FFCP PHASE1:Hg19::chr13:111092134..111092140,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:111092134..111092140,+ | |||
|description=CAGE_peak_at_chr13:111092134..111092140,+ | |description=CAGE_peak_at_chr13:111092134..111092140,+ | ||
|id=chr13:111092134..111092140,+ | |id=chr13:111092134..111092140,+ | ||
|ontology_enrichment_celltype=CL:0000222!1.74e-17!119;CL:0000055!2.75e-14!180;CL:0000183!7.92e-12!59;CL:0000680!5.23e-10!57;CL:0000056!5.23e-10!57;CL:0000355!5.23e-10!57;CL:0000187!2.66e-09!54;CL:0000220!5.59e-09!246;CL:0002321!7.11e-09!248;CL:0000057!9.66e-09!75;CL:0000393!1.36e-08!60;CL:0000211!1.36e-08!60;CL:0000192!1.68e-08!42;CL:0000514!1.68e-08!42;CL:0000213!2.18e-07!57;CL:0000215!2.18e-07!57 | |ontology_enrichment_celltype=CL:0000222!1.74e-17!119;CL:0000055!2.75e-14!180;CL:0000183!7.92e-12!59;CL:0000680!5.23e-10!57;CL:0000056!5.23e-10!57;CL:0000355!5.23e-10!57;CL:0000187!2.66e-09!54;CL:0000220!5.59e-09!246;CL:0002321!7.11e-09!248;CL:0000057!9.66e-09!75;CL:0000393!1.36e-08!60;CL:0000211!1.36e-08!60;CL:0000192!1.68e-08!42;CL:0000514!1.68e-08!42;CL:0000213!2.18e-07!57;CL:0000215!2.18e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0002548;5.63e-08;6!CL:1000449;5.54e-07;15!CL:0002541;9.10e-07;3!CL:1000746;9.99e-07;7!CL:1000612;9.99e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002548,2.38e-08,6;CL:1000449,6.26e-07,15;CL:0002541,6.86e-07,3;CL:0000222,7.05e-07,121;CL:1000746,9.26e-07,7;CL:1000612,9.26e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!7.45e-07!14 | |ontology_enrichment_disease=DOID:2394!7.45e-07!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!7.35e-15!79;UBERON:0007798!7.35e-15!79;UBERON:0003914!2.15e-14!118;UBERON:0004535!7.88e-14!110;UBERON:0001009!8.65e-14!113;UBERON:0004872!1.06e-12!84;UBERON:0005256!4.72e-11!143;UBERON:0000055!7.08e-11!69;UBERON:0000477!8.80e-11!286;UBERON:0002385!1.99e-10!63;UBERON:0001015!1.99e-10!63;UBERON:0000383!1.99e-10!63;UBERON:0001134!4.92e-10!61;UBERON:0002036!4.92e-10!61;UBERON:0003082!4.92e-10!61;UBERON:0000490!9.22e-10!138;UBERON:0001981!2.41e-09!60;UBERON:0007500!2.41e-09!60;UBERON:0004537!2.41e-09!60;UBERON:0006965!2.41e-09!60;UBERON:0000914!3.76e-08!83;UBERON:0002329!3.76e-08!83;UBERON:0003077!3.76e-08!83;UBERON:0003059!3.76e-08!83;UBERON:0007282!3.76e-08!83;UBERON:0009618!3.76e-08!83;UBERON:0007285!3.76e-08!83;UBERON:0004290!6.83e-08!70;UBERON:0000119!1.02e-07!312;UBERON:0004111!1.07e-07!241;UBERON:0000486!1.60e-07!82;UBERON:0002100!2.34e-07!216;UBERON:0000475!2.36e-07!365;UBERON:0000483!3.41e-07!309;UBERON:0000481!4.23e-07!347;UBERON:0001637!5.34e-07!42;UBERON:0003509!5.34e-07!42;UBERON:0004572!5.34e-07!42;UBERON:0000468!6.32e-07!659 | |ontology_enrichment_uberon=UBERON:0002049!7.35e-15!79;UBERON:0007798!7.35e-15!79;UBERON:0003914!2.15e-14!118;UBERON:0004535!7.88e-14!110;UBERON:0001009!8.65e-14!113;UBERON:0004872!1.06e-12!84;UBERON:0005256!4.72e-11!143;UBERON:0000055!7.08e-11!69;UBERON:0000477!8.80e-11!286;UBERON:0002385!1.99e-10!63;UBERON:0001015!1.99e-10!63;UBERON:0000383!1.99e-10!63;UBERON:0001134!4.92e-10!61;UBERON:0002036!4.92e-10!61;UBERON:0003082!4.92e-10!61;UBERON:0000490!9.22e-10!138;UBERON:0001981!2.41e-09!60;UBERON:0007500!2.41e-09!60;UBERON:0004537!2.41e-09!60;UBERON:0006965!2.41e-09!60;UBERON:0000914!3.76e-08!83;UBERON:0002329!3.76e-08!83;UBERON:0003077!3.76e-08!83;UBERON:0003059!3.76e-08!83;UBERON:0007282!3.76e-08!83;UBERON:0009618!3.76e-08!83;UBERON:0007285!3.76e-08!83;UBERON:0004290!6.83e-08!70;UBERON:0000119!1.02e-07!312;UBERON:0004111!1.07e-07!241;UBERON:0000486!1.60e-07!82;UBERON:0002100!2.34e-07!216;UBERON:0000475!2.36e-07!365;UBERON:0000483!3.41e-07!309;UBERON:0000481!4.23e-07!347;UBERON:0001637!5.34e-07!42;UBERON:0003509!5.34e-07!42;UBERON:0004572!5.34e-07!42;UBERON:0000468!6.32e-07!659 