FFCP PHASE1:Hg19::chr13:111989759..111989819,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:111989759..111989819,+ | |||
|coexpression_cluster_id=C69 | |coexpression_cluster_id=C69 | ||
|description=CAGE_peak_at_chr13:111989759..111989819,+ | |description=CAGE_peak_at_chr13:111989759..111989819,+ | ||
|id=chr13:111989759..111989819,+ | |id=chr13:111989759..111989819,+ | ||
|ontology_enrichment_celltype=CL:0000057!5.48e-23!75;CL:0000055!2.42e-22!180;CL:0000048!1.75e-15!430;CL:0000723!9.37e-15!436;CL:0000034!8.01e-14!444;CL:0002320!6.55e-13!365;CL:0002371!4.05e-12!591;CL:0000144!1.46e-11!625;CL:0002620!1.25e-10!23;CL:0000134!4.97e-10!358;CL:0000219!4.21e-09!390;CL:0000548!6.56e-09!679;CL:0000004!6.56e-09!679;CL:0000255!6.56e-09!679;CL:0000012!1.14e-08!682;CL:0002551!9.42e-08!6;CL:0000183!2.93e-07!59;CL:0000187!3.59e-07!54;CL:0002570!9.41e-07!8 | |ontology_enrichment_celltype=CL:0000057!5.48e-23!75;CL:0000055!2.42e-22!180;CL:0000048!1.75e-15!430;CL:0000723!9.37e-15!436;CL:0000034!8.01e-14!444;CL:0002320!6.55e-13!365;CL:0002371!4.05e-12!591;CL:0000144!1.46e-11!625;CL:0002620!1.25e-10!23;CL:0000134!4.97e-10!358;CL:0000219!4.21e-09!390;CL:0000548!6.56e-09!679;CL:0000004!6.56e-09!679;CL:0000255!6.56e-09!679;CL:0000012!1.14e-08!682;CL:0002551!9.42e-08!6;CL:0000183!2.93e-07!59;CL:0000187!3.59e-07!54;CL:0002570!9.41e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0002620;2.03e-11;23!CL:0002551;1.61e-09;6!CL:0000057;2.86e-08;73!CL:0002582;5.67e-08;3!CL:0002564;9.24e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.47e-17,76;CL:0002620,2.59e-11,23;CL:0002551,1.39e-09,6;CL:0002320,7.46e-09,361;CL:0000048,2.03e-08,427;CL:0000723,4.39e-08,433;CL:0002582,5.32e-08,3;CL:0002564,6.27e-08,3;CL:0000034,1.18e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!2.71e-13!375;UBERON:0000914!2.86e-12!83;UBERON:0002329!2.86e-12!83;UBERON:0003077!2.86e-12!83;UBERON:0003059!2.86e-12!83;UBERON:0007282!2.86e-12!83;UBERON:0009618!2.86e-12!83;UBERON:0007285!2.86e-12!83;UBERON:0003102!1.45e-11!95;UBERON:0004290!8.14e-09!70;UBERON:0002199!1.24e-08!45;UBERON:0002416!1.24e-08!45;UBERON:0000486!2.44e-07!82;UBERON:0005256!7.80e-07!143 | |ontology_enrichment_uberon=UBERON:0002384!2.71e-13!375;UBERON:0000914!2.86e-12!83;UBERON:0002329!2.86e-12!83;UBERON:0003077!2.86e-12!83;UBERON:0003059!2.86e-12!83;UBERON:0007282!2.86e-12!83;UBERON:0009618!2.86e-12!83;UBERON:0007285!2.86e-12!83;UBERON:0003102!1.45e-11!95;UBERON:0004290!8.14e-09!70;UBERON:0002199!1.24e-08!45;UBERON:0002416!1.24e-08!45;UBERON:0000486!2.44e-07!82;UBERON:0005256!7.80e-07!143 | ||
