FFCP PHASE1:Hg19::chr10:3668321..3668343,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:3668321..3668343,- | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_at_chr10:3668321..3668343,- | |description=CAGE_peak_at_chr10:3668321..3668343,- | ||
|id=chr10:3668321..3668343,- | |id=chr10:3668321..3668343,- | ||
|ontology_enrichment_celltype=CL:0002556!2.23e-08!6;CL:0000055!1.10e-07!180;CL:0002541!4.20e-07!3;CL:0000349!4.64e-07!3;CL:0002577!4.64e-07!3 | |ontology_enrichment_celltype=CL:0002556!2.23e-08!6;CL:0000055!1.10e-07!180;CL:0002541!4.20e-07!3;CL:0000349!4.64e-07!3;CL:0002577!4.64e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000349;5.03e-31;19!CL:0002561;5.62e-16;2!CL:0002536;8.49e-16;2!CL:0002537;1.33e-14;5!CL:0002541;2.29e-11;3!CL:0002577;6.28e-11;3!CL:0000319;1.59e-08;1!CL:0002559;6.55e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,5.90e-31,19;CL:0002561,5.02e-16,2;CL:0002536,1.06e-15,2;CL:0002537,1.30e-14,5;CL:0002541,2.29e-11,3;CL:0002577,6.95e-11,3;CL:0000319,1.13e-08,1;CL:0002559,6.27e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0003124;9.02e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3112;4.18e-09;1!DOID:3030;1.59e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,4.19e-09,1;DOID:3030,1.13e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!5.11e-20!14;UBERON:0000158!5.11e-20!14;UBERON:0003124!2.28e-14!7;UBERON:0000478!3.02e-10!24;UBERON:0001987!6.26e-09!4;UBERON:0004340!6.26e-09!4;UBERON:0001758!2.23e-08!6;UBERON:0003672!2.23e-08!6;UBERON:0000305!7.43e-08!7;UBERON:0000476!4.20e-07!3;UBERON:0000920!4.20e-07!3;UBERON:0004871!8.68e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.05e-36;10!UBERON:0000158;1.05e-36;10!UBERON:0000478;6.41e-30;24!UBERON:0000305;4.44e-27;7!UBERON:0001987;2.30e-17;4!UBERON:0005933;5.62e-16;2!UBERON:0005942;5.62e-16;2!UBERON:0005932;5.62e-16;2!UBERON:0003124;2.29e-11;3!UBERON:0000920;2.29e-11;3!UBERON:0007195;4.52e-09;1!UBERON:0002073;6.55e-07;5!UBERON:0004923;6.75e-07;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.80e-52,14;UBERON:0000158,2.80e-52,14;UBERON:0000478,7.61e-30,24;UBERON:0000305,5.08e-27,7;UBERON:0003124,7.39e-27,7;UBERON:0004871,1.24e-23,8;UBERON:0001987,2.72e-17,4;UBERON:0004340,2.72e-17,4;UBERON:0005933,5.02e-16,2;UBERON:0005942,5.02e-16,2;UBERON:0005932,5.02e-16,2;UBERON:0004923,3.34e-14,66;UBERON:0000920,2.29e-11,3;UBERON:0007195,4.52e-09,1;UBERON:0002073,6.27e-07,5;UBERON:0005086,6.27e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,6.55324116390517,1.05506791291381,0.495065411840187,0.662794751455832,0,0,0,0,0,0.408001382488506,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269421344139376,0.163461903113459,0,0,0,0,0,0,0,0.323745888736263,0.842704840213491,1.63323337003915,1.22834317311768,0.206651562351531,0,0,0,0,0.505008341862199,0.750711119231785,2.77064115484183,0,0.612975591598039,0.45071417671979,0.113432183160021,0.179389635688862,0,0,0,0,0.257640540045629,0.37223371266318,0,0,0.252433774244115,0,0,0,0,0.339121184620975,0,0,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,4.17931135228781,2.88751792667834,0.236613600079688,0,0,0,0.435758888184812,0,0.134831308160164,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0.651616610620649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22001485746285,0,0,0,0,0,1.28603687131071,2.83698264046557,0.799266537048298,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,0,0.542530047399471,0.207970861530807,0,0,0,0.300946099727719,0,0,0,0.184369168541703,0.173767228936166,0,0,0,0,0,2.42502057157008,3.32870879020994,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0.131124414959424,0,0,0,0,0,0,0,0.215915916102139,0,0,0,1.52925763827023,0,0.447749509444357,0.219259876645935,0,0.256450125116389,0,0,0.206082023295445,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0.429680979473094,0.290033387828457,0.0852266274161009,0,0,0,0.255225424989168,0,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0.632758849437452,0.38126038784765,1.02359116524534,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0.75894634753143,1.04980416073495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,52.2850421575541,6.83018765915069,57.4390512925564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.1136990144637,0,0,0,0,0,0,0,0,0.945550727071745,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,0.217294743844016,30.9431124939962,0.366390373607449,19.1892519366708,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.957651272384428