespace=
|def=
|xref=TAO:0002178;;ZFA:0001660
|is_a=UBERON:0002308;;UBERON:0002791
|synonym=
|comment=
|alt...") |
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{{UBERON | {{UBERON | ||
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|comment= | |comment= | ||
|created_by= | |created_by= | ||
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|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0009663 | |||
|is_a=UBERON:0002308 ;;UBERON:0010314 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=telencephalic nucleus | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001893 | |part_of=UBERON:0001893 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
|synonym= | |||
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|xref=TAO:0002178;;ZFA:0001660 | |||
}} | }} | ||
Latest revision as of 18:06, 12 September 2014
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002308(nucleus of brain),UBERON:0010314(structure with developmental contribution from neural crest) |
|---|---|
| part_of: | UBERON:0001893(telencephalon) |
Children
| is a: | UBERON:0001873 (caudate nucleus),UBERON:0001874 (putamen),UBERON:0001875 (globus pallidus),UBERON:0001882 (nucleus accumbens) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10152-102I8 (putamen, adult, donor10252)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10161-103A8 (globus pallidus, adult, donor10252)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10175-103C4 (globus pallidus - adult, donor10196)
- 10176-103C5 (putamen, adult, donor10196)
- 10177-103C6 (caudate nucleus - adult, donor10196)
- 10178-103C7 (substantia nigra - adult, donor10196)
- 10354-105E3 (caudate nucleus, newborn, donor10223)
... further results Mouse (Mus musculus)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10152-102I8 (putamen, adult, donor10252)
- 10158-103A5 (substantia nigra, adult, donor10252)
- 10161-103A8 (globus pallidus, adult, donor10252)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10175-103C4 (globus pallidus - adult, donor10196)
- 10176-103C5 (putamen, adult, donor10196)
- 10177-103C6 (caudate nucleus - adult, donor10196)
- 10178-103C7 (substantia nigra - adult, donor10196)
- 10354-105E3 (caudate nucleus, newborn, donor10223)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009663 (telencephalic nucleus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
