FFCP PHASE1:Hg19::chr12:127544950..127544961,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-4bp_to_ENST00000540244_5end | |association_with_transcript=-4bp_to_ENST00000540244_5end | ||
|cluster_id=chr12:127544950..127544961,- | |||
|description=CAGE_peak_1_at_ENST00000540244_5end | |description=CAGE_peak_1_at_ENST00000540244_5end | ||
|id=chr12:127544950..127544961,- | |id=chr12:127544950..127544961,- | ||
|ontology_enrichment_celltype=CL:0002563!9.72e-07!4 | |ontology_enrichment_celltype=CL:0002563!9.72e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002553;3.96e-07;1!CL:0002563;5.43e-07;4 | |ontology_enrichment_celltype_v019=CL:0002553;3.96e-07;1!CL:0002563;5.43e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002553,3.02e-07,1;CL:0002563,6.59e-07,4 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:0050687!1.52e-11!143;DOID:162!1.22e-09!235;DOID:14566!3.16e-09!239;DOID:305!2.61e-07!106;DOID:0050615!3.17e-07!16 | |ontology_enrichment_disease=DOID:0050687!1.52e-11!143;DOID:162!1.22e-09!235;DOID:14566!3.16e-09!239;DOID:305!2.61e-07!106;DOID:0050615!3.17e-07!16 | ||
|ontology_enrichment_disease_v019=DOID:1909;1.37e-12;2!DOID:0060085;3.96e-07;1!DOID:3165;3.96e-07;1!DOID:0060121;3.96e-07;1!DOID:2438;3.96e-07;1!DOID:4418;3.96e-07;1!DOID:1115;4.56e-07;20 | |ontology_enrichment_disease_v019=DOID:1909;1.37e-12;2!DOID:0060085;3.96e-07;1!DOID:3165;3.96e-07;1!DOID:0060121;3.96e-07;1!DOID:2438;3.96e-07;1!DOID:4418;3.96e-07;1!DOID:1115;4.56e-07;20 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,9.05e-13,2;DOID:0050687,1.45e-12,143;DOID:162,1.17e-08,235;DOID:14566,2.22e-08,239;DOID:0060085,2.52e-07,1;DOID:3165,2.52e-07,1;DOID:0060121,2.52e-07,1;DOID:2438,2.52e-07,1;DOID:4418,2.52e-07,1;DOID:1115,3.70e-07,20;DOID:305,4.62e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0005409!2.68e-13!35;UBERON:0000160!1.86e-11!27;UBERON:0000059!3.13e-11!11;UBERON:0001155!3.03e-10!9;UBERON:0004907!5.46e-09!5;UBERON:0001007!6.48e-09!155;UBERON:0001555!6.48e-09!155;UBERON:0007026!6.48e-09!155;UBERON:0004921!1.56e-08!129;UBERON:0004185!1.56e-08!129;UBERON:0004119!2.79e-08!169;UBERON:0000925!2.79e-08!169;UBERON:0006595!2.79e-08!169;UBERON:0001052!6.83e-07!4;UBERON:0001242!9.72e-07!4;UBERON:0001262!9.72e-07!4;UBERON:0004786!9.72e-07!4;UBERON:0004808!9.72e-07!4;UBERON:0001277!9.72e-07!4 | |ontology_enrichment_uberon=UBERON:0005409!2.68e-13!35;UBERON:0000160!1.86e-11!27;UBERON:0000059!3.13e-11!11;UBERON:0001155!3.03e-10!9;UBERON:0004907!5.46e-09!5;UBERON:0001007!6.48e-09!155;UBERON:0001555!6.48e-09!155;UBERON:0007026!6.48e-09!155;UBERON:0004921!1.56e-08!129;UBERON:0004185!1.56e-08!129;UBERON:0004119!2.79e-08!169;UBERON:0000925!2.79e-08!169;UBERON:0006595!2.79e-08!169;UBERON:0001052!6.83e-07!4;UBERON:0001242!9.72e-07!4;UBERON:0001262!9.72e-07!4;UBERON:0004786!9.72e-07!4;UBERON:0004808!9.72e-07!4;UBERON:0001277!9.72e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;7.88e-20;17!UBERON:0005409;2.88e-15;22!UBERON:0002108;2.93e-11;4!UBERON:0000059;8.15e-09;11!UBERON:0004921;1.16e-08;33!UBERON:0001052;5.43e-07;4!UBERON:0001242;5.43e-07;4!UBERON:0001262;5.43e-07;4!UBERON:0004786;5.43e-07;4!UBERON:0004808;5.43e-07;4!UBERON:0001277;5.43e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0000160;7.88e-20;17!UBERON:0005409;2.88e-15;22!UBERON:0002108;2.93e-11;4!UBERON:0000059;8.15e-09;11!UBERON:0004921;1.16e-08;33!UBERON:0001052;5.43e-07;4!UBERON:0001242;5.43e-07;4!UBERON:0001262;5.43e-07;4!UBERON:0004786;5.43e-07;4!UBERON:0004808;5.43e-07;4!UBERON:0001277;5.43e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.22e-19,17;UBERON:0005409,3.05e-13,25;UBERON:0002108,4.32e-11,4;UBERON:0000059,7.92e-09,11;UBERON:0001007,3.70e-08,145;UBERON:0001555,3.70e-08,145;UBERON:0007026,3.70e-08,145;UBERON:0004119,4.15e-08,160;UBERON:0000925,4.15e-08,160;UBERON:0006595,4.15e-08,160;UBERON:0001052,3.85e-07,4;UBERON:0004921,6.56e-07,118;UBERON:0001242,6.59e-07,4;UBERON:0001262,6.59e-07,4;UBERON:0004786,6.59e-07,4;UBERON:0004808,6.59e-07,4;UBERON:0001277,6.59e-07,4;UBERON:0005911,9.70e-07,82 