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0,0,0,1.40963004463334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,4.40030541129469,0,0,0,0.192619830407303,0,0,0.226705925512272,0.463044948647668,0,0,0,0,1.06013487567529,0,0,0,0,0,0,0,0,0,0,1.72041036127604,0,0,0,0,9.08025525706937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.346576998451015,0.381382095467167,0,0,0,0,0,0,15.5583321634592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7497734750418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213454691755431,0,0,0,0.244482888365733,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,6.55324116390517,1.05506791291381,0.495065411840187,0.662794751455832,0,0,0,0,0,0.408001382488506,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269421344139376,0.163461903113459,0,0,0,0,0,0,0,0.323745888736263,0.842704840213491,1.63323337003915,1.22834317311768,0.206651562351531,0,0,0,0,0.505008341862199,0.750711119231785,2.77064115484183,0,0.612975591598039,0.45071417671979,0.113432183160021,0.179389635688862,0,0,0,0,0.257640540045629,0.37223371266318,0,0,0.252433774244115,0,0,0,0,0.339121184620975,0,0,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,4.17931135228781,2.88751792667834,0.236613600079688,0,0,0,0.435758888184812,0,0.134831308160164,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0.651616610620649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22001485746285,0,0,0,0,0,1.28603687131071,2.83698264046557,0.799266537048298,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,0,0.542530047399471,0.207970861530807,0,0,0,0.300946099727719,0,0,0,0.184369168541703,0.173767228936166,0,0,0,0,0,2.42502057157008,3.32870879020994,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0.131124414959424,0,0,0,0,0,0,0,0.215915916102139,0,0,0,1.52925763827023,0,0.447749509444357,0.219259876645935,0,0.256450125116389,0,0,0.206082023295445,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0.429680979473094,0.290033387828457,0.0852266274161009,0,0,0,0.255225424989168,0,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0.632758849437452,0.38126038784765,1.02359116524534,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0.75894634753143,1.04980416073495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,52.2850421575541,6.83018765915069,57.4390512925564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.1136990144637,0,0,0,0,0,0,0,0,0.945550727071745,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,0.217294743844016,30.9431124939962,0.366390373607449,19.1892519366708,0,0,0,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.957651272384428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0,0,0,1.40963004463334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,4.40030541129469,0,0,0,0.192619830407303,0,0,0.226705925512272,0.463044948647668,0,0,0,0,1.06013487567529,0,0,0,0,0,0,0,0,0,0,1.72041036127604,0,0,0,0,9.08025525706937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.346576998451015,0.381382095467167,0,0,0,0,0,0,15.5583321634592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7497734750418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213454691755431,0,0,0,0.244482888365733,0,0,0,0 | ||
|short_description=p@chr10:3668321..3668343,- | |short_description=p@chr10:3668321..3668343,- | ||
}} | }} |
Latest revision as of 13:28, 23 July 2015
Short description: | p@chr10:3668321..3668343, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:3668321..3668343, - |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 5.90e-31 | 19 |
outer root sheath cell | 5.02e-16 | 2 |
amniotic epithelial cell | 1.06e-15 | 2 |
amnion mesenchymal stem cell | 1.30e-14 | 5 |
chorionic membrane mesenchymal stem cell | 2.29e-11 | 3 |
placental epithelial cell | 6.95e-11 | 3 |
mucus secreting cell | 1.13e-08 | 1 |
hair follicle cell | 6.27e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.80e-52 | 14 |
membranous layer | 2.80e-52 | 14 |
extraembryonic structure | 7.61e-30 | 24 |
amnion | 5.08e-27 | 7 |
chorion | 7.39e-27 | 7 |
somatic layer of lateral plate mesoderm | 1.24e-23 | 8 |
placenta | 2.72e-17 | 4 |
allantois | 2.72e-17 | 4 |
hair root sheath | 5.02e-16 | 2 |
hair outer root sheath | 5.02e-16 | 2 |
bulb of hair follicle | 5.02e-16 | 2 |
organ component layer | 3.34e-14 | 66 |
egg chorion | 2.29e-11 | 3 |
stroma of bone marrow | 4.52e-09 | 1 |
hair follicle | 6.27e-07 | 5 |
hair follicle placode | 6.27e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 4.19e-09 | 1 |
mucinous adenocarcinoma | 1.13e-08 | 1 |