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;5.54e-07;15!UBERON:0004819;5.54e-07;15!UBERON:0001285;5.54e-07;15!UBERON:0007684;5.54e-07;15!UBERON:0003124;9.10e-07;3!UBERON:0000920;9.10e-07;3!UBERON:0000074;9.99e-07;7!UBERON:0001229;9.99e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,7.58e-09,117;UBERON:0004535,5.13e-08,109;UBERON:0002049,5.39e-08,78;UBERON:0007798,5.39e-08,78;UBERON:0001009,1.32e-07,112;UBERON:0004211,6.26e-07,15;UBERON:0009773,6.26e-07,15;UBERON:0001231,6.26e-07,15;UBERON:0001285,6.26e-07,15;UBERON:0007684,6.26e-07,15;UBERON:0004208,6.26e-07,15;UBERON:0000920,6.86e-07,3;UBERON:0010532,9.26e-07,7;UBERON:0000074,9.26e-07,7;UBERON:0001229,9.26e-07,7;UBERON:0001230,9.26e-07,7;UBERON:0003220,9.26e-07,7;UBERON:0005749,9.26e-07,7;UBERON:0004199,9.26e-07,7;UBERON:0004209,9.26e-07,7;UBERON:0004198,9.26e-07,7 | |||
|phase1_expression=0.54503513781167,4.49611100171065,0.563817616383885,3.00219895059391,2.68176656656373,1.74467704820074,5.06599756336621,0,2.35067065379855,0.982935746006035,0.697801167972428,0.218441372130172,0.791300934685361,0.247532705920093,0.331397375727916,2.01697543935533,2.41077811209591,0.730310090387373,0.487932798790507,0,1.22400414746552,0.313454721478088,0.286235987131057,0.547497700291537,1.75759695432724,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.255725123687061,0,1.00267582127178,0.579386075843295,0,0,0.0945348171640679,1.77383517970051,0.87834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0.39752481473341,0,0.347140501607594,0,0.419499436209906,2.20094433552054,0.626984899610432,1.03366703667732,0,2.00832367658802,0.805658634218294,0.760272105718513,10.2506064170231,0,11.3419872703446,0.357198913136319,0.22452937262617,0,0,0,0.183201743930407,0,0,0,3.47880366186723,1.51956613997496,0.264818361626438,2.0078563452417,0,1.68203280042692,2.1349799145941,5.67335361359468,0.622422070799533,1.88594940897563,1.63461903113459,1.66493170409425,0.576175924479999,0,0.312160076830321,0.570471821544449,0,0,0,0,0,0.368502951935304,0.413303124703062,1.18800285728205,2.47266929278557,0,3.59309070908119,0,0.500474079487857,0,0.438977620880838,1.22595118319608,0.901428353439581,0.794025282120147,1.4351170855109,0.85422955527427,0.211931901159562,1.50045548042201,0.206105058476878,1.03056216018252,0.18611685633159,0.675105328965065,1.16924406193438,1.00973509697646,0.0920498986422993,0.646584227275248,2.13005755509969,0.503760491138201,0.847802961552438,0,0.272746120590835,0,0.121973706129595,0,0.116193942869518,0,0.504641701751257,0.36497735907583,0,0,0,0,0,0.118306800039844,0.168584690078102,0.241011029883482,0,0.435758888184812,0,0.134831308160164,0,0.38474715694639,1.4763109092493,1.40241773803446,0,1.47008711385542,0,0,0,0,0,0.171567810298526,0,0,0,0.277765335475589,0.325808305310325,0,0,0.34779121492523,0.821860859650752,2.88732895522148,0.462985512576611,2.85381228351897,0,0,0,0,0,0,0.503946384596579,0,0,0,0.383382679165211,0,0,0,0,0,0.063497894292169,0,0,0,0.822619941626588,0,0.571652865261156,0.784917590417525,0.87192013766656,0.2933531432838,0.517086863031111,0,0.845302752556,1.59562869950922,4.16029747645464,0,0,0,1.00084595560703,0.542621605391443,1.64648067356154,0,2.84313558994037,0,0.301439377059586,0,1.19967589418468,0,0,0,1.4377491329495,1.14861935834114,0,0.434343920002738,0.61642896765115,0.358121926479791,0,0,0,0,0.254094624222463,0,0,0.335032