|ontology_enrichment_uberon_v019=UBERON:0011135;2.17e-12;5!UBERON:0002216;2.17e-12;5!UBERON:0011134;2.17e-12;5!UBERON:0002209;2.17e-12;5!UBERON:0002213;2.17e-12;5!UBERON:0007844;2.17e-12;5!UBERON:0011138;2.17e-12;5!UBERON:0001130;2.17e-12;5!UBERON:0001066;2.17e-12;5!UBERON:0001468;2.17e-12;5!UBERON:0000075;6.34e-11;16!UBERON:0003102;9.19e-09;50!UBERON:0002067;1.45e-08;9!UBERON:0002199;6.80e-08;46!UBERON:0002416;6.80e-08;46!UBERON:0002242;9.24e-08;3!UBERON:0004905;1.48e-07;8!UBERON:0000982;1.48e-07;8!UBERON:0004770;1.48e-07;8!UBERON:0002072;1.69e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,7.13e-15,99;UBERON:0002199,1.22e-12,46;UBERON:0002416,1.22e-12,46;UBERON:0011135,1.50e-12,5;UBERON:0002216,1.50e-12,5;UBERON:0011134,1.50e-12,5;UBERON:0002209,1.50e-12,5;UBERON:0002213,1.50e-12,5;UBERON:0005856,1.50e-12,5;UBERON:0005866,1.50e-12,5;UBERON:0005863,1.50e-12,5;UBERON:0007844,1.50e-12,5;UBERON:0011138,1.50e-12,5;UBERON:0001130,1.50e-12,5;UBERON:0001066,1.50e-12,5;UBERON:0001468,1.50e-12,5;UBERON:0000075,4.91e-11,16;UBERON:0002384,2.22e-09,371;UBERON:0002097,1.22e-08,41;UBERON:0002067,1.32e-08,9;UBERON:0004016,1.32e-08,9;UBERON:0010083,1.32e-08,9;UBERON:0002242,6.27e-08,3;UBERON:0003068,6.27e-08,3;UBERON:0002328,6.27e-08,3;UBERON:0004880,6.27e-08,3;UBERON:0011137,1.11e-07,14;UBERON:0004905,1.19e-07,8;UBERON:0000982,1.19e-07,8;UBERON:0004770,1.19e-07,8;UBERON:0002072,1.61e-07,5 | |||
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| ||
|short_description=p@chr13:111989759..111989819,+ | |short_description=p@chr13:111989759..111989819,+ | ||
}} | }} |
Latest revision as of 14:39, 24 July 2015
Short description: | p@chr13:111989759..111989819, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:111989759..111989819, + |
Coexpression cluster: | C69_anaplastic_CD14_cord_hairy_mycosis_adult_NK |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.47e-17 | 76 |
skin fibroblast | 2.59e-11 | 23 |
fibroblast of dermis | 1.39e-09 | 6 |
connective tissue cell | 7.46e-09 | 361 |
multi fate stem cell | 2.03e-08 | 427 |
somatic stem cell | 4.39e-08 | 433 |
visceral preadipocyte | 5.32e-08 | 3 |
nucleus pulposus cell of intervertebral disc | 6.27e-08 | 3 |
stem cell | 1.18e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
surface structure | 7.13e-15 | 99 |
integument | 1.22e-12 | 46 |
integumental system | 1.22e-12 | 46 |
intervertebral cartilage | 1.50e-12 | 5 |
symphysis | 1.50e-12 | 5 |
nonsynovial joint | 1.50e-12 | 5 |
fibrous joint | 1.50e-12 | 5 |
cartilaginous joint | 1.50e-12 | 5 |
developing mesenchymal condensation | 1.50e-12 | 5 |
pre-cartilage condensation | 1.50e-12 | 5 |
cartilaginous condensation | 1.50e-12 | 5 |
cartilage element | 1.50e-12 | 5 |
post-cranial axial skeletal system | 1.50e-12 | 5 |
vertebral column | 1.50e-12 | 5 |
intervertebral disk | 1.50e-12 | 5 |
intervertebral joint | 1.50e-12 | 5 |
subdivision of skeletal system | 4.91e-11 | 16 |
connective tissue | 2.22e-09 | 371 |
skin of body | 1.22e-08 | 41 |
dermis | 1.32e-08 | 9 |
dermatome | 1.32e-08 | 9 |
future dermis | 1.32e-08 | 9 |
nucleus pulposus | 6.27e-08 | 3 |
axial mesoderm | 6.27e-08 | 3 |
notochord | 6.27e-08 | 3 |
chordamesoderm | 6.27e-08 | 3 |
axial skeletal system | 1.11e-07 | 14 |
articulation | 1.19e-07 | 8 |
skeletal joint | 1.19e-07 | 8 |
articular system | 1.19e-07 | 8 |
hypodermis | 1.61e-07 | 5 |