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50045548042201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0.380987365753014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,1.81289174387433,0,0.644566922551274,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.45040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,2.05854594449042,0,0,0.66866030566487,0,0,0,0.307160702099232,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,2.12748913591143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.69401064534827,0,0,0,0,0,0,0.451191321234361,1.37243774022418,0.671286347903371,0.569261198172555,0,1.47698645169619,0,0.424059214301822,3.89499551535764,0.995261931078505,1.41532103205343,1.22206028986725,0,0,0,0,0,0,0,2.54364004611717,0,0,2.41981432097328,0,0,0,0,0,0,0,0,0,1.94144542218394,0,0.783939179315021,0,0,0,0,0,0,0.0969890164884194,0,0,1.64450309576101,1.78843150532691,0,0,2.08412932653988,0.213452994739353,0.999048047910651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.49487848582361,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.906496732161005,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0.785270481251171,0,0,0,0,0,0,0,0,1.66814029295813,1.42732666772484,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982829546539238,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,1.60114149657094,0,0,0.0642292250964595,0,0,0,0,0,0,0,2.35554524402461,0,0,0,0,0,0,0,1.41193548092464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3451348888753,0,0,0,0,0,0,0,0,1.22354542081276,0,0,1.96190514319652,0,0,0,0.0714765441766563,0,0,1.39086617842064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467878926924211,0,0.356760272332706,0,0,2.2644426535001,2.00652811080656,1.09279780251979,0,0,0,0,0,0,0,0.939839179798536,0.580120991762195,0,0,0,0,0,0,0,0,0,0,1.5870805215462,0,0,0,0.126166424835079,0.109265571963696,0,0,0,0,0,0.378893491091197,0,0,0,0,0,0,0,1.34558235096736,0,0,0,0,0.134704106029175,0,0,0,1.3874554964103,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p1@ENST00000540244 | |short_description=p1@ENST00000540244 | ||
}} | }} |
Latest revision as of 06:35, 24 July 2015
Short description: | p1@ENST00000540244 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000540244_5end |
Coexpression cluster: | NA |
Association with transcript: | -4bp_to_ENST00000540244_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 3.02e-07 | 1 |
intestinal epithelial cell | 6.59e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.22e-19 | 17 |
gastrointestinal system | 3.05e-13 | 25 |
small intestine | 4.32e-11 | 4 |
large intestine | 7.92e-09 | 11 |
digestive system | 3.70e-08 | 145 |
digestive tract | 3.70e-08 | 145 |
primitive gut | 3.70e-08 | 145 |
endoderm-derived structure | 4.15e-08 | 160 |
endoderm | 4.15e-08 | 160 |
presumptive endoderm | 4.15e-08 | 160 |
rectum | 3.85e-07 | 4 |
subdivision of digestive tract | 6.56e-07 | 118 |
intestinal mucosa | 6.59e-07 | 4 |
wall of intestine | 6.59e-07 | 4 |
gastrointestinal system mucosa | 6.59e-07 | 4 |
gastrointestinal system epithelium | 6.59e-07 | 4 |
intestinal epithelium | 6.59e-07 | 4 |
endo-epithelium | 9.70e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
melanoma | 9.05e-13 | 2 |
cell type cancer | 1.45e-12 | 143 |
cancer | 1.17e-08 | 235 |
disease of cellular proliferation | 2.22e-08 | 239 |
organ system benign neoplasm | 2.52e-07 | 1 |
skin benign neoplasm | 2.52e-07 | 1 |
integumentary system benign neoplasm | 2.52e-07 | 1 |
dermis tumor | 2.52e-07 | 1 |
cutaneous fibrous histiocytoma | 2.52e-07 | 1 |
sarcoma | 3.70e-07 | 20 |
carcinoma | 4.62e-07 | 106 |