530668698,0,0,0,0,0.36807447515742,0,0.271265023699736,2.07970861530807,3.03329280955175,0.946214490203608,0.702848489956279,0,0,0,0.664225598535437,0.368738337083406,0.260650843404249,5.09083009403126,7.54915532383883,0,0,0,0,0,0,0,0.920771839728375,1.68396056659844,0.768834895534206,0,1.28683136914886,0,0.154209693802656,0,0.0821271560138091,0.519254429183621,0.348631135379878,0,1.80455823272956,0,0.68888668898764,1.82091168006717,1.04899531967539,0,0.847168708148562,0,8.76835347919564,1.47772280450026,1.13733384070897,1.87103075804167,1.29549549661284,3.08454505380579,0.541892875087706,2.50844886927427,0.509752546090077,0.831076008928724,1.11937377361089,0,0,0.256450125116389,0,0,0.206082023295445,0,0,0,0,1.6068392984416,0.096670718292122,0,0.307007349452259,0.413509717453592,0.429680979473094,0.580066775656914,0.596586391912706,0,0,0.384380134730212,0.255225424989168,0,0,0.62962469366128,0,0.308033580176089,0,0,0.55597265731176,0.429374660225974,0.744316738719335,2.21465597303108,1.71567174531442,0.511795582622668,0,0,0.78494864019923,0.359744915166629,2.74537029736055,0.706874414074119,0.202182481573316,0,0.421258456238981,0.975267478179181,1.21856744815642,2.11300293513511,0.409499734223957,0.848432591722276,2.26016233240486,0,0.66343897524122,1.75380354101505,1.15755106853338,0,0.405820753925408,0.30982349809975,1.12678241012897,0.430234056612155,0.491245205065606,0.7133421029625,0,0,0.329294892959902,0.379473173765715,0.349934720244983,0.192444225451024,0.670302275535787,0,0.0941438007767792,0.86101074534246,0,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0.140669416410513,0,0,0,1.79323189425963,0,0,0,0,2.17727711363265,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0.724999575434793,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384751292518985,0.113942055847001,0,0.269272933229316,0.108647371922008,1.5950057986596,2.56473261525214,3.19820865611181,0,0,0,0,0,0,0,0,2.10998064528027,1.63232808159148,0,0,0,0.0884575645033392,0,0,0.123563938946503,0.313265848516366,0.134802265961354,0.802577647298789,0,0,0,0.242780379534093,0.394584402849391,1.20990716048664,0.30607276163049,0.442306057399416,0,0,0,0.330991955875499,0,0,0,0,0,0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| ||
|short_description=p@chr13:111092134..111092140,+ | |short_description=p@chr13:111092134..111092140,+ | ||
}} | }} |
Latest revision as of 14:32, 24 July 2015
Short description: | p@chr13:111092134..111092140, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:111092134..111092140, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac fibroblast | 2.38e-08 | 6 |
epithelial cell of nephron | 6.26e-07 | 15 |
chorionic membrane mesenchymal stem cell | 6.86e-07 | 3 |
mesodermal cell | 7.05e-07 | 121 |
glomerular cell | 9.26e-07 | 7 |
kidney corpuscule cell | 9.26e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 7.58e-09 | 117 |
cardiovascular system | 5.13e-08 | 109 |
vasculature | 5.39e-08 | 78 |
vascular system | 5.39e-08 | 78 |
circulatory system | 1.32e-07 | 112 |
nephron epithelium | 6.26e-07 | 15 |
renal tubule | 6.26e-07 | 15 |
nephron tubule | 6.26e-07 | 15 |
nephron | 6.26e-07 | 15 |
uriniferous tubule | 6.26e-07 | 15 |
nephrogenic mesenchyme | 6.26e-07 | 15 |
egg chorion | 6.86e-07 | 3 |
primitive nephron | 9.26e-07 | 7 |
renal glomerulus | 9.26e-07 | 7 |
renal corpuscle | 9.26e-07 | 7 |
glomerular capsule | 9.26e-07 | 7 |
metanephric mesenchyme | 9.26e-07 | 7 |
glomerular tuft | 9.26e-07 | 7 |
S-shaped body | 9.26e-07 | 7 |
renal vesicle | 9.26e-07 | 7 |
comma-shaped body | 9.26e-07 